Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I0 R1 328 102.7 5123138 93.4% 4785010 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,386,365 T→A 100% F169Y (TTC→TAC)  yfbL → putative M28A family peptidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,386,3650TA97.5% 376.8 / ‑2.2 116F169Y (TTC→TAC) yfbLputative M28A family peptidase
Reads supporting (aligned to +/- strand):  ref base T (2/1);  new base A (53/59);  total (55/61)
Fisher's exact test for biased strand distribution p-value = 6.06e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

Only 100 of 116 total aligned reads displayed.

GTGGCAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTTCTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCTATTACG  >  NC_000913/2386271‑2386460
                                                                                              |                                                                                               
gtgGCAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTc                                                                                            <  1:1360290/100‑1 (MQ=255)
 tgGCGGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCg                                                                                           <  2:295584/100‑1 (MQ=255)
 tgGCAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCg                                                                                           <  2:450353/100‑1 (MQ=255)
 tgGCAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCg                                                                                           >  1:2155925/1‑100 (MQ=255)
 tgGCAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCg                                                                                           <  2:830891/100‑1 (MQ=255)
  ggCAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGt                                                                                          >  1:251781/1‑100 (MQ=255)
  ggCAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGt                                                                                          <  1:1478846/100‑1 (MQ=255)
  ggCAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGt                                                                                          <  2:410361/100‑1 (MQ=255)
  ggCAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGt                                                                                          <  1:1989073/100‑1 (MQ=255)
  ggCAGGATTACTCGAACGGGCACGTTTGTTACATCAGCAAGTACCGAAACCAGGCGTGCAGCTGG‑CGCCTATGCGTCGGAAGAACCGCCCTACTTTcct                                                                                          <  1:1734418/99‑3 (MQ=255)
    cAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGTAGCTGGTAGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAg                                                                                        <  2:116743/100‑1 (MQ=255)
     aGGATTACTCGAACTGGCAGGTTTGTAACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCATCGGAAGAACCGCCCTACTTTCGTAg                                                                                        <  2:93311/99‑1 (MQ=255)
      ggATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCg                                                                                      >  1:278487/1‑100 (MQ=255)
        aTTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGAt                                                                                    <  1:1971262/100‑1 (MQ=255)
            cTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATg                                                                                   >  2:1403025/1‑97 (MQ=255)
            cTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGaaa                                                                                <  2:1905042/100‑1 (MQ=255)
            cTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGaaa                                                                                >  2:2231420/1‑100 (MQ=255)
             tCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAAt                                                                               <  2:2124735/100‑1 (MQ=255)
              cGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGGCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATg                                                                              >  1:445487/1‑100 (MQ=255)
              cGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATg                                                                              >  1:1170746/1‑100 (MQ=255)
                 aCTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATgggg                                                                           <  2:1709280/100‑1 (MQ=255)
                  cTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGa                                                                          >  2:1740280/1‑100 (MQ=255)
                   tGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAg                                                                         <  1:401643/100‑1 (MQ=255)
                   tGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAg                                                                         <  1:1296286/100‑1 (MQ=255)
                    ggCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAgc                                                                        >  1:772524/1‑100 (MQ=255)
                    ggCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAgc                                                                        >  2:1904486/1‑100 (MQ=255)
                     gCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAgcg                                                                       >  1:1704193/1‑100 (MQ=255)
                      cACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAgcgc                                                                      >  1:735843/1‑100 (MQ=255)
                        cGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCgg                                                                    <  2:2030292/100‑1 (MQ=255)
                        cGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCgg                                                                    >  1:46070/1‑100 (MQ=255)
                        cGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCAATGAAATGGGGAGCGCgg                                                                    >  1:1603305/1‑100 (MQ=255)
                         gTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGt                                                                   <  2:1227175/100‑1 (MQ=255)
                          tttGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGtg                                                                  <  2:251778/100‑1 (MQ=255)
                           ttGTTACATCAGCAAGTACCGAAAACAGGCTTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGtgc                                                                 <  1:108134/100‑1 (MQ=255)
                            tGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGtgca                                                                >  2:829291/1‑100 (MQ=255)
                            tGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGtgca                                                                >  1:2284359/1‑100 (MQ=255)
                             gTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGtgcat                                                               <  1:1371620/100‑1 (MQ=255)
                              ttACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGtgcatg                                                              >  1:2411808/1‑100 (MQ=255)
                               tACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGCTGAAATGGGGAGCGCGGtgcatgc                                                             >  2:2400169/1‑100 (MQ=255)
                                aCATCAGCAAGTACCGAAAAAAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGtgcatgca                                                            <  2:1005175/100‑1 (MQ=255)
                                 cATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGtgcatgca                                                            <  2:2074072/99‑1 (MQ=255)
                                   tCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAACAACCGCCCTACTTTCGTAGCGAGGAAATGGGCAGCGCGCTGCATGCATCt                                                         >  2:1004385/1‑100 (MQ=255)
                                    cAGCAAGTACCGAAAACGGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCtt                                                        <  1:8664/100‑1 (MQ=255)
                                      gCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCg                                                      >  2:1819733/1‑100 (MQ=255)
                                      gCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCg                                                      <  1:1218361/100‑1 (MQ=255)
                                       cAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGc                                                     >  2:545545/1‑100 (MQ=255)
                                        aaGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCt                                                    <  2:1477931/100‑1 (MQ=255)
                                         aGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCtt                                                   <  1:2471793/100‑1 (MQ=255)
                                         aGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCtt                                                   >  1:361380/1‑100 (MQ=255)
