Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F204 I0 R1
|
247 |
174.3 |
8556966 |
94.2% |
8060661 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,678,937 |
T→A |
56.3% |
Q84L (CAG→CTG) |
yhjH ← |
cyclic‑di‑GMP phosphodiesterase, FlhDC‑regulated |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,678,937 | 0 | T | A | 56.3%
| 60.9
/ 220.9
| 168 | Q84L (CAG→CTG) | yhjH | cyclic‑di‑GMP phosphodiesterase, FlhDC‑regulated |
| Reads supporting (aligned to +/- strand): ref base T (33/40); new base A (44/50); total (77/91) |
| Fisher's exact test for biased strand distribution p-value = 8.76e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.46e-01 |
Only 100 of 169 total aligned reads displayed.
GCTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGACCACC > NC_000913/3678839‑3679035
|
gCTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTg > 2:1801886/1‑100 (MQ=255)
cTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGCCCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGc < 1:3172118/100‑1 (MQ=255)
cTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGc < 1:1867015/100‑1 (MQ=255)
cTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGc > 2:389894/1‑100 (MQ=255)
aCGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGctct > 1:1712374/1‑100 (MQ=255)
cGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCtt > 2:3556879/1‑100 (MQ=255)
cGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCtt > 2:748499/1‑100 (MQ=255)
gCAGGGCGATGGGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCt < 1:3272139/93‑1 (MQ=255)
cAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTc < 2:2467956/100‑1 (MQ=255)
aGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTca < 1:422036/100‑1 (MQ=255)
aGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTca < 1:1160262/100‑1 (MQ=255)
gggCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTcac > 2:1385096/1‑100 (MQ=255)
gggCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTcac > 2:1383934/1‑100 (MQ=255)
tGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTc < 2:2791852/100‑1 (MQ=255)
aGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCa > 2:1601865/1‑100 (MQ=255)
aGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCa < 2:3254612/100‑1 (MQ=255)
aGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCa > 1:4157024/1‑100 (MQ=255)
aGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCa > 2:326158/1‑100 (MQ=255)
gCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCAt > 1:2893956/1‑100 (MQ=255)
ntAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATcc > 2:3486000/2‑100 (MQ=255)
tAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCg > 2:1128322/1‑100 (MQ=255)
tAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCg < 2:1189516/100‑1 (MQ=255)
agcgcccttaaTATTGACCGATGCCAGCAGGCCGTGCTCTCTTAAGTAGTCGCCTTTTTGCGCCAGCCAATCAATCAGCTCTTTCACATCTTCCTTCCGa < 1:1903178/91‑1 (MQ=255)
cATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTTTTTTTGTATTTCAATCTGCTCTTTCACAACCTCCATCCGATGGCt > 1:1558358/1‑100 (MQ=255)
aTCAATATTGACTGATGTCAGCAGTCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGc < 1:2581194/98‑1 (MQ=255)
tCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTACGCCAGCAAATCAATCAGCACTTTCACAACCTCCATCCGATGGCTg > 1:2000406/1‑99 (MQ=255)
aaTATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACg > 2:2964019/1‑100 (MQ=255)
atatTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACgg < 1:4086665/100‑1 (MQ=255)
atatTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACgg < 1:255384/100‑1 (MQ=255)
tatTGACCGATGCCAGCAGGCCGTGCTATATAAAGAAGTCGGCTGTTTGAGCCAGCAAATCAATAAGCTCTTTCACAACCTCCCTCCGATGGCTGAggg > 1:1570818/1‑99 (MQ=255)
gACCGATGCCAGCAGGCCGTGCTCTATAAAGCAGTCGGCTTTGTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGAtt > 2:2881509/1‑100 (MQ=255)
gACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGTCAGTAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGAtt > 1:709797/1‑100 (MQ=255)
gACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGAtt > 1:3081081/1‑100 (MQ=255)
gACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGAtt < 1:2876859/100‑1 (MQ=255)
aCCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGAttt < 2:555516/100‑1 (MQ=255)
ccGATGCCAGCAGGCCGTGCTCTATAAAGACGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTc < 1:3812409/100‑1 (MQ=255)
ccGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTc > 1:3117807/1‑100 (MQ=255)
ccGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCCCTTTCACAACCTCCAAACGATGGCTGACGGTGATTTc > 1:2077038/1‑100 (MQ=255)
ccGACGCCAGCAGGCCGTGCCCTATAAAGAAGTCGGCTATTTGCGCCAGCAACTCAATCAGCTCATTCCCCCCCTCCATCCGATGGCTAACCGTGATTTc > 1:2698728/1‑100 (MQ=255)
gATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAg > 2:4250450/1‑100 (MQ=255)
gCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTaa < 2:409318/100‑1 (MQ=255)
ccAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTaaa > 1:1037461/1‑100 (MQ=255)
ccAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTaaa > 2:253965/1‑100 (MQ=255)
ccAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTaaa > 1:1467228/1‑100 (MQ=255)
ccAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTaaa > 1:2786438/1‑100 (MQ=255)
agcagGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAAt < 2:751351/100‑1 (MQ=255)
agcagGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAAt < 1:4202743/100‑1 (MQ=255)
gcagGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATa < 2:2667881/100‑1 (MQ=255)
gcagGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATa > 2:1748898/1‑100 (MQ=255)
cagGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAg > 2:525956/1‑100 (MQ=255)
cagGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAg < 2:2565057/100‑1 (MQ=255)
agGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGc < 1:1607778/100‑1 (MQ=255)
agGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCCTCCGATGGCTGACGGTGATTTCAGTAAAATAGc < 1:2799904/100‑1 (MQ=255)
agGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGc > 2:1179582/1‑100 (MQ=255)
agGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGc < 2:412961/100‑1 (MQ=255)
agGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTACATCCGATGGCTGACGGTGATTTCAGTAAAATAGc > 1:449871/1‑100 (MQ=255)
ggCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCg > 1:637128/1‑100 (MQ=255)
gTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATcc < 1:3453941/100‑1 (MQ=255)
ctctATAAAGAAGTGGGCTCTTTGCGCTAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATc > 1:4084081/1‑96 (MQ=255)
ctATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCcggcgg < 2:1010076/100‑1 (MQ=255)
tataAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCCATCGCTTACGGTCATTTCAGTAAAATAGCGATCCggcggc > 1:1633210/1‑100 (MQ=255)
tataAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAGTAGCGATCCggcggc > 2:4213949/1‑100 (MQ=255)
ataAAGAAGTCGGCTTTTTTTTTTAGTTAATCAATCAGCTCTTTCACAACCTCCATCCTATGGCTGACGGTGATTTCAGTAAAATAGCGATCTGGCGGCa > 1:3868658/1‑100 (MQ=255)
ataAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCAGCCGATGGCTGAAGGTGATTTCACTAAAATAGCGATACGGCGGCa > 1:529486/1‑100 (MQ=255)
taAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAg < 2:189485/100‑1 (MQ=255)
taAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAg > 1:547406/1‑100 (MQ=255)
aagaagTCTGCTTTTTGCGCCAGTAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGc < 1:943037/100‑1 (MQ=255)
gaagTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGt < 1:1228022/100‑1 (MQ=255)
gaagTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGt < 2:414435/100‑1 (MQ=255)
agTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTg > 2:3299166/1‑100 (MQ=255)
gTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGc > 1:828048/1‑100 (MQ=255)
gTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGc < 1:1007492/100‑1 (MQ=255)
cGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGa > 2:3734886/1‑100 (MQ=255)
gCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGCTCCGGCGGCAGGCGTTGCGAAg < 1:3556866/100‑1 (MQ=255)
cTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAgg > 2:4064243/1‑100 (MQ=255)
ttttGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGt < 1:4207121/100‑1 (MQ=255)
ttttGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGt < 2:1467232/100‑1 (MQ=255)
gcgcCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCaa > 2:3074819/1‑100 (MQ=255)
cgcCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAg > 1:2602015/1‑100 (MQ=255)
cgcCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAg > 2:760280/1‑100 (MQ=255)
cgcCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAg < 2:3990370/100‑1 (MQ=255)
cgcCAGCAAATCAATCAGCTCTTTCACAACCGCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAg < 1:1044547/100‑1 (MQ=255)
ccAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAggg < 1:4236686/100‑1 (MQ=255)
ccAGCAAATCAATCTGATCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAggg > 1:3503253/1‑100 (MQ=255)
ccAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGCTCCGGCGGCAGGCGTTGCGAAGGGTTCAAggg > 1:39191/1‑100 (MQ=255)
cAGCAAATAAATCCGCTGTTTCACAACCTCCCTCCGATGGCTGAAGGTGATTTCAGTAAAATAGCGATCCGTCGGCAGGCGTTGCGAAGGGTTCAAGGGa < 1:786886/100‑1 (MQ=255)
aGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAGGGGTTCAAGTGAt < 1:2472379/100‑1 (MQ=255)
gCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATg > 2:3749590/1‑100 (MQ=255)
gCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATg < 2:1642650/100‑1 (MQ=255)
cAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGc > 2:1314930/1‑100 (MQ=255)
cAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGc > 1:3161502/1‑100 (MQ=255)
aaaTCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGCTTCCAGTAAAATAGCGATCCGGCGGCAGGCGGTGCGAAGGGTTCACGGGATGCg > 2:4133484/1‑100 (MQ=255)
atcaatcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTg < 2:3362191/100‑1 (MQ=255)
atcaatcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTg < 2:2097267/100‑1 (MQ=255)
tcaatcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGa < 2:839855/100‑1 (MQ=255)
caatcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGac > 2:2404092/1‑100 (MQ=255)
caatcAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGac < 1:2405918/100‑1 (MQ=255)
caatcAGCTCTTTCACAACCCCCATCCGGCGTCTGTCGCTGATTTAAGTAAAATAGCGATCCGGCCGCAGGCGTTGCGTAGGGTTCAAGGGATGCGTGat < 1:188824/100‑2 (MQ=255)
aatcAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGacc > 2:3630249/1‑100 (MQ=255)
cTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGaccacc < 1:2953560/100‑1 (MQ=255)
|
GCTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGACCACC > NC_000913/3678839‑3679035
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
