Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F142 I1 R1
|
99 |
64.8 |
3148104 |
96.3% |
3031624 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,452,339 |
A→G |
intergenic (‑3/+17) |
yfcS ← / ← yfcU |
putative periplasmic pilin chaperone/pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,452,339 | 0 | A | G | 97.5%
| 282.2
/ ‑2.3
| 81 | intergenic (‑3/+17) | yfcS/yfcU | putative periplasmic pilin chaperone/pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base G (38/41); total (38/43) |
| Fisher's exact test for biased strand distribution p-value = 4.96e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
GGCGTTACAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGATCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAATGACAGGCTTTATG > NC_000913/2452242‑2452434
|
ggCGTTACAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGATc < 1:608000/100‑1 (MQ=255)
ggCGTTACAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGATc < 1:285632/100‑1 (MQ=255)
gCGTTACAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCa > 1:1121007/1‑100 (MQ=255)
gCGTTACAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCa > 1:1441743/1‑100 (MQ=255)
gCGTTACAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCa > 1:1315754/1‑100 (MQ=255)
cGTTACAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCAt > 2:1227119/1‑100 (MQ=255)
cGTTACAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCAt > 1:170654/1‑100 (MQ=255)
tACAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTcc < 1:1313109/100‑1 (MQ=255)
aCAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCt < 1:625364/100‑1 (MQ=255)
aCAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCt > 2:238971/1‑100 (MQ=255)
aCAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCt < 1:792261/100‑1 (MQ=255)
gACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTaa > 1:658223/1‑100 (MQ=255)
cAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACg < 2:608901/100‑1 (MQ=255)
cAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACg > 2:1125514/1‑100 (MQ=255)
aGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGt > 2:879220/1‑100 (MQ=255)
gggCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGtt > 1:708083/1‑100 (MQ=255)
ggCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTa > 1:1516489/1‑100 (MQ=255)
cAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTAtt > 1:1439138/1‑100 (MQ=255)
aCAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGt < 1:124220/100‑1 (MQ=255)
cAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGtt < 2:1389056/100‑1 (MQ=255)
cAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGtt > 2:879709/1‑100 (MQ=255)
cAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGtt > 2:1356049/1‑100 (MQ=255)
aaCTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAg < 1:521099/100‑1 (MQ=255)
tGGTAGCGGTAAGCAGTAACACCAGCGTCATAGCGCCCAATTTGGTAGAGCCATGTAAATCAGACATGGGTCATTCCTTAAGCTCGTTATTGGTCAGCt < 2:261339/99‑1 (MQ=255)
ggTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTga > 1:29669/1‑100 (MQ=255)
ggTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTga > 2:899664/1‑100 (MQ=255)
gcgcTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTgaaaca > 2:285721/1‑100 (MQ=255)
cgcTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTgaaacag < 2:1441733/100‑1 (MQ=255)
gcTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTgaaacaga > 1:1018555/1‑100 (MQ=255)
tAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTgaaacagaaa < 2:223457/100‑1 (MQ=255)
aGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTgaaacagaaaca > 1:631675/1‑100 (MQ=255)
gaaGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGaaacagaaacag > 1:1057110/3‑100 (MQ=255)
cAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAgg > 1:695761/1‑100 (MQ=255)
gTAACGCCATCGTCATAGCACCCAATTTGGCAGAGCAAATTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAgggg < 2:1429475/100‑1 (MQ=255)
gTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAgggg < 1:79201/100‑1 (MQ=255)
gTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAgggg > 2:1423791/1‑100 (MQ=255)
tAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAggggg < 2:1439128/100‑1 (MQ=255)
tAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAAACAGACATGGGTCATTCCTTACTCACGTTATTGGTTAGCTGAAACAGAAACAggggg < 1:392813/100‑1 (MQ=255)
aaCGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGa > 1:608106/1‑100 (MQ=255)
ccAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCgg < 2:836439/100‑1 (MQ=255)
ttccgatctAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCggt < 2:289867/92‑1 (MQ=255)
gCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCggtgg > 1:1559376/1‑100 (MQ=255)
cGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCggtggg < 2:232197/100‑1 (MQ=255)
cGTCATAACACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCggtggg < 1:821247/100‑1 (MQ=255)
gTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCggtgggt > 1:875825/1‑100 (MQ=255)
tCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCggtgggtg < 2:1567308/100‑1 (MQ=255)
tCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCggtgggtg < 1:682311/100‑1 (MQ=255)
aTAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTc < 1:1054469/100‑1 (MQ=255)
aGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCggtagatcggaa > 1:289868/1‑91 (MQ=255)
aGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCAc < 1:1227126/100‑1 (MQ=255)
aGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCAc < 1:101078/100‑1 (MQ=255)
gCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCAcc < 2:170654/100‑1 (MQ=255)
gCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCAcc > 1:1185385/1‑100 (MQ=255)
cACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCt > 2:1419641/1‑100 (MQ=255)
cAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTg < 2:1161132/100‑1 (MQ=255)
cAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTg < 2:29669/100‑1 (MQ=255)
cAATTTGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTg < 1:1423801/100‑1 (MQ=255)
tttGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGt < 1:251912/100‑1 (MQ=255)
ttGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTc < 2:564614/100‑1 (MQ=255)
tGGCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCt < 2:695758/100‑1 (MQ=255)
gCAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGc > 2:1097019/1‑100 (MQ=255)
nagagCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCt > 2:71561/2‑100 (MQ=255)
cAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCt > 2:71813/1‑100 (MQ=255)
cAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCt < 1:1356058/100‑1 (MQ=255)
cAGAGCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCt > 2:486004/1‑100 (MQ=255)
agagCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTc > 1:938832/1‑100 (MQ=255)
gagCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTcc < 1:1242109/100‑1 (MQ=255)
gagCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTcc > 2:1403453/1‑100 (MQ=255)
agCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAACCAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTcc < 1:704566/99‑1 (MQ=255)
agCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCt > 2:327450/1‑100 (MQ=255)
gCAAAGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTcc < 1:626517/98‑1 (MQ=255)
agaGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGaa > 1:1062789/3‑100 (MQ=255)
aaaGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGaa > 2:1140633/1‑100 (MQ=255)
aaGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAAt < 2:986718/100‑1 (MQ=255)
aaGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAAt > 2:824662/1‑100 (MQ=255)
aaGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAAt < 2:81301/100‑1 (MQ=255)
aaGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAAt < 2:1315745/100‑1 (MQ=255)
aGTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAATg < 1:1125521/100‑1 (MQ=255)
gTAAATCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAATGa < 2:209129/100‑1 (MQ=255)
aaaTCAGACATGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAATGACa < 2:1185378/100‑1 (MQ=255)
aTGGGTCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAATGACAGGCTTTATg < 1:674958/100‑1 (MQ=255)
|
GGCGTTACAGACGCCAGGGCAGACAAACTGGTAGCGCTAAGCAGTAACGCCAGCGTCATAGCACCCAATTTGGCAGAGCAAAGTAAATCAGACATGGATCATTCCTTAATCACGTTATTGGTTAGCTGAAACAGAAACAGGGGGATCGGTGGGTGTCACCTGTTGCGTCTGCTCCTGAATGACAGGCTTTATG > NC_000913/2452242‑2452434
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
