Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I0 R1 328 102.7 5123138 93.4% 4785010 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,547,319 C→A 100% R742S (CGT→AGT)  fimD → fimbrial usher outer membrane porin protein; FimCD chaperone‑usher

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,547,3190CA100.0% 321.6 / ‑6.7 98R742S (CGT→AGT) fimDfimbrial usher outer membrane porin protein; FimCD chaperone‑usher
Reads supporting (aligned to +/- strand):  ref base C (0/1);  major base A (41/55);  minor base G (0/1);  total (41/57)

GCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGCGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGATTTAGAT  >  NC_000913/4547222‑4547411
                                                                                                 |                                                                                            
gCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGt                                                                                            <  2:1607467/100‑1 (MQ=255)
  tGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGTCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTgg                                                                                          <  2:293310/100‑1 (MQ=255)
  tGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTgg                                                                                          <  2:776054/100‑1 (MQ=255)
  tGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTgg                                                                                          <  1:1282941/100‑1 (MQ=255)
    gggCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGTCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGtt                                                                                        <  2:1638478/100‑1 (MQ=255)
        aGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATg                                                                                     <  2:1475483/99‑1 (MQ=255)
        aGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGc                                                                                    >  1:197551/1‑100 (MQ=255)
        aGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGc                                                                                    <  2:1332128/100‑1 (MQ=255)
        aGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGc                                                                                    <  2:1612733/100‑1 (MQ=255)
        aGCCGGTAAACGATACGGTCGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAGGTCGAAAACCAGACCGGGCTGCGTACCGACTGGAGTg                                                                                           <  2:1905410/93‑1 (MQ=255)
         gCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATg                                                                                     >  2:1870289/1‑98 (MQ=255)
         gCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGcc                                                                                   >  1:1447758/1‑100 (MQ=255)
          ccGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCg                                                                                  <  1:2307961/100‑1 (MQ=255)
          ccGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCg                                                                                  <  2:2103293/100‑1 (MQ=255)
           cGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGt                                                                                 >  2:873424/1‑100 (MQ=255)
           cGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGCGTGCGTACCGACTGGAGTGGTTATGCCGt                                                                                 >  2:873305/1‑100 (MQ=255)
            gTTAAACGATACGGTGGTGCTTGTTAGAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGtg                                                                                >  2:2311805/1‑100 (MQ=255)
            gTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGtg                                                                                >  2:2433383/1‑100 (MQ=255)
              tAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGtgct                                                                              >  1:1223158/1‑100 (MQ=255)
               aaaCGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGtgctg                                                                             <  2:505632/100‑1 (MQ=255)
                aaCTATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGAAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGtg                                                                                <  2:959575/96‑1 (MQ=255)
                aaCGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGtgctgc                                                                            >  1:555811/1‑100 (MQ=255)
                 aCGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGcc                                                                           <  2:2369831/100‑1 (MQ=255)
                 aCGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGcc                                                                           <  1:302082/100‑1 (MQ=255)
                 aCGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGcc                                                                           <  2:2452222/100‑1 (MQ=255)
                 aCGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGcc                                                                           <  1:2224611/100‑1 (MQ=255)
                   gATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCtt                                                                         >  1:1457453/1‑100 (MQ=255)
                   gATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCtt                                                                         >  1:2279549/1‑100 (MQ=255)
                    aTACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTa                                                                        >  1:1501995/1‑100 (MQ=255)
                      aCGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATg                                                                      <  1:2311819/100‑1 (MQ=255)
                      aCGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATg                                                                      <  2:611297/100‑1 (MQ=255)
                       cGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGc                                                                     >  1:1390064/1‑100 (MQ=255)
                        ggtggtGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGcc                                                                    <  1:2283505/100‑1 (MQ=255)
                          tggtgCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCAc                                                                  <  1:1882781/100‑1 (MQ=255)
                           ggtgCTAGTTAAAGCGCCTGGCGCACAAGATGCAAAAGCCGAAAACCAGCCGGGGGTGCTTACCGACTGCACTGGATACACCGTGCTGCCTTATGCCAc                                                                  >  2:2248097/1‑99 (MQ=255)
                            gtgCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTg                                                                <  2:850289/100‑1 (MQ=255)
                             tgCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGa                                                               >  2:2237270/1‑100 (MQ=255)
                              gCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGaa                                                              >  2:832878/1‑100 (MQ=255)
                              gCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGaa                                                              >  1:1771966/1‑100 (MQ=255)
                               cTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAat                                                             <  1:141940/100‑1 (MQ=255)
                               cTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAat                                                             <  1:740705/100‑1 (MQ=255)
                                 tGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAatat                                                           >  2:983641/1‑100 (MQ=255)
                                 tGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAatat                                                           <  1:357188/100‑1 (MQ=255)
                                  gTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATc                                                          >  2:1414913/1‑100 (MQ=255)
                                   ttAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGACGTGCTGCCTTATGGCACTGAATATCg                                                         >  2:1269778/1‑100 (MQ=255)
                                    tAAAGCGGCTGGCGCAAAAGATGCAAAAGTGGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCgg                                                        <  2:2248200/100‑1 (MQ=255)
                                    tAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCgg                                                        <  1:2237284/100‑1 (MQ=255)
                                    tAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCgg                                                        >  2:921512/1‑100 (MQ=255)
