Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F133 I0 R1
|
200 |
171.4 |
8351354 |
94.3% |
7875326 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,678,937 |
T→A |
16.1% |
Q84L (CAG→CTG) |
yhjH ← |
cyclic‑di‑GMP phosphodiesterase, FlhDC‑regulated |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,678,937 | 0 | T | A | 16.1%
| 517.6
/ 79.4
| 204 | Q84L (CAG→CTG) | yhjH | cyclic‑di‑GMP phosphodiesterase, FlhDC‑regulated |
| Reads supporting (aligned to +/- strand): ref base T (90/81); new base A (15/18); total (105/99) |
| Fisher's exact test for biased strand distribution p-value = 5.69e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.68e-01 |
Only 100 of 208 total aligned reads displayed.
TGCTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGACCACCG > NC_000913/3678838‑3679036
|
gCTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGTGCCAGCAAATCAATCTg > 1:3872173/1‑100 (MQ=255)
cTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGc < 1:2259859/100‑1 (MQ=255)
cTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGc > 2:2652130/1‑100 (MQ=255)
tGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGct < 1:3227840/100‑1 (MQ=255)
gccGCAGGGCGATGAGCGTAGGGCCATCAATATTGTCCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGct < 2:4172245/97‑1 (MQ=255)
gACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGctc > 2:2565237/1‑100 (MQ=255)
gACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGctc > 1:550853/1‑100 (MQ=255)
gACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGctc > 1:2964995/1‑100 (MQ=255)
gACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGctc < 2:1981923/100‑1 (MQ=255)
gACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGctc > 2:1445086/1‑100 (MQ=255)
aCGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGctct < 2:1388528/100‑1 (MQ=255)
cGCAGGGCGATGAGCGTAGGGCCCTCAATATTTACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCtt > 1:1483511/1‑100 (MQ=255)
cAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTc < 1:2886311/100‑1 (MQ=255)
aGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTca < 1:3500690/100‑1 (MQ=255)
aGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTca < 2:1497093/100‑1 (MQ=255)
aGGACGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTca > 1:3483316/1‑100 (MQ=255)
gggCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTcac < 1:2123963/100‑1 (MQ=255)
gggCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTcac > 2:55101/1‑100 (MQ=255)
ggCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTcaca > 1:2913198/1‑100 (MQ=255)
gCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACaa < 2:1316086/100‑1 (MQ=255)
gATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAAcc < 1:3745142/100‑1 (MQ=255)
aTGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCt > 1:773074/1‑100 (MQ=255)
gAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTcc < 1:103909/100‑1 (MQ=255)
gCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCAt < 1:3920970/100‑1 (MQ=255)
gcgggggCATCAATATCGCCCGATGCCAGCAGGCCGTGCACTATAAAGGAGTCGGCAGTCTTCGCCAGCAAATCACTCTGCTCTTCCACAAcc < 2:1662814/90‑1 (MQ=255)
gTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATcc < 2:775899/100‑1 (MQ=255)
gTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATcc > 1:1081676/1‑100 (MQ=255)
aGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGa < 2:2030976/100‑1 (MQ=255)
ccATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGc < 2:19240/100‑1 (MQ=255)
ccATCAATATTGACCGATGCCAGCAGGCCGTGCTCTAAAAAGAAGTCGGCTTTTCGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATACGATGGc > 2:2233340/1‑100 (MQ=255)
cATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCt > 1:2790827/1‑100 (MQ=255)
cATCAATATTGACCGATGCCAGCAGCCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGc < 1:2510087/99‑1 (MQ=255)
aTCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTg > 2:2461005/1‑100 (MQ=255)
tCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGa > 1:3174802/1‑100 (MQ=255)
aaTATTGACCGATGCAAGCACGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACg < 1:2296848/100‑1 (MQ=255)
atatTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACgg > 1:1498230/1‑100 (MQ=255)
atTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTg > 1:2531562/1‑100 (MQ=255)
atTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTg < 2:3527216/100‑1 (MQ=255)
atTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTg < 2:2606299/100‑1 (MQ=255)
ttGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGa < 1:1798912/100‑1 (MQ=255)
naCCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGAtt > 2:2815686/2‑100 (MQ=255)
gACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGAtt < 1:1924185/100‑1 (MQ=255)
gACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGAtt > 1:3262692/1‑100 (MQ=255)
ccGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTc < 2:3471494/100‑1 (MQ=255)
ccGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTc < 1:623144/100‑1 (MQ=255)
gATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTTTTTTTTCTTATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAg > 2:219980/1‑100 (MQ=255)
gATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAg < 2:1203523/100‑1 (MQ=255)
cagcagGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTaaaa > 1:114219/1‑100 (MQ=255)
agGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGc < 2:1827965/100‑1 (MQ=255)
ggCCGTGCTCTATAAAGAAGTCGGCTTTTTTTTTTTTTTTTTCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAACTa > 2:355489/1‑97 (MQ=255)
ggCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCg < 1:867210/100‑1 (MQ=255)
ccGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGAt < 2:2407850/100‑1 (MQ=255)
ccGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGAt < 1:1567813/100‑1 (MQ=255)
tctATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCcggcg > 1:1345334/1‑100 (MQ=255)
tctATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCcggcg > 1:352014/1‑100 (MQ=255)
ctATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCcggcgg < 1:2566751/100‑1 (MQ=255)
ctATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCcggcgg > 2:3654011/1‑100 (MQ=255)
ctATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCcggcgg < 1:1198883/100‑1 (MQ=255)
ctATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCAGATCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCcggcg > 2:160003/1‑99 (MQ=255)
tataAAGAAGTCGGCTTTTTGCGCCATCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATCGCGATCCgacggc > 2:1793025/1‑100 (MQ=255)
taAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAg < 2:2913182/100‑1 (MQ=255)
taAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAg > 1:831625/1‑100 (MQ=255)
aaaGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAgg < 2:3022959/100‑1 (MQ=255)
aagaagTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGc < 1:3529245/100‑1 (MQ=255)
agTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTg > 1:278026/1‑100 (MQ=255)
gTCGGCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGc < 2:2340732/100‑1 (MQ=255)
tCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCg > 1:1009719/1‑100 (MQ=255)
cGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGa < 2:2132079/100‑1 (MQ=255)
cGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGa > 2:3991001/1‑100 (MQ=255)
gCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAg < 2:2528866/100‑1 (MQ=255)
gCTTTTTGCGCCAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAg < 2:734798/100‑1 (MQ=255)
tttttGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAggg < 2:3737552/100‑1 (MQ=255)
tttttGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAggg > 1:903682/1‑100 (MQ=255)
tttttGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAggg > 1:89035/1‑100 (MQ=255)
tttttGCGCCAGCAAATCAATCTGCTCTTTCACAACCGCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAggg < 2:3780948/100‑1 (MQ=255)
ttttGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGt < 1:3665040/100‑1 (MQ=255)
ttttGCGCCAGCAAATCAATATGCTCTTTCACAACCTACATCCGAGGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTACGAAGGGt > 2:2743277/1‑100 (MQ=255)
tGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCa > 1:3905454/1‑100 (MQ=255)
cgcCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAg > 2:1140192/1‑100 (MQ=255)
gcCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAgg < 2:3877212/100‑1 (MQ=255)
gcCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAgg < 1:1440431/100‑1 (MQ=255)
ccAGCAAATCAATCAGCTCTTTCACAACCTGCATCCGATGGCTGACGGTGATTTCAGTGAAATAGCGAGCCGGCGGCAGGCGTTGCGAAGGGTTCAAgg < 2:1029737/99‑1 (MQ=255)
ccAGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAggg > 1:4112147/1‑100 (MQ=255)
aGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGAt > 2:437193/1‑100 (MQ=255)
aGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGAt > 1:695651/1‑100 (MQ=255)
aGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGAt > 1:2036862/1‑100 (MQ=255)
aGCAAATCAATCAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGAt < 1:160006/100‑1 (MQ=255)
gCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATg > 2:2687574/1‑100 (MQ=255)
aaaTCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCg < 1:3355433/100‑1 (MQ=255)
aatcaatcTGCTCTTTCACCACCTCCATCCGATGGCTGACGGTGCTTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGc > 2:3596762/1‑98 (MQ=255)
atcaatcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTg < 2:848122/100‑1 (MQ=255)
atcaatcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTg < 2:3542308/100‑1 (MQ=255)
atcaatcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGCTCAAGGGATGCGTg > 2:1103713/1‑100 (MQ=255)
tcaatcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGCAGGGTTCAAGGGATGCGTGa < 2:402292/100‑1 (MQ=255)
tcaatcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGa < 1:437196/100‑1 (MQ=255)
tcaatcAGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGa < 2:3195895/100‑1 (MQ=255)
caatcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGac < 2:2515928/100‑1 (MQ=255)
atcTGCTCTTTCACAGCCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGac < 1:3995768/98‑1 (MQ=255)
tcTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGGTTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAGGGGTTCAAGGGATGCGTGaccac > 2:3126430/1‑100 (MQ=255)
tGCTCTTTTACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGACCACCg > 2:2307930/1‑100 (MQ=255)
|
TGCTGACGCAGGGCGATGAGCGTAGGGCCATCAATATTGACCGATGCCAGCAGGCCGTGCTCTATAAAGAAGTCGGCTTTTTGCGCCAGCAAATCAATCTGCTCTTTCACAACCTCCATCCGATGGCTGACGGTGATTTCAGTAAAATAGCGATCCGGCGGCAGGCGTTGCGAAGGGTTCAAGGGATGCGTGACCACCG > NC_000913/3678838‑3679036
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
