Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F133 I1 R1 102 83.9 4092546 96.1% 3932936 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,410,649 A→G I124V (ATC→GTC)  dusB → tRNA‑dihydrouridine synthase B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,410,6490AG98.8% 290.1 / ‑4.7 82I124V (ATC→GTC) dusBtRNA‑dihydrouridine synthase B
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (45/36);  total (46/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01

CCAGATTATTGATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGATCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAAGAGATTGCCC  >  NC_000913/3410552‑3410745
                                                                                                 |                                                                                                
ccAGATTATTGATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTc                                                                                                <  1:293135/100‑1 (MQ=255)
ccAGATTATTGATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTc                                                                                                <  2:256649/100‑1 (MQ=255)
ccAGATTATTGATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCATCTTGCAGTACCCGGATGTCGTTAAATCGGTc                                                                                                >  2:1754670/1‑100 (MQ=255)
 cAGATTATTGATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTcc                                                                                               <  2:373186/100‑1 (MQ=255)
       attGATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCg                                                                                         <  1:535166/100‑1 (MQ=255)
        ttGATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGa                                                                                        <  1:1321349/100‑1 (MQ=255)
        ttGATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGa                                                                                        <  2:1874766/100‑1 (MQ=255)
          gATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAgg                                                                                      >  1:913955/1‑100 (MQ=255)
          gATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAgg                                                                                      >  1:1983216/1‑100 (MQ=255)
               cAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGgtcgtc                                                                                 >  1:1040651/1‑100 (MQ=255)
               cAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGgtcgtc                                                                                 <  2:1216009/100‑1 (MQ=255)
                  tatGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCGCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAAt                                                                              <  2:1946405/100‑1 (MQ=255)
                    tGGGTTTCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGc                                                                            >  2:705724/1‑100 (MQ=255)
                    tGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGc                                                                            >  2:1823021/1‑100 (MQ=255)
                     gggTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCa                                                                           >  1:773775/1‑100 (MQ=255)
                     gggTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGATCCTTACCGAGGTCGTCAATGCa                                                                           >  2:439602/1‑100 (MQ=255)
                         tGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTgg                                                                       >  2:829977/1‑100 (MQ=255)
                              ggCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGtt                                                                  >  1:146551/1‑100 (MQ=255)
                                   gatctgTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGACCCTACCGAGGTCGTCAATGCAGTGGACGTTCCTGt                                                             <  2:1337549/95‑1 (MQ=255)
                                   aaaaaGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGt                                                             <  1:1823037/100‑1 (MQ=255)
                                   aaaaaGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGt                                                             <  1:582109/100‑1 (MQ=255)
                                   aaaaaGGGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTg                                                              >  1:1706112/1‑99 (MQ=255)
                                    aaaaGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGtt                                                            >  2:1296211/1‑100 (MQ=255)
                                    aaaaGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGtt                                                            >  1:382415/1‑100 (MQ=255)
                                        gTGAATCGCAAGGTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGACCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGtagatc                                                        >  1:1337558/1‑95 (MQ=255)
                                        gTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTAccc                                                        >  2:818427/1‑100 (MQ=255)
                                        gTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTAccc                                                        <  2:145210/100‑1 (MQ=255)
                                        gTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTAccc                                                        >  1:516943/1‑100 (MQ=255)
                                        gTGAATCGCAAGCTCGCAGGTTCAGCCCTCTCGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTAccc                                                        <  1:409396/100‑1 (MQ=255)
                                         tGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCt                                                       >  2:1531689/1‑100 (MQ=255)
                                           aaTCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTg                                                      <  2:82971/99‑1 (MQ=255)
                                            aTCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGaa                                                    >  2:645294/1‑100 (MQ=255)
                                            aTCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGaa                                                    >  1:1258579/1‑100 (MQ=255)
                                            aTCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGaa                                                    <  1:1737035/100‑1 (MQ=255)
                                             tCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAg                                                   <  1:1754684/100‑1 (MQ=255)
                                               gCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGAt                                                 >  1:6077/1‑100 (MQ=255)
                                                cAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGAtt                                                >  1:455906/1‑100 (MQ=255)
                                                  aGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCg                                              <  1:576789/100‑1 (MQ=255)
                                                  aGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCg                                              <  2:883369/100‑1 (MQ=255)
                                                    cTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCa                                            >  2:424562/1‑100 (MQ=255)
