Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F142 I0 R1 175 91.2 4812830 94.5% 4548124 99.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,810,756 G→A 100% intergenic (+77/‑14) ygaH → / → mprA putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,810,7560GA100.0% 324.7 / ‑6.7 96intergenic (+77/‑14)ygaH/mprAputative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (48/47);  minor base T (1/0);  total (49/47)

AAGTGATGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCC  >  NC_000913/2810660‑2810851
                                                                                                |                                                                                               
aaGTGATGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAgg                                                                                              <  1:1695816/100‑1 (MQ=255)
   tGATGGCGATTATATAACCCACAAGAATTATTTTTCTAAAACAATACATTTACTTTATTTGTCATTGTCGTTACTATATTGGTTGAAATTAATAAGGTCa                                                                                           <  2:2044474/100‑1 (MQ=255)
   tGATGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCa                                                                                           <  1:1052178/100‑1 (MQ=255)
   tGATGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCa                                                                                           >  2:265910/1‑100 (MQ=255)
   tGATGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCa                                                                                           <  1:1372494/100‑1 (MQ=255)
   tGATGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCa                                                                                           >  1:240077/1‑100 (MQ=255)
   tGATGGCGATTATATAACACACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTc                                                                                            <  2:375922/99‑1 (MQ=255)
     tcttccgatctataACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATa                                                                                         <  1:1057193/90‑1 (MQ=255)
     aTGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATa                                                                                         >  1:885644/1‑100 (MQ=255)
     aTGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATa                                                                                         <  1:263795/100‑1 (MQ=255)
     aTGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACACTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATa                                                                                         >  2:1330315/1‑100 (MQ=255)
      tGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATAc                                                                                        >  2:1703442/1‑100 (MQ=255)
         cGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCa                                                                                     >  1:1991263/1‑100 (MQ=255)
         cGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCa                                                                                     >  1:2279807/1‑100 (MQ=255)
             tatataACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATg                                                                                 <  1:462119/100‑1 (MQ=255)
              atataACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATgg                                                                                >  1:401329/1‑100 (MQ=255)
               tataACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGa                                                                               >  2:154864/1‑100 (MQ=255)
                 taACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTGATAAAGTCATACCCAAATGGATa                                                                             >  2:623957/1‑100 (MQ=255)
                 taACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATa                                                                             >  2:515233/1‑100 (MQ=255)
                  aaCCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAg                                                                            >  2:52452/1‑100 (MQ=255)
                  aaCCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAg                                                                            <  1:1101966/100‑1 (MQ=255)
                  aaCCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAg                                                                            <  2:2021664/100‑1 (MQ=255)
                   aCCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGt                                                                           >  2:2372873/1‑100 (MQ=255)
                    cccACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGtt                                                                          >  2:2350980/1‑100 (MQ=255)
                      cacaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCTTCTGAATTTAATAAGTTCATACCCAAATGGATAGTTc                                                                         >  1:1553169/1‑99 (MQ=255)
                      cacaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCg                                                                        <  2:487153/100‑1 (MQ=255)
                      cacaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCg                                                                        <  2:160579/100‑1 (MQ=255)
                       acaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCg                                                                        <  1:684733/99‑1 (MQ=255)
                        caAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGtt                                                                      >  2:1835881/1‑100 (MQ=255)
                        caAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGtt                                                                      >  2:504790/1‑100 (MQ=255)
                        caAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGtt                                                                      <  2:828147/100‑1 (MQ=255)
                          aGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGCCATACCCAAATGGATAGTTCGTTTa                                                                    <  1:471757/100‑1 (MQ=255)
                            aaTCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACg                                                                  <  1:1548614/100‑1 (MQ=255)
                              tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGcc                                                                <  1:509705/100‑1 (MQ=255)
                              tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGcc                                                                <  2:913360/100‑1 (MQ=255)
                               cATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTTAGccc                                                               >  2:1910934/1‑100 (MQ=255)
                               cATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGc                                                                 >  2:2126402/1‑98 (MQ=255)
                               cATTTTTCTAAAACAATACATTTAATTTAATTGTCAATGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTAc                                                                   >  2:1048067/1‑96 (MQ=255)
                                  ttttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAtt                                                            <  1:1908271/100‑1 (MQ=255)
                                   tttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGTCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTg                                                           <  1:1163199/100‑1 (MQ=255)
                                   tttCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTg                                                           <  2:1164437/100‑1 (MQ=255)
                                      cTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGATCATACCCAAATGGATAGTTCGTTTACGCCCATTGAAc                                                        <  1:693856/100‑1 (MQ=255)
                                      cTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAAc                                                        >  2:2366872/1‑100 (MQ=255)
                                       tAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa                                                       >  2:119202/1‑100 (MQ=255)
                                       tAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa                                                       <  1:82482/100‑1 (MQ=255)
                                        aaaaCAATACATTTACTTTATTTGTCAGTGTCGTTACTATATCGGCTGAAATTAATTAAGTCATACCCACATGGCTAGTTCGTTTACACCCATTGAAc                                                        >  2:904573/1‑98 (MQ=255)
                                          aaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAAt                                                    <  2:679297/100‑1 (MQ=255)
                                          aaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAAt                                                    <  1:1142773/100‑1 (MQ=255)
