Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F204 I0 R1 247 174.3 8556966 94.2% 8060661 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,682,158 T→C 42.7% K196K (AAA→AAG)  yphG ← DUF4380 domain‑containing TPR repeat protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,682,1580TC42.7% 58.2 / 190.1 161K196K (AAA→AAG) yphGDUF4380 domain‑containing TPR repeat protein
Reads supporting (aligned to +/- strand):  ref base T (59/32);  new base C (32/36);  total (91/70)
Fisher's exact test for biased strand distribution p-value = 3.49e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.66e-01

Only 100 of 169 total aligned reads displayed.

AGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGC  >  NC_000913/2682059‑2682254
                                                                                                   |                                                                                                
aGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCt                                                                                                  >  2:2781694/1‑100 (MQ=255)
aGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCt                                                                                                  >  2:47742/1‑100 (MQ=255)
 gTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCtt                                                                                                 <  2:598152/100‑1 (MQ=255)
   gCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTc                                                                                               <  2:2931647/100‑1 (MQ=255)
    ccGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCa                                                                                              >  1:1422213/1‑100 (MQ=255)
      ggTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGGTCAAACACCGCCGTTACATCCGGCGGGAAGACGCGCTGATGCCCTTCCCCCCGTTTCAc                                                                                             >  1:1907439/1‑99 (MQ=255)
          gCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCg                                                                                        <  2:2437568/100‑1 (MQ=255)
           cGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACTGAAGTTACATCAGGCGGGAAGACGACATGATGCCCTTCTCCCCCTTTCCCTGCCgg                                                                                       >  1:1858167/1‑100 (MQ=255)
           cGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCgg                                                                                       >  1:619605/1‑100 (MQ=255)
           cGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCgg                                                                                       >  2:901271/1‑100 (MQ=255)
           cGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCgg                                                                                       <  1:2528234/100‑1 (MQ=255)
            gATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCggg                                                                                      <  1:1290529/100‑1 (MQ=255)
                gggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTgg                                                                                  >  1:1331582/1‑100 (MQ=255)
                gggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTgg                                                                                  <  1:3954009/100‑1 (MQ=255)
                gcgAAAACGGAGACGGCCCATTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGAAGCTCTGAGGCCCTTCCCCCCCCGTCCGTGCCGGGGTgt                                                                                  >  1:352017/3‑99 (MQ=255)
                 ggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGc                                                                                 <  2:98802/100‑1 (MQ=255)
                 ggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGc                                                                                 <  1:4099857/100‑1 (MQ=255)
                 ggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTgac                                                                                 <  2:2415774/100‑3 (MQ=255)
                 ggAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGc                                                                                 >  1:3461611/1‑100 (MQ=255)
                  gAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCCCCGCCGGGTTGGcc                                                                                >  1:735293/1‑100 (MQ=255)
                  gAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGcc                                                                                <  1:744291/100‑1 (MQ=255)
                  gAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGcc                                                                                <  1:652917/100‑1 (MQ=255)
                   agaGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGccc                                                                               <  1:501123/98‑1 (MQ=255)
                   aaaGCGGAGACGGCCCGTGTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGc                                                                                 <  1:1155881/98‑1 (MQ=255)
                    aaGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCcca                                                                              <  2:436410/100‑1 (MQ=255)
                    aaGCGGAGACGGCCCGATTGCCGTGATCAAACACCGCCGTTACATCCTGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGcc                                                                                <  1:4041193/98‑1 (MQ=255)
                     aGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCccac                                                                             <  1:283991/100‑1 (MQ=255)
                      gCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCccacc                                                                            <  2:3475369/100‑1 (MQ=255)
                      gCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCccacc                                                                            >  1:2355224/1‑100 (MQ=255)
                       cGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCccacca                                                                           >  2:688622/1‑100 (MQ=255)
                       cGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCccac                                                                             >  1:1590364/1‑98 (MQ=255)
                         gagaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACcaca                                                                         >  1:1195671/1‑100 (MQ=255)
                          agaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACaa                                                                        >  2:4093748/1‑100 (MQ=255)
                           gaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAg                                                                       <  1:884868/100‑1 (MQ=255)
                            aCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGa                                                                      <  2:3035059/100‑1 (MQ=255)
                              ggCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGaaa                                                                    <  2:2347244/100‑1 (MQ=255)
                              ggCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGaaa                                                                    <  2:1164259/100‑1 (MQ=255)
                              ggCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGaaa                                                                    <  1:2508540/100‑1 (MQ=255)
                               gCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAAt                                                                   <  1:3287588/100‑1 (MQ=255)
                                   gTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAcg                                                               <  2:3925252/100‑1 (MQ=255)
                                   gTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGAcg                                                               >  2:3679811/1‑100 (MQ=255)
                                    tttGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAcgc                                                              <  1:311060/100‑1 (MQ=255)
                                      tGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcgg                                                            <  1:4141005/100‑1 (MQ=255)
                                       gCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcggc                                                           >  2:217743/1‑100 (MQ=255)
                                       gCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcggc                                                           >  2:123502/1‑100 (MQ=255)
                                       gCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTACACTGCCGGGTTGGCCCACCACAAGAAATGACgcggc                                                           >  1:2884607/1‑100 (MQ=255)
                                        ccGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcggcg                                                          >  2:3979613/1‑100 (MQ=255)
                                           tGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtgg                                                       <  2:3508775/100‑1 (MQ=255)
                                            gATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtgg                                                       >  1:673278/1‑99 (MQ=255)
