Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F56 I0 R1 215 141.2 6785521 95.3% 6466601 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,218,198 C→T 19.4% Q293Q (CAG→CAA)  aer ← fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,218,1980CT19.4% 330.2 / 63.9 149Q293Q (CAG→CAA) aerfused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component
Reads supporting (aligned to +/- strand):  ref base C (53/67);  new base T (12/17);  total (65/84)
Fisher's exact test for biased strand distribution p-value = 8.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01

Only 100 of 152 total aligned reads displayed.

CGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGACACCTGGCTTG  >  NC_000913/3218099‑3218295
                                                                                                   |                                                                                                 
cGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGc                                                                                                   <  1:571042/100‑1 (MQ=255)
  cATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTg                                                                                                 <  1:1173909/100‑1 (MQ=255)
      aCTGGCAGTGATTGACAGTTTATCTGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCCCCGTTTGCTGAAc                                                                                              >  1:3015441/1‑99 (MQ=255)
      aCTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACg                                                                                             <  2:3391429/100‑1 (MQ=255)
      aCTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACg                                                                                             <  2:3032786/100‑1 (MQ=255)
      aCTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACg                                                                                             <  1:1158865/100‑1 (MQ=255)
      aCTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACg                                                                                             <  2:1969436/100‑1 (MQ=255)
       cTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACg                                                                                             <  1:1477505/99‑1 (MQ=255)
       cTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGt                                                                                            >  1:2904434/1‑100 (MQ=255)
        tGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGtt                                                                                           >  1:1864600/1‑100 (MQ=255)
        tGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGtt                                                                                           >  1:2697932/1‑100 (MQ=255)
         ggCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGTCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTa                                                                                          >  1:1808707/1‑100 (MQ=255)
         ggCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTa                                                                                          <  2:2022064/100‑1 (MQ=255)
         ggCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTa                                                                                          <  2:2263989/100‑1 (MQ=255)
         ggCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTa                                                                                          >  1:1294966/1‑100 (MQ=255)
           cAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATc                                                                                        >  2:2996122/1‑100 (MQ=255)
             gTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATCGTCGCCACCGTTTGCTGAACGTTATCaa                                                                                      >  1:1040288/1‑100 (MQ=255)
              tGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAAc                                                                                     <  1:2145011/100‑1 (MQ=255)
                aTTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTg                                                                                   <  2:2992185/100‑1 (MQ=255)
                  tGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTc                                                                                 <  1:2940244/100‑1 (MQ=255)
                  tGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTc                                                                                 >  1:923644/1‑100 (MQ=255)
                  tGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACAGt                                                                                  >  1:1019159/1‑99 (MQ=255)
                     cAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTctgc                                                                              >  1:3199000/1‑100 (MQ=255)
                      aGTTTATCGGCAGCTGACGCCGGGGCAGAGTTCTGTTTCACCGACGCCGCCAGTTGGTTCATGGTCGCCACCGTTTGCTGGACGTTATCAACTGTctggt                                                                             >  1:1433453/1‑98 (MQ=255)
                       gTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTctgctg                                                                            >  2:1024020/1‑100 (MQ=255)
                       gTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTctgctg                                                                            >  1:2274533/1‑100 (MQ=255)
                        tttATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTgg                                                                           <  2:646593/100‑1 (MQ=255)
                        tttATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTgg                                                                           <  1:169509/100‑1 (MQ=255)
                        tttATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTgg                                                                           <  2:2247823/100‑1 (MQ=255)
                          tATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGt                                                                         >  1:64261/1‑100 (MQ=255)
                          atctggCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGt                                                                         <  2:1529029/96‑1 (MQ=255)
                           aTCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTa                                                                        <  2:3309105/100‑1 (MQ=255)
                           aTCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTa                                                                        <  1:1690071/100‑1 (MQ=255)
                           aTCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTa                                                                        <  2:1988033/100‑1 (MQ=255)
                             cGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATg                                                                      >  2:3198324/1‑100 (MQ=255)
                              ggCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTagat                                                                     >  1:1529022/1‑97 (MQ=255)
                              ggCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATgt                                                                     >  2:2821229/1‑100 (MQ=255)
                              gacAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATgt                                                                     >  2:2964690/3‑100 (MQ=255)
                               gCAGCCGACGTCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATgtt                                                                    <  1:2231908/100‑1 (MQ=255)
                                 aGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATgttcg                                                                  <  2:2147196/100‑1 (MQ=255)
                                   ccGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATgttcgtt                                                                >  2:1726382/1‑100 (MQ=255)
                                   ccGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATgttcgtt                                                                <  2:1011065/100‑1 (MQ=255)
                                     gACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCgttca                                                              <  1:864113/100‑1 (MQ=255)
                                       cGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCCTTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATAAACTGTCTGCTGGGTATGTTCgtttagt                                                            >  1:2994378/1‑100 (MQ=255)
                                       cGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCgttcagt                                                            <  2:2966840/100‑1 (MQ=255)
                                       cGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCgttcagt                                                            <  2:1243051/100‑1 (MQ=255)
                                        gCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCgttcagtt                                                           <  1:2698631/100‑1 (MQ=255)
                                         ccGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCgttcagtt                                                           >  1:550740/1‑99 (MQ=255)
                                         ccGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCgttcagttc                                                          >  2:2225308/1‑100 (MQ=255)