                                                    cTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCa                                            >  1:661982/1‑100 (MQ=255)
                                                      cGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCAcc                                          <  1:1852611/100‑1 (MQ=255)
                                                          ggTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCt                                      >  2:844127/1‑100 (MQ=255)
                                                          ggTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCt                                      >  1:283072/1‑100 (MQ=255)
                                                          ggTTCAGCACTCTTGCAGTACCCGGATGTCGCTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCt                                      >  1:79676/1‑100 (MQ=255)
                                                           gTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTg                                     <  1:415378/100‑1 (MQ=255)
                                                            ttCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTgg                                    <  2:89713/100‑1 (MQ=255)
                                                             tCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTggg                                   <  2:702505/100‑1 (MQ=255)
                                                               aGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCa                                 <  2:761022/100‑1 (MQ=255)
                                                               aGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCa                                 <  2:441893/100‑1 (MQ=255)
                                                               aGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCa                                 >  1:299942/1‑100 (MQ=255)
                                                                 cccTCTTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCGcc                               >  2:1915196/1‑100 (MQ=255)
                                                                   ctctTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCgg                             <  2:382414/100‑1 (MQ=255)
                                                                   ctctTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCgg                             <  2:1040646/100‑1 (MQ=255)
                                                                    tctTGCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGa                            >  2:438805/1‑100 (MQ=255)
                                                                        gCAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAacac                        >  2:197094/1‑100 (MQ=255)
                                                                         cAGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACAcc                       >  1:1667098/1‑100 (MQ=255)
                                                                          aGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCg                      <  1:524587/100‑1 (MQ=255)
                                                                          aGTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCg                      <  1:770252/100‑1 (MQ=255)
                                                                           gTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGt                     >  2:560607/1‑100 (MQ=255)
                                                                           gTACCCGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGt                     <  1:844130/100‑1 (MQ=255)
                                                                              cccGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAAc                  >  1:560005/1‑100 (MQ=255)
                                                                              cccGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAAc                  >  1:776303/1‑100 (MQ=255)
                                                                                cGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTg                <  2:471870/100‑1 (MQ=255)
                                                                                cGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTg                <  2:913951/100‑1 (MQ=255)
                                                                                cGGATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTg                >  1:134992/1‑100 (MQ=255)
                                                                                  gATGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCg              <  2:1882277/100‑1 (MQ=255)
                                                                                   aTGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGa             <  1:1531698/100‑1 (MQ=255)
                                                                                    tGTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGaa            >  2:486958/1‑100 (MQ=255)
                                                                                     gTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAag           >  1:1160642/1‑100 (MQ=255)
                                                                                     gTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAag           <  2:141496/100‑1 (MQ=255)
                                                                                     gTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAag           >  1:1288279/1‑100 (MQ=255)
                                                                                     gTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAag           <  2:1338476/100‑1 (MQ=255)
                                                                                     gTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAag           <  1:1914994/100‑1 (MQ=255)
                                                                                     gTCGTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAag           >  1:1461036/1‑100 (MQ=255)
                                                                                       cGTTAAACCGGCCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCATCGGCTGGGCACCGGAACACCGTAACTGCGAagag         >  2:1074295/1‑100 (MQ=255)
                                                                                        gTTAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAAgaga        >  2:321961/1‑100 (MQ=255)
                                                                                          tAAATCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGACGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAAGAGAtt      >  2:1888598/1‑100 (MQ=255)
                                                                                           aaaTCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAAGAGATTg     >  2:736533/1‑100 (MQ=255)
                                                                                              tCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAAGAGATTGccc  >  2:1347602/1‑100 (MQ=255)
                                                                                              tCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAAGAGATTGccc  >  2:1382452/1‑100 (MQ=255)
                                                                                              tCGGTCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAAGAGATTGccc  >  2:2018323/1‑100 (MQ=255)
                                                                                                 |                                                                                                
CCAGATTATTGATATCAATATGGGTTGCCCGGCTAAAAAAGTGAATCGCAAGCTCGCAGGTTCAGCCCTCTTGCAGTACCCGGATGTCGTTAAATCGATCCTTACCGAGGTCGTCAATGCAGTGGACGTTCCTGTTACCCTGAAGATTCGCACCGGCTGGGCACCGGAACACCGTAACTGCGAAGAGATTGCCC  >  NC_000913/3410552‑3410745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A