                                           tACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTTCTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGa                                                 >  2:856797/1‑100 (MQ=255)
                                           tACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGa                                                 <  1:2101610/100‑1 (MQ=255)
                                           tACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGa                                                 >  1:1374408/1‑100 (MQ=255)
                                             ccGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGAGGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGc                                               >  1:1642942/1‑100 (MQ=255)
                                                aaaaCAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTc                                            >  1:1785428/1‑100 (MQ=255)
                                                 aaaCAGGCTTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTGCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTcc                                           <  1:108524/100‑1 (MQ=255)
                                                 aaaCAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTcc                                           >  1:103277/1‑100 (MQ=255)
                                                        cGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGaaa                                    <  1:2417618/100‑1 (MQ=255)
                                                         gTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAAt                                   <  1:262415/100‑1 (MQ=255)
                                                          tGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAAtt                                  >  1:1750798/1‑100 (MQ=255)
                                                             aGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAAt                               >  1:642734/1‑100 (MQ=255)
                                                              gCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATg                              >  1:1241342/1‑100 (MQ=255)
                                                              gCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATg                              <  2:1046246/100‑1 (MQ=255)
                                                              gCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATg                              >  2:527794/1‑100 (MQ=255)
                                                              gCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATg                              >  1:1980276/1‑100 (MQ=255)
                                                              gCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATg                              <  1:2271402/100‑1 (MQ=255)
                                                              gCTGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATg                              >  2:1901966/1‑100 (MQ=255)
                                                               cttgTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGa                             <  2:2476634/97‑1 (MQ=255)
                                                                tGGTCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGAt                            >  1:2409408/1‑100 (MQ=255)
                                                                 gggcGCCTATGTGTCGGAAGAACCGGCCTTCTTTCGTAGCGATGAAATGGTGACCGCGGTGCATGCAGCTTCGCTTTAGCGTCCAGTGAAACTAAGGAt                            <  2:707863/96‑1 (MQ=255)
                                                                  ctCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAg                          <  2:1018418/99‑1 (MQ=255)
                                                                   tCGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGc                         <  1:810230/100‑1 (MQ=255)
                                                                    cGCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAgag                        >  1:1018426/1‑98 (MQ=255)
                                                                     gcttATGCGTCTGGAGAACCGCCCTCCTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGACCAGTGAAATTAATGATAGCa                        <  2:2153956/96‑1 (MQ=255)
                                                                     gCCTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCAc                       >  1:193937/1‑100 (MQ=255)
                                                                      ccTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACt                      >  2:1713158/1‑100 (MQ=255)
                                                                       cTATGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTg                     <  1:955984/100‑1 (MQ=255)
                                                                        tATGCGTCGGAAGACCCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTgg                    <  1:2539377/100‑1 (MQ=255)
                                                                         aTGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGga                   <  1:841647/100‑1 (MQ=255)
                                                                         aTGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGga                   <  1:1575992/100‑1 (MQ=255)
                                                                         aTGCGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGga                   <  1:1820424/100‑1 (MQ=255)
                                                                          tGCGTCGGAAGAACCGCCCTACTTCTGTAGCGATGAATCGGGTAGACAGGTGTATGCAGCTTCGATTGAGCGTTTAGTGATATTATTGATAACACTTgag                  <  2:852786/100‑1 (MQ=255)
                                                                            cGTCGGAAGAACCGCCCTACTTTCGTAGCGCTGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAgat                >  2:159794/1‑100 (MQ=255)
                                                                            cGTCGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGgaga                 >  1:1462440/1‑99 (MQ=255)
                                                                               cGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAgctgat             >  2:2488250/1‑100 (MQ=255)
                                                                               cGGAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAgatgat             >  1:1324290/1‑100 (MQ=255)
                                                                                ggAAGAACCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGAtt            <  1:1977475/100‑1 (MQ=255)
                                                                                 gaagaaCCGCCCTTCTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTg           >  2:1324102/1‑100 (MQ=255)
                                                                                  aagaaCCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTgg          <  1:309567/100‑1 (MQ=255)
                                                                                   agaaCCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGc         <  2:152901/100‑1 (MQ=255)
                                                                                   agaaCCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGc         <  1:1434705/100‑1 (MQ=255)
                                                                                   agaaCCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGc         <  1:1421959/100‑1 (MQ=255)
                                                                                    gaaCCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCt        <  1:137201/100‑1 (MQ=255)
                                                                                      aCCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCTAt      <  1:351336/100‑1 (MQ=255)
                                                                                      aCCGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCTAt      >  1:602211/1‑100 (MQ=255)
                                                                                       ccGCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCTAtt     >  2:1678867/1‑100 (MQ=255)
                                                                                         gCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCTATTa    <  2:779633/99‑1 (MQ=255)
                                                                                         gCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCTATTAc   <  2:421885/100‑1 (MQ=255)
                                                                                         gCCCTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCTATTAc   >  1:2335618/1‑100 (MQ=255)
                                                                                          cccTACTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCTATTACg  <  1:294639/100‑1 (MQ=255)
                                                                                          cccTACTTGCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCTATTa    <  2:2074564/98‑1 (MQ=255)
                                                                                              |                                                                                               
GTGGCAGGATTACTCGAACTGGCACGTTTGTTACATCAGCAAGTACCGAAAACAGGCGTGCAGCTGGTCGCCTATGCGTCGGAAGAACCGCCCTTCTTTCGTAGCGATGAAATGGGGAGCGCGGTGCATGCAGCTTCGCTTGAGCGTCCAGTGAAATTAATGATAGCACTGGAGATGATTGGCTATTACG  >  NC_000913/2386271‑2386460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A