Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F212 I1 R1
|
174 |
80.0 |
3892211 |
96.7% |
3763768 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,178,296 |
A→T |
intergenic (+8/‑151) |
nusG → / → rplK |
transcription termination factor/50S ribosomal subunit protein L11 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,178,296 | 0 | A | T | 92.1%
| 243.4
/ 10.5
| 76 | intergenic (+8/‑151) | nusG/rplK | transcription termination factor/50S ribosomal subunit protein L11 |
| Reads supporting (aligned to +/- strand): ref base A (4/2); new base T (43/27); total (47/29) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01 |
ACGAGAAATCTCGTCTGAAAGTGTCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTA > NC_000913/4178200‑4178395
|
aCGAGAAATCTCGTCTGAAAGTGTCTGTTTCTATCTTCGGTCCTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCa > 2:926210/1‑100 (MQ=255)
gagaAATCTCGTCTGAAAGTGTCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCaaa < 1:1210264/100‑1 (MQ=255)
gagaAATCTCGTCTGAAAGTGTCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCaaa > 2:750638/1‑100 (MQ=255)
tctcGTCTGAAAGTGTCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAgcg < 2:513411/100‑1 (MQ=255)
ctcGTCTGAAAGTGTCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAgcgg > 1:675068/1‑100 (MQ=255)
cGTCTGAAAGTGTCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAgcggcg < 2:1171636/100‑1 (MQ=255)
ntCTGAAAGTGTCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGa > 1:1639045/2‑100 (MQ=255)
cTGAAAGTGTCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGAtt > 1:572088/1‑100 (MQ=255)
tGAAAGTGTCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGAttt > 1:808725/1‑100 (MQ=255)
gtgtCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCg < 2:1041326/100‑1 (MQ=255)
gtCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAAACCAGCGTTCAAAAAAGCGGCGATTTAATCGtt > 1:596539/1‑100 (MQ=255)
tCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAAAAAAAAATAAAAAAAAGCGGCGATTTAATCGTTg < 1:547250/100‑1 (MQ=255)
cTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGc > 2:955403/1‑100 (MQ=255)
cTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGc > 1:1739377/1‑100 (MQ=255)
cTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGc < 2:1124618/100‑1 (MQ=255)
tGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGca < 2:1530649/100‑1 (MQ=255)
tGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGca > 1:68882/1‑100 (MQ=255)
gTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGcac > 2:567421/1‑100 (MQ=255)
tttCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGcaca > 2:373140/1‑100 (MQ=255)
aTCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCg > 2:352538/1‑100 (MQ=255)
aTCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCg > 2:111420/1‑100 (MQ=255)
cTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTg > 1:146463/1‑100 (MQ=255)
cTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTg < 2:295786/100‑1 (MQ=255)
tCGGTCGTGCGACCGCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTga < 2:1912126/99‑1 (MQ=255)
tCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTgag < 1:567419/100‑1 (MQ=255)
cGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTgaga < 1:1384088/100‑1 (MQ=255)
tCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTg < 2:401610/100‑1 (MQ=255)
gTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTggn < 2:419907/100‑2 (MQ=255)
gTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGa > 1:1030291/1‑100 (MQ=255)
gTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGa < 1:953961/100‑1 (MQ=255)
tGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGaa < 1:538010/100‑1 (MQ=255)
gCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAAt > 1:1061507/1‑100 (MQ=255)
gcccccGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACCAGGCGTGAGATTGGAAtcc > 1:825972/3‑98 (MQ=255)
ccccGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACaa > 2:1320177/1‑100 (MQ=255)
cccGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAAt < 2:515701/100‑1 (MQ=255)
ccGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAAtt > 2:185757/1‑100 (MQ=255)
gTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTcg < 1:373138/100‑1 (MQ=255)
gTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTcg < 1:1539966/100‑1 (MQ=255)
tAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTcgc < 2:275015/100‑1 (MQ=255)
gagCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCgcgc > 2:278793/1‑100 (MQ=255)
agCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGcc > 2:1352528/1‑100 (MQ=255)
tGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCttt > 2:778482/1‑100 (MQ=255)
tGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCttt > 2:1254072/1‑100 (MQ=255)
ggACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCtttt > 1:1633233/1‑100 (MQ=255)
cTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAGTTTCGCGCCTTTTGtt > 1:1137228/1‑100 (MQ=255)
cTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGtt > 2:738793/1‑100 (MQ=255)
ttCAGCCAGGTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGttt < 2:517870/100‑1 (MQ=255)
tCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGtttt > 1:1867910/1‑100 (MQ=255)
tCAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGtttt > 1:36643/1‑100 (MQ=255)
cAGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGttttt > 1:259964/1‑100 (MQ=255)
aGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTa < 1:1453155/100‑1 (MQ=255)
aGCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTa < 1:860178/100‑1 (MQ=255)
gCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAt > 2:1216267/1‑100 (MQ=255)
gCCAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAt < 2:1591065/100‑1 (MQ=255)
ccAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATg > 1:1075450/1‑100 (MQ=255)
ccAGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATg < 2:23512/100‑1 (MQ=255)
aGGTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATggg < 1:1446879/100‑1 (MQ=255)
ggTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGc > 2:1119921/1‑100 (MQ=255)
ggTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGc > 1:835774/1‑100 (MQ=255)
ggTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGc > 1:1874545/1‑100 (MQ=255)
gTTGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGcc > 2:1491886/1‑100 (MQ=255)
tGAAAAAGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCtt > 1:960008/1‑100 (MQ=255)
aaaaaGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGc > 1:1141774/1‑100 (MQ=255)
aaaaGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGcc > 2:1739883/1‑100 (MQ=255)
aaaaGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGcc < 1:1631162/100‑1 (MQ=255)
aGCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGt > 2:583805/1‑100 (MQ=255)
gCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTa > 1:1543314/1‑100 (MQ=255)
gCCTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTa > 2:1166615/1‑100 (MQ=255)
ccTAACCCAGCTTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaa < 2:377879/100‑1 (MQ=255)
cTAACCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaaa < 2:1639055/100‑1 (MQ=255)
aaCCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAAc > 2:631153/1‑100 (MQ=255)
aaCCCAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAAc < 2:986061/100‑1 (MQ=255)
cccAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGa > 2:1189559/1‑100 (MQ=255)
cccAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGa > 2:1191472/1‑100 (MQ=255)
ccAGCGTTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAt > 1:1684428/1‑100 (MQ=255)
gATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAtttttt > 2:4328/1‑100 (MQ=255)
aTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTta < 1:1637695/100‑1 (MQ=255)
|
ACGAGAAATCTCGTCTGAAAGTGTCTGTTTCTATCTTCGGTCGTGCGACCCCGGTAGAGCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTA > NC_000913/4178200‑4178395
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