                                            gATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtggc                                                      <  2:3141334/100‑1 (MQ=255)
                                             aTCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtggcg                                                     >  2:1985259/1‑100 (MQ=255)
                                               cAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtggcgt                                                    >  1:1675315/1‑99 (MQ=255)
                                                aaaCACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTc                                                  >  2:3901155/1‑100 (MQ=255)
                                                 aaCACCGCCGTCACATCCGGCGGGAGGACGCTCTGATGCCCTGCCCCCCCCCTCGCTGACGGGTTGGCCCACCACAAGAAATGACGAGCCGTGGCGTTcc                                                 <  1:2063685/100‑1 (MQ=255)
                                                  acacCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTccc                                                <  1:3588756/100‑1 (MQ=255)
                                                   cacCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCg                                               >  2:1457090/1‑100 (MQ=255)
                                                   cacCGCCGTTACATCCGGCAGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGGGTTccc                                                >  1:3386544/1‑99 (MQ=255)
                                                    acCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCg                                               <  2:4014610/99‑1 (MQ=255)
                                                     ccgccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGtt                                             <  2:1806591/100‑1 (MQ=255)
                                                       gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTtat                                           <  1:2746734/100‑1 (MQ=255)
                                                       gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTtat                                           >  1:976247/1‑100 (MQ=255)
                                                       gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTGCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGATGCGGCGTGGCGTTCCCGTtat                                           <  1:3689285/100‑1 (MQ=255)
                                                        ccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTtata                                          <  1:2663727/100‑1 (MQ=255)
                                                        ccgTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGAGTTCCCGTtata                                          >  2:624285/1‑100 (MQ=255)
                                                            tACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAcg                                      >  2:1929304/1‑100 (MQ=255)
                                                            tACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAcg                                      >  1:2034309/1‑100 (MQ=255)
                                                              cATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAcgcg                                    >  2:3382615/1‑100 (MQ=255)
                                                              cATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAcgcg                                    >  2:3678404/1‑100 (MQ=255)
                                                                tCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGc                                  >  2:422442/1‑100 (MQ=255)
                                                                  cggcggGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTg                                >  2:3251087/1‑100 (MQ=255)
                                                                   ggcggGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTgg                               >  2:1323458/1‑100 (MQ=255)
                                                                    gcggGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGc                              >  2:260487/1‑100 (MQ=255)
                                                                    gcggGAAGACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGc                              <  1:2028581/100‑1 (MQ=255)
                                                                       ggAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGAt                           >  2:4142097/1‑100 (MQ=255)
                                                                       ggAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCAGCTTGGCGTTCCCGTTATAGACGCGGCTGGCGag                           >  2:2040667/1‑99 (MQ=255)
                                                                           gACGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTcc                       >  2:3830386/1‑100 (MQ=255)
                                                                             cGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAg                     >  2:1592793/1‑100 (MQ=255)
                                                                             cGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAg                     >  2:469902/1‑100 (MQ=255)
                                                                             cGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAg                     >  1:1233116/1‑100 (MQ=255)
                                                                             cGCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAg                     <  1:3792148/100‑1 (MQ=255)
                                                                              gCTCTGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAgc                    <  2:1394677/100‑1 (MQ=255)
                                                                               ctctGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAgcg                   <  2:3180878/100‑1 (MQ=255)
                                                                               ctctGATGCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAgcg                   <  2:3613079/100‑1 (MQ=255)
                                                                                tctGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAgcgc                  >  1:4216783/1‑100 (MQ=255)
                                                                                tctGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAgcgc                  >  1:4217490/1‑100 (MQ=255)
                                                                                  ngATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGcgccg                >  1:4161256/2‑100 (MQ=255)
                                                                                   gATGCCCTTCCCCCCC‑TTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCgccgcc              <  1:2686258/100‑1 (MQ=255)
                                                                                     tGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGccc             <  2:301046/100‑1 (MQ=255)
                                                                                     tGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGccc             >  1:307659/1‑100 (MQ=255)
                                                                                     tGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGccc             >  2:1237076/1‑100 (MQ=255)
                                                                                      gCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCg            >  2:2259551/1‑100 (MQ=255)
                                                                                      gCCCTTCCCCCCCCTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCg            >  1:1009640/1‑100 (MQ=255)
                                                                                        ccTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGt          <  2:4095001/100‑1 (MQ=255)
                                                                                           cccccccccTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTc         <  2:27036/97‑1 (MQ=255)
                                                                                             ccccccTTTCACTGCCGTGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGGTCCCGTAATATACGCGGGGTGCGATTTTCAGCGCCGCTCGTTTAggg     >  1:3621955/1‑100 (MQ=255)
                                                                                             ccccccTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAggg     >  2:519465/1‑100 (MQ=255)
                                                                                              ccccccTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGgc    <  2:3270574/100‑1 (MQ=255)
                                                                                              cccccTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGgc    <  1:792647/100‑1 (MQ=255)
                                                                                              cccccTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTGCCCGTGATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAggg     <  1:1031785/99‑1 (MQ=255)
                                                                                              ccaccTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACACGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGAATTCCAGCGTCGCCTGATCAgg      >  1:936523/4‑98 (MQ=255)
                                                                                                   |                                                                                                
AGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCTTCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGC  >  NC_000913/2682059‑2682254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A