Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I0 R1
|
312 |
170.3 |
8276235 |
93.7% |
7754832 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,118,566 |
C→T |
55.6% |
A183T (GCG→ACG) |
sslE ← |
putative secreted and surface‑associated lipoprotein mucinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,118,566 | 0 | C | T | 55.6%
| 38.5
/ 190.4
| 151 | A183T (GCG→ACG) | sslE | putative secreted and surface‑associated lipoprotein mucinase |
| Reads supporting (aligned to +/- strand): ref base C (25/42); new base T (38/46); total (63/88) |
| Fisher's exact test for biased strand distribution p-value = 4.06e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.94e-01 |
Only 100 of 153 total aligned reads displayed.
TGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACT > NC_000913/3118467‑3118663
|
tGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGc > 2:3208921/1‑100 (MQ=255)
aaCTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCg < 1:3850827/100‑1 (MQ=255)
aCTCTTCCTGTGCCAGATCGTTTTCTTTATACAGCGAGTTGAAGCGTTTACTCTCGATCATCGTGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCgg < 2:4117637/100‑1 (MQ=255)
aCTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCgg > 2:680126/1‑100 (MQ=255)
ctctTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGa > 1:1527807/1‑100 (MQ=255)
tctTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGAc < 2:3530628/100‑1 (MQ=255)
tctTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGAc < 1:1272237/100‑1 (MQ=255)
ctTCCGGTGCCAGATCTATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACa < 2:1300641/100‑1 (MQ=255)
ctTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACa < 1:3002906/100‑1 (MQ=255)
tCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGc > 1:829484/1‑100 (MQ=255)
ccGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTTTATTCGTCGGACAGCt > 2:101738/1‑100 (MQ=255)
cGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTg < 1:1324000/100‑1 (MQ=255)
gTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGtt < 1:217557/100‑1 (MQ=255)
tGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTGGCCGGACAGCTGTTa > 1:4064129/1‑100 (MQ=255)
gCCTGATCGAGTTGCTTATGCAGGGAGTGGAAGCGTTTGCTCTGGATCACCGGGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGtt < 2:3412358/98‑1 (MQ=255)
cAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTg < 2:2830743/100‑1 (MQ=255)
aGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTgg > 1:3853158/1‑100 (MQ=255)
aGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTgg < 2:2332513/100‑1 (MQ=255)
gATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGa > 2:411839/1‑100 (MQ=255)
gATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGa > 1:3172336/1‑100 (MQ=255)
tCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACg < 1:267093/100‑1 (MQ=255)
aTTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACCGCTCTTACTGGACGTTa > 2:1946209/1‑100 (MQ=255)
ttGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTAcc < 2:764828/100‑1 (MQ=255)
ttGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTAcc < 1:3095558/100‑1 (MQ=255)
tGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCa > 1:3796241/1‑100 (MQ=255)
gCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAg > 1:3732750/1‑100 (MQ=255)
gCTTATACAGCGAGTCGAAGCGTTTACGCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAg < 2:777080/100‑1 (MQ=255)
cTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGc > 2:1010671/1‑100 (MQ=255)
cTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGc < 1:1713267/100‑1 (MQ=255)
cTTATACAGCGAGTCGAAGCGTTTACACTCGATCACCGAGGAGAACGTCAGAAAAACCTGTTCTGTATTCGTCGGACAGCTGTCACTGTACGTTACCAg > 2:1494174/1‑99 (MQ=255)
tataCAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCg < 2:541343/99‑1 (MQ=255)
taCAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGaaa > 2:1736020/1‑100 (MQ=255)
aCAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAAc < 2:1639261/100‑1 (MQ=255)
cAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAAcc > 2:2609152/1‑100 (MQ=255)
cAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAAcc > 1:333180/1‑100 (MQ=255)
cAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGCCAGCTGTTACTGGACGTTACCAGCGAAAcc > 1:2627930/1‑100 (MQ=255)
cAGCGAGTCGAAGCGTTTACTCTCGATCAACGAGGCGAACGTCAGACAAACCTGTTCTGTATTCGCTGGACAGCTGTTACTGGACGTTACCAGCGAAAcc > 2:1868184/1‑100 (MQ=255)
aGCGAGTGGAAACGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCg > 2:2161719/1‑100 (MQ=255)
aGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAAcn < 2:3948001/99‑2 (MQ=255)
gCGAGTCGAAGTGTTTACTCTCGTTCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGc < 2:1362663/100‑1 (MQ=255)
cGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTGACTGGACGTTACCAGCGAAACCGCa < 2:205667/100‑1 (MQ=255)
gAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCAt > 1:4017109/1‑100 (MQ=255)
aGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCAtt > 1:15759/1‑100 (MQ=255)
gtcgaattttttACTCTCGATCACTGGGGAGAACGTCAGACAATCCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCAtt < 2:3166034/90‑1 (MQ=255)
gTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTg > 1:2216370/1‑100 (MQ=255)
gtagccgttgctctCCAGCACCGGGGAGAACGCGAGACAAACCTGTTCTGTATTCGTCGGACATCTGTTAGTGGACGGCACCAGCGAAACCGCATTGCtt < 2:3927568/90‑1 (MQ=255)
gAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCtt > 1:2448551/1‑100 (MQ=255)
aaGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCttt > 1:3130414/1‑100 (MQ=255)
attgTTTCCTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTTTATTGGTCGGACACCTGTTACTGGACTTTACCAGCGAAACCTCATTGCt < 2:2685079/94‑1 (MQ=255)
aGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCtttt < 2:2339089/100‑1 (MQ=255)
gTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCtt < 1:476802/100‑1 (MQ=255)
tttACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTg < 1:4091207/100‑1 (MQ=255)
tttACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTg < 2:586753/100‑1 (MQ=255)
tttACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTg < 1:3287786/100‑1 (MQ=255)
tACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTc < 2:835134/100‑1 (MQ=255)
ctctCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACCGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCAt > 2:2025222/1‑100 (MQ=255)
tctcGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATc < 2:1983049/100‑1 (MQ=255)
ctcGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATc > 1:1017767/1‑99 (MQ=255)
tcGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCgg < 2:4093355/100‑1 (MQ=255)
tcGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCgg < 1:3702270/100‑1 (MQ=255)
tcGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCgg < 2:3869111/100‑1 (MQ=255)
cGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGa > 2:3921091/1‑100 (MQ=255)
gATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAg < 2:2980131/100‑1 (MQ=255)
gATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAg < 1:2398053/100‑1 (MQ=255)
gATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAg > 1:2463995/1‑100 (MQ=255)
gATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAg < 1:680132/100‑1 (MQ=255)
gATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAg < 1:3483601/100‑1 (MQ=255)
gATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAg < 1:3156313/100‑1 (MQ=255)
aTCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGc > 2:2568147/1‑100 (MQ=255)
aCCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCg > 2:1785210/1‑100 (MQ=255)
aCCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCg > 2:610341/1‑100 (MQ=255)
aCCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCg < 1:353815/100‑1 (MQ=255)
cGAGGAGAACGTCAGACAAATCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGcgcccgcc < 2:2139200/100‑1 (MQ=255)
cGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGcc < 1:1036440/100‑1 (MQ=255)
cGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGcc < 1:3012731/100‑1 (MQ=255)
gaggagAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCa > 2:2116440/1‑100 (MQ=255)
aggagAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAg < 2:514360/100‑1 (MQ=255)
ggagAACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGt < 1:189526/100‑1 (MQ=255)
gaACGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCCGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCt > 2:2545521/1‑100 (MQ=255)
cGTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTgc < 2:1843405/100‑1 (MQ=255)
cGTCAGACAAACCTGTTCGGTCTTCGCCGGACAGATCTCACTGGTCGTCACCAACGAAACCGCATTGCTTTTCCTGTCATCCGACCCCGCCAGTTCttcc < 2:3419882/100‑3 (MQ=255)
gTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTgcg < 1:1999775/100‑1 (MQ=255)
gTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTgcg < 1:2127903/100‑1 (MQ=255)
gTCAGACAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTgcg < 1:1231102/100‑1 (MQ=255)
gTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGACCCCGCCAGTTCTTgcg < 2:1216947/100‑1 (MQ=255)
ataaaCCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTcc < 2:2508475/98‑1 (MQ=255)
aCAAACTTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCACCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTcc < 2:66642/100‑1 (MQ=255)
aCAAACCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTcc < 1:1877293/100‑1 (MQ=255)
aCAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTcc < 1:637900/100‑1 (MQ=255)
aaaCCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTc < 1:791543/100‑1 (MQ=255)
aaCCTGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCa < 2:1625307/100‑1 (MQ=255)
aCCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCaa > 1:1842506/1‑100 (MQ=255)
ccgTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAgg < 2:367287/98‑1 (MQ=255)
tGTTCTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGc < 1:2255842/100‑1 (MQ=255)
cTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCACGGCTaaa > 2:2762295/1‑100 (MQ=255)
cTGTATTCGTCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTaaa > 2:1265312/1‑100 (MQ=255)
gTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCTGCCAGTTCTTGCGCGTCTTCAAGGCTAAACg < 1:2782158/100‑1 (MQ=255)
gTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACg > 1:2026927/1‑100 (MQ=255)
gTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACg < 1:120311/100‑1 (MQ=255)
tcgtcgGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGacac > 1:2555392/1‑100 (MQ=255)
|
TGAACTCTTCCGGTGCCAGATCGATTTGCTTATACAGCGAGTCGAAGCGTTTACTCTCGATCACCGAGGAGAACGTCAGACAAACCTGTTCTGTATTCGCCGGACAGCTGTTACTGGACGTTACCAGCGAAACCGCATTGCTTTTCTTGTCATCGGAGCCCGCCAGTTCTTGCGCGTCCTCAAGGCTAAACGACACT > NC_000913/3118467‑3118663
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
