Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F133 I0 R1
|
200 |
171.4 |
8351354 |
94.3% |
7875326 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,841,079 |
C→A |
73.2% |
A109S (GCG→TCG) |
ynjF ← |
CDP‑alcohol phosphatidyltransferase family inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,841,079 | 0 | C | A | 73.2%
| 255.6
/ 116.8
| 148 | A109S (GCG→TCG) | ynjF | CDP‑alcohol phosphatidyltransferase family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (21/19); new base A (60/48); total (81/67) |
| Fisher's exact test for biased strand distribution p-value = 8.53e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 149 total aligned reads displayed.
GGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAG > NC_000913/1840982‑1841175
|
gggTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAAt < 1:2195125/100‑1 (MQ=255)
ggTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCAtt < 2:835909/100‑1 (MQ=255)
ggTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCAtt > 1:1235287/1‑100 (MQ=255)
ggTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGGGCCGATAAACACGAACAACAACCAGCCGCCTGACAGCCCAt > 2:1192278/1‑99 (MQ=255)
gTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGGCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCAttt > 1:362816/1‑100 (MQ=255)
gTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAAttt > 1:942506/1‑100 (MQ=255)
tgaTCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAAtttt < 2:2524457/98‑1 (MQ=255)
tATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTg > 1:2494279/1‑100 (MQ=255)
tCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCt > 1:2709109/1‑100 (MQ=255)
aaTCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTcc < 1:3062267/100‑1 (MQ=255)
aaTCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTcc < 2:2756432/100‑1 (MQ=255)
aaTCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTcc > 2:4175102/1‑100 (MQ=255)
aaTCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTcc > 1:2482269/1‑100 (MQ=255)
tCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCgