Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F56 I0 R1 312 170.3 8276235 93.7% 7754832 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,728,444 C→A 100% T33N (ACC→AAC)  rnt → RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,728,4440CA100.0% 315.3 / NA 93T33N (ACC→AAC) rntRNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (52/41);  total (52/41)

TCCGATAACGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAACCGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAACCATT  >  NC_000913/1728350‑1728540
                                                                                              |                                                                                                
tCCGATAACGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATg                                                                                             <  2:1965528/100‑1 (MQ=255)
tCCGATAACGCTCAACTTACCGGTCCGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATg                                                                                             >  2:3097012/1‑100 (MQ=255)
 ccGATAACGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATgc                                                                                            >  1:1583293/1‑100 (MQ=255)
 ccGATAACGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATgc                                                                                            >  2:3391769/1‑100 (MQ=255)
 ccGATAACGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATgc                                                                                            <  2:2911302/100‑1 (MQ=255)
 ccGATAACGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATgc                                                                                            >  2:427503/1‑100 (MQ=255)
  cGATAACGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGCTCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATgcg                                                                                           >  1:1763750/1‑100 (MQ=255)
   gATAACGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATgcgc                                                                                          >  1:2862726/1‑100 (MQ=255)
       aCGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCgctgct                                                                                      <  2:2944001/100‑1 (MQ=255)
        cGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCtt                                                                                     >  2:1917202/1‑100 (MQ=255)
           tCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTgag                                                                                  <  1:98631/100‑1 (MQ=255)
            cAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTgaga                                                                                 <  1:336607/100‑1 (MQ=255)
            cAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTgaga                                                                                 >  2:2855942/1‑100 (MQ=255)
              aCTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGAtt                                                                               >  1:3602841/1‑100 (MQ=255)
                ttACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTgc                                                                             >  2:2565658/1‑100 (MQ=255)
                ttACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTgc                                                                             >  2:3305250/1‑100 (MQ=255)
                 tACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTgcc                                                                            <  1:80444/100‑1 (MQ=255)
                  aCCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTgccg                                                                           <  1:3873571/100‑1 (MQ=255)
                   ccGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTgccgc                                                                          <  1:750064/100‑1 (MQ=255)
                     ggTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTgccgcc                                                                         >  2:2067672/1‑99 (MQ=255)
                     ggTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCa                                                                        >  1:851757/1‑100 (MQ=255)
                         tgggCGACCTTTTTCGTGGTTTTAATACTGTTGTGATCGATGTTTAAACTGCTGGAAAAAAAAAAAAAAACGATGCGCTGCTTGAGATTGCCGCCATc                                                                      <  2:3210169/95‑1 (MQ=255)
                          gtgCGACCGTTTTCGTGGTTTTTATCCTGTTTTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAAGGATGCGCTGCTTCAGATTGCCGCCATCAc                                                                    >  2:3569406/1‑99 (MQ=255)
                            gCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCt                                                                 >  1:3005529/1‑100 (MQ=255)
                             cGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTg                                                                <  1:3573002/100‑1 (MQ=255)
                             cGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTg                                                                >  1:3473782/1‑100 (MQ=255)
                              gACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGa                                                               <  1:3071360/100‑1 (MQ=255)
                                   ttttCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATg                                                          <  1:2855958/100‑1 (MQ=255)
                                     ttCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGa                                                        <  1:1565596/100‑1 (MQ=255)
                                     ttCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGa                                                        >  2:2739542/1‑100 (MQ=255)
                                       cGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATg                                                      >  1:2113068/1‑100 (MQ=255)
                                        gTGGTTTTTATGCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGa                                                     >  2:2166334/1‑100 (MQ=255)
                                        gTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGa                                                     >  2:2007024/1‑100 (MQ=255)
                                        gTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGa                                                     >  1:143292/1‑100 (MQ=255)
                                          ggTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAAc                                                   <  1:3230111/100‑1 (MQ=255)
                                          ggTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAAc                                                   >  1:3047252/1‑100 (MQ=255)
                                          ggTTTTGATCCTGTTGTGATCGATGTTGAAACCGCAGGATTTAACGACAAAGACGATGCACTGCTTGAGATTGCCGCCAGCAACCGGAAAATGGATGaag                                                   <  2:3901848/100‑2 (MQ=255)
                                           gTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACa                                                  >  1:213124/1‑100 (MQ=255)
                                           gTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACa                                                  <  1:3991316/100‑1 (MQ=255)
                                           gTTTTTATCCTGTTGTGATCAATGTTGAAACAGCCGGATTTAACACCAAAAAAGATGAACTGCTTGAAATTACCACCATCACCCTAAAAATGGATGAACa                                                  >  2:1728436/1‑100 (MQ=255)
                                           gTTTTTAACCTGTTGTGATCGACGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACa                                                  <  1:3670999/100‑1 (MQ=255)
                                            tttttATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACaa                                                 <  1:3344443/100‑1 (MQ=255)
                                              tttATCCTGTTGTGATCGATGTTGAAACAGCCGGAATTACCTGCAAAAAGGATCCGCGGCTTGAGATTGCCGCCCTCACCCTGaaaagcggtgaa                                                    >  2:741601/1‑87 (MQ=255)
                                                tATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAggct                                             <  1:269852/100‑1 (MQ=255)
                                                   ccTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAggctggc                                          >  2:3125007/1‑100 (MQ=255)
                                                    cTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAggctggct                                         <  1:3198065/100‑1 (MQ=255)