                                           gTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCgttcagtt                                                           <  1:2351573/97‑1 (MQ=255)
                                            tGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATc                                                       <  1:1984143/100‑1 (MQ=255)
                                            tGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATc                                                       <  1:732517/100‑1 (MQ=255)
                                            tGGCAGAGCTCTGTTTCACAGTCACGGGCATGTGGTTGATGTTCGCCACCGTTTGCTTATCGTTATCAACGGTATGCTGCGTATGTTCcttctgtt                                                           <  1:1505459/96‑1 (MQ=255)
                                             ggCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCg                                                      <  2:1616439/100‑1 (MQ=255)
                                                 gagTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGc                                                  <  1:510278/100‑1 (MQ=255)
                                                   gTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCt                                                >  1:1413079/1‑100 (MQ=255)
                                                     tCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCttt                                              >  2:2040028/1‑100 (MQ=255)
                                                       tGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCg                                            <  2:1359097/100‑1 (MQ=255)
                                                       tGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCg                                            <  2:1808718/100‑1 (MQ=255)
                                                        gTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGc                                           >  1:2578080/1‑100 (MQ=255)
                                                          ttCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTCTCACCTGTCTGCTGGGTATGTTCGGTCAGTTCCTCGGTGCCTTTCGCCa                                         >  1:2965514/1‑100 (MQ=255)
                                                          ttCACCGACGCCGCCATTTGGTTCATGGTCGCAACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCa                                         >  2:2939827/1‑100 (MQ=255)
                                                             aCCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCg                                      >  2:3081350/1‑100 (MQ=255)
                                                              ccGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGt                                     >  2:3296587/1‑100 (MQ=255)
                                                               cGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTTCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGt                                     <  1:2237159/99‑1 (MQ=255)
                                                                  cgccgcCATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCa                                 <  2:2321684/100‑1 (MQ=255)
                                                                     cgccATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTGAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTg                              <  1:2885353/100‑1 (MQ=255)
                                                                      gccATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGc                             <  2:1935723/100‑1 (MQ=255)
                                                                      gccATTTGGTTCATGGTCGCCACCGTTTGCTGACCGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTg                              <  1:3227108/99‑1 (MQ=255)
                                                                      gccATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGc                             >  2:3153996/1‑100 (MQ=255)
                                                                      gccATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGc                             <  2:2647903/100‑1 (MQ=255)
                                                                      gccATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGc                             <  2:2647945/100‑1 (MQ=255)
                                                                        cATTTGGTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGcc                            >  1:2599082/1‑99 (MQ=255)
                                                                        cATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCa                           <  2:2096237/100‑1 (MQ=255)
                                                                        cATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCa                           <  1:207842/100‑1 (MQ=255)
                                                                         aTTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCAt                          <  1:641325/100‑1 (MQ=255)
                                                                            tGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTc                       >  2:3098851/1‑100 (MQ=255)
                                                                            tGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTc                       <  2:1472445/100‑1 (MQ=255)
                                                                             tattCATGGTCGCCACCGTTTGTTGAATCTTATCATCTGTCTGCTTCGCATGTTCCTCCCGTTCATCGCTGGCTTTCCGCAGCGTCTCATGGCCATTTCt                      <  1:747640/98‑1 (MQ=255)
                                                                             ggTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCt                      >  2:66402/1‑100 (MQ=255)
                                                                             ggTTCATGGTCGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCt                      >  1:931181/1‑100 (MQ=255)
                                                                              gTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTg                     <  2:2914892/100‑1 (MQ=255)
                                                                                tCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGac                   <  2:1218718/100‑1 (MQ=255)
                                                                                 cagggTGGCGACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGac                   <  1:1210046/96‑1 (MQ=255)
                                                                                  aTGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGacac                 >  2:50137/1‑100 (MQ=255)
                                                                                    ggTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTg               <  1:2821206/100‑1 (MQ=255)
                                                                                     gTCGCCACCGTTTGCTGAACGTTATCACCTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTgg              >  2:444374/1‑100 (MQ=255)
                                                                                     gTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTgg              >  2:2868935/1‑100 (MQ=255)
                                                                                     gTCGCCACCGTTTGCTGAACGTTATCAACTGTCTCCTGGGAACGTTCGTTCATTTCACCAGTGCCTTTCCCCACCGACTCACTCCCATTTCAGacac                 >  1:1906189/1‑97 (MQ=255)
                                                                                      tCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGa             <  2:3109679/100‑1 (MQ=255)
                                                                                      tCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGa             >  2:1650201/1‑100 (MQ=255)
                                                                                       cGCCACCGTTTGTTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTgg              >  1:1556595/1‑98 (MQ=255)
                                                                                       cGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGac            <  2:918685/100‑1 (MQ=255)
                                                                                          cACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGACAcc         <  1:2491960/100‑1 (MQ=255)
                                                                                            ccGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGACACCTg       <  1:2895032/100‑1 (MQ=255)
                                                                                            ccGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGACACCTg       >  1:1836090/1‑100 (MQ=255)
                                                                                              gTTTGCCGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGACACCTGGc     <  2:1432247/100‑1 (MQ=255)
                                                                                                 tGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGACACCTGGCTTg  <  2:371299/100‑1 (MQ=255)
                                                                                                 tGCTGAACGTTATCAACTGTCTGCGGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGACACCTGGCTTg  <  1:3389249/100‑1 (MQ=255)
                                                                                                   cTGAACGTTACCAACGGTGTGCTGGGTAGGGTCGTTCAGTTCATCGGTGCCTTTCGCGAGCGTGCGACTGTCATTTCTGACACTTGTCACCTGGCt    >  1:2020246/1‑96 (MQ=255)
                                                                                                   |                                                                                                 
CGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTGCTGGGTATGTTCGTTCAGTTCATCGGTGCCTTTCGCCAGCGTCTCACTGCCATTTCTGACACTGGACACCTGGCTTG  >  NC_000913/3218099‑3218295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A