                                    tAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCgg                                                        >  1:1283298/1‑100 (MQ=255)
                                     aaaGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGTTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCgg                                                        <  1:1472424/99‑1 (MQ=255)
                                     aaaGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCggg                                                       >  2:745820/1‑100 (MQ=255)
                                       aGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGaa                                                     <  1:2119380/100‑1 (MQ=255)
                                       aGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGaa                                                     >  1:700617/1‑100 (MQ=255)
                                        gcgcCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGaaa                                                    >  2:819728/1‑100 (MQ=255)
                                        gcgcCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGAGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGaaa                                                    >  1:1486093/1‑100 (MQ=255)
                                          gcCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAAt                                                  >  2:1255215/1‑100 (MQ=255)
                                           ccTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATa                                                 >  1:2431990/1‑100 (MQ=255)
                                              ggggcAAAAGAGGCAAAAGGCGAAAGCCAGACGGGGGTGCGGACCGACTGGGGTGGGTATGCCGTGGTGCCTTATGCCACTGAATATCGGGAAAAt                                                  <  2:1740808/93‑1 (MQ=255)
                                              ggCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATagag                                              <  1:1418555/100‑1 (MQ=255)
                                               gcgcAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGt                                             <  1:393104/100‑1 (MQ=255)
                                                 gcAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTgg                                           <  2:1758365/100‑1 (MQ=255)
                                                   aaaaGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGgcg                                         <  1:599012/100‑1 (MQ=255)
                                                        aTGCAAAAGTCGAAACCCAGACGGGGGTGAGTACCGACTGGAGTGGTTATGCCGTGTTGCCGTATGCCACTGAATATCGGGTAAATGGAGCGGCGCTgg                                     >  2:1489703/1‑99 (MQ=255)
                                                         tGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGAt                                   >  1:2224442/1‑100 (MQ=255)
                                                          gCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATa                                  <  2:135198/100‑1 (MQ=255)
                                                           cAAAAGTCGAAAACCAGACGGGGGTGCGTACCGGCTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATAc                                 >  2:1693337/1‑100 (MQ=255)
                                                           cAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATAc                                 >  1:1083568/1‑100 (MQ=255)
                                                           cAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATAc                                 >  2:2009050/1‑100 (MQ=255)
                                                            aaaaGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATAcc                                <  1:1309126/100‑1 (MQ=255)
                                                            aaaaGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATAcc                                <  2:2391882/100‑1 (MQ=255)
                                                             aaaGTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCa                               <  2:1559047/100‑1 (MQ=255)
                                                                gTCGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATa                            >  1:58010/1‑100 (MQ=255)
                                                                  cGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATAcc                          <  1:545801/100‑1 (MQ=255)
                                                                  cGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATAcc                          >  1:1247077/1‑100 (MQ=255)
                                                                  cGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATAcc                          >  1:1745867/1‑100 (MQ=255)
                                                                  cGAAAACCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATAc                           <  2:1277394/99‑1 (MQ=255)
                                                                       aCCAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGc                     >  2:62601/1‑100 (MQ=255)
                                                                        ccAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCt                    <  2:1090823/100‑1 (MQ=255)
                                                                        ccAGACGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCt                    <  2:327901/100‑1 (MQ=255)
                                                                           gACGGGGGGGCGTACCGACTGGCGTGGTTATGGCGTGCTGCCGTATGCCACTGAATAGCGGGAAAAGAGAGTGGCGCTGGATACCAATACCCTg                       <  2:1524294/94‑1 (MQ=255)
                                                                             cGGGGGTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATaa               >  1:1237687/1‑100 (MQ=255)
                                                                              gggggTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAAc              <  1:1145800/100‑1 (MQ=255)
                                                                               ggggTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACg             <  2:1615445/100‑1 (MQ=255)
                                                                                 ggTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGt            <  2:2271762/99‑1 (MQ=255)
                                                                                 ggTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTc           <  1:283616/100‑1 (MQ=255)
                                                                                  gTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCg          >  1:2183094/1‑100 (MQ=255)
                                                                                  gTGCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACAAATACCCTGGCTGATAACGTCg          <  1:1624244/100‑1 (MQ=255)
                                                                                    gCGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGAt        <  1:2101340/100‑1 (MQ=255)
                                                                                     cGTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGAtt       >  2:77034/1‑100 (MQ=255)
                                                                                      gTACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGAttt      <  1:1528364/100‑1 (MQ=255)
                                                                                       tACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGATTTa     <  1:808889/100‑1 (MQ=255)
                                                                                       tACCGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGATTTa     <  1:1004087/100‑1 (MQ=255)
                                                                                         ccGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAGTAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGATTTAGa   <  1:2398200/100‑1 (MQ=255)
                                                                                         ccGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACGCTGGCTGATAACGTCGATTTAg    >  2:924433/1‑99 (MQ=255)
                                                                                         ccGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGATTTAGa   <  1:745827/100‑1 (MQ=255)
                                                                                          cGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGATTTAGAt  <  1:1543721/100‑1 (MQ=255)
                                                                                          cGACTGGAGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGATTTAGAt  <  2:263746/100‑1 (MQ=255)
                                                                                          cGACTGGAGTGGTTATGCCGTGCTGCCATATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGATTTAGAt  <  1:2137306/100‑1 (MQ=255)
                                                                                                 |                                                                                            
GCTGGGGCAGCCGTTAAACGATACGGTGGTGCTTGTTAAAGCGCCTGGCGCAAAAGATGCAAAAGTCGAAAACCAGACGGGGGTGCGTACCGACTGGCGTGGTTATGCCGTGCTGCCTTATGCCACTGAATATCGGGAAAATAGAGTGGCGCTGGATACCAATACCCTGGCTGATAACGTCGATTTAGAT  >  NC_000913/4547222‑4547411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A