                                                    cTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAggctggct                                         >  2:2350575/1‑100 (MQ=255)
                                                    cTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAggctggct                                         >  1:852074/1‑100 (MQ=255)
                                                     tgttgtGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGgctggctg                                        <  2:2932711/100‑1 (MQ=255)
                                                     tgttgtGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGgctggctg                                        <  1:2418546/100‑1 (MQ=255)
                                                      gttgtGATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGa                                       >  1:1040185/1‑100 (MQ=255)
                                                        tgtgATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATg                                     >  1:542702/1‑100 (MQ=255)
                                                        tgtgATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATg                                     <  1:3250217/100‑1 (MQ=255)
                                                        tgtgATCGATGTTGAAACAGCCAGATTTAGCGCCAAAAACGATGCGCTGCTTGAAATTGCCGCCAACACCCTAAAAATGGATGAACAAGGCTGGCTGATg                                     <  2:3710702/100‑1 (MQ=255)
                                                          tgATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGcc                                   >  2:1048276/1‑100 (MQ=255)
                                                           gATCGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCg                                  >  1:1872496/1‑100 (MQ=255)
                                                              cGATGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGac                               >  1:1664300/1‑100 (MQ=255)
                                                                aTGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGacac                             <  1:3992403/100‑1 (MQ=255)
                                                                aTGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGacac                             <  2:3402032/100‑1 (MQ=255)
                                                                 tGTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGAcacc                            >  1:1244837/1‑100 (MQ=255)
                                                                  gTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGAcacca                           >  2:2580461/1‑100 (MQ=255)
                                                                  gTTGAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGAcacca                           >  2:40813/1‑100 (MQ=255)
                                                                     gAAACAGCCGGATTTAACGCCAAAAACTATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCacat                        <  2:1317850/100‑1 (MQ=255)
                                                                     gAAACAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCTTGAAAATGGAGGAACAAGGCTGGCTGATTCCGGAcaccactt                        <  1:2789390/100‑3 (MQ=255)
                                                                      aaaCAGCCGGATTTAACGCCAAAAACGATGTGCAGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGAACACCacatt                       >  2:2709564/1‑100 (MQ=255)
                                                                       aaCAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCacatta                      >  1:1640221/1‑100 (MQ=255)
                                                                        aCAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCacattac                     <  2:2311875/100‑1 (MQ=255)
                                                                         cAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCacattaca                    <  1:1744010/100‑1 (MQ=255)
                                                                         cAGCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCacattaca                    >  1:587089/1‑100 (MQ=255)
                                                                           gCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCacattacatt                  >  2:640955/1‑100 (MQ=255)
                                                                           gCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCacattacatt                  >  1:1125206/1‑100 (MQ=255)
                                                                           gCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCacattacatt                  >  1:2491944/1‑100 (MQ=255)
                                                                           gCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCacattacatt                  >  2:2684824/1‑100 (MQ=255)
                                                                           gCCGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCacattacatt                  >  1:3456690/1‑100 (MQ=255)
                                                                             cGGATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTc                <  1:3559819/100‑1 (MQ=255)
                                                                               gATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCa              <  2:2361000/100‑1 (MQ=255)
                                                                               gATTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGAATGAACAAGGCTGGCTGATGCCGGACACCacattacat                   <  2:2244060/95‑1 (MQ=255)
                                                                                aTTTAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCa              <  1:3228851/99‑1 (MQ=255)
                                                                                 tttAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACg            <  1:3593258/100‑1 (MQ=255)
                                                                                   tAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTc          <  1:3164850/100‑1 (MQ=255)
                                                                                   tAACGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTc          <  1:3805614/100‑1 (MQ=255)
                                                                                     aCGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGa        >  1:2627054/1‑100 (MQ=255)
                                                                                      cGCCAACAACGATACGCTGCTTAAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGATGGCTGATGCCGCACACCACATCACATTTCCCCGt           >  2:869531/1‑96 (MQ=255)
                                                                                      cGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGaa       >  1:2400657/1‑100 (MQ=255)
                                                                                      cGCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGaa       >  2:429353/1‑100 (MQ=255)
                                                                                       gCCAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAAc      <  2:1754116/100‑1 (MQ=255)
                                                                                       cccAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAAc      <  1:2730020/99‑1 (MQ=255)
                                                                                        ccAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAAcc     >  1:2553652/1‑100 (MQ=255)
                                                                                        ccAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAAcc     <  2:1872483/100‑1 (MQ=255)
                                                                                        ccAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAAcc     >  1:1886795/1‑100 (MQ=255)
                                                                                        ccAAAAACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCAACGTCGAAcc     >  2:1473128/1‑100 (MQ=255)
                                                                                          aaaaACGATGCGCTGCTTGATATTGCCGCCATCCCCCTGCAAATTGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAAcc     <  2:3472165/98‑1 (MQ=255)
                                                                                          aaaaACGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAACCAt   >  1:1856271/1‑100 (MQ=255)
                                                                                           aaaaCGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAACCAtt  >  1:1910380/1‑100 (MQ=255)
                                                                                              |                                                                                                
TCCGATAACGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAACCGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAACCATT  >  NC_000913/1728350‑1728540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A