                                          aaCAATACATTTACTTTATTTGTCACTGTAGTTACTATATCGGCTAAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAAt                                                    <  2:1303505/100‑1 (MQ=255)
                                            cAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGc                                                  >  2:1414674/1‑100 (MQ=255)
                                            cAATACATTTACTTTATTTGTCACTGTCGTTACTATACCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGc                                                  <  1:373735/100‑1 (MQ=255)
                                               tACATTTAATTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTaa                                               <  1:407973/100‑1 (MQ=255)
                                                aCATATATTTTATTTGTCACTGTCGTTGATATATCGAATGAAATTAATAAAGTCATACCCAAATGGATAGTTCTTTTACGCCTATTGAACaaagagtaaa                                              <  2:78948/100‑8 (MQ=255)
                                                 cATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTaaaa                                             >  2:1194216/1‑100 (MQ=255)
                                                 cATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTaaaa                                             >  1:927863/1‑100 (MQ=255)
                                                  aTTTACTTTATTTGTCACTGTCGTTGCTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAt                                            >  1:578980/1‑100 (MQ=255)
                                                  aTTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAt                                            >  1:622376/1‑100 (MQ=255)
                                                  aTTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAt                                            >  2:611498/1‑100 (MQ=255)
                                                     tACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAACTGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAtt                                           >  2:1683869/1‑98 (MQ=255)
                                                     tACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAACTGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTc                                         >  2:1683850/1‑100 (MQ=255)
                                                      aCTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTcg                                        >  1:566346/1‑100 (MQ=255)
                                                      aCTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTcg                                        <  2:1695540/100‑1 (MQ=255)
                                                       cTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTcgc                                       <  2:974526/100‑1 (MQ=255)
                                                       cTTTATTTGTCACTGTCGTTACTATACCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTcgc                                       <  2:1930511/100‑1 (MQ=255)
                                                        tttATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTcgcg                                      <  2:2128121/100‑1 (MQ=255)
                                                        tttATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTcgcg                                      <  2:1383788/100‑1 (MQ=255)
                                                         ttATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCgcgc                                     <  2:410595/100‑1 (MQ=255)
                                                          tATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAGGCCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGcc                                    <  1:1544806/100‑1 (MQ=255)
                                                          tATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGcc                                    >  1:495525/1‑100 (MQ=255)
                                                           aTTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCa                                   >  1:690458/1‑100 (MQ=255)
                                                           aTTTGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCa                                   >  2:629966/1‑100 (MQ=255)
                                                            tttGTCACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAg                                  >  2:995230/1‑100 (MQ=255)
                                                              tGTCACTGTTGTTAATATAAAGGATGTAATGAATAAAGTAATAACCAAATGGATAGTTCGATTACGAACAATGAATAAATGTTAAAATTTcgcacga                                   >  2:1567038/1‑93 (MQ=255)
                                                                 cACTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAgccgcc                             >  1:2177865/1‑100 (MQ=255)
                                                                  aCTGTCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCa                            >  2:660606/1‑100 (MQ=255)
                                                                      tCGTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGaa                        <  2:1270283/100‑1 (MQ=255)
                                                                        gTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGa                      <  1:569983/100‑1 (MQ=255)
                                                                        gTTACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGa                      >  2:208267/1‑100 (MQ=255)
                                                                         ttACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGAt                     <  2:1602138/100‑1 (MQ=255)
                                                                          tACTATATCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGAtt                    >  2:1943703/1‑100 (MQ=255)
                                                                          tACTATATCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGAtt                    >  2:1826026/1‑100 (MQ=255)
                                                                              atatCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTCTcc                >  1:2102825/1‑100 (MQ=255)
                                                                              atatCGGCTGAAATTAATAAAGTCATACCCAAATTGATAGTTCGTTTACGCCCATTGATCAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTcc                <  2:1498437/100‑1 (MQ=255)
                                                                              atatCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGTACAAATGCTACAATTTCGCGCCAGCCGCTACGAAGAtttttc                <  1:1616701/100‑3 (MQ=255)
                                                                              atatCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTcc                >  2:287134/1‑100 (MQ=255)
                                                                               tatCGGCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCt               <  1:2351008/100‑1 (MQ=255)
                                                                               tatCGGCTGAAATTAATAAGGCCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCt               <  1:263114/100‑1 (MQ=255)
                                                                               tatCGGCTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCt               >  1:2199043/1‑100 (MQ=255)
                                                                                atCGGCTGAAATTAATAAGGCCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCtt              >  2:238848/1‑100 (MQ=255)
                                                                                   ggCTGAAATTAATAAGGCCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATc           >  2:2218247/1‑100 (MQ=255)
                                                                                    gCTGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCa          <  2:2340448/100‑1 (MQ=255)
                                                                                     cTGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAg         <  2:70614/100‑1 (MQ=255)
                                                                                      tGAAATTAATAAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAgg        >  1:2311796/1‑100 (MQ=255)
                                                                                      tGAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAgg        <  2:924525/100‑1 (MQ=255)
                                                                                       gAAATTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGga       >  1:1400516/1‑100 (MQ=255)
                                                                                        aaaTTAATAAAGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGga       <  2:2168342/99‑1 (MQ=255)
                                                                                            taataaAGTCATACCCAAATGGATAGTTCGTTTACGCACATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTACTTATCAGGAGATcc  >  2:989447/1‑100 (MQ=255)
                                                                                                |                                                                                               
AAGTGATGGCGATTATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATTTTCCTTATCAGGAGATCC  >  NC_000913/2810660‑2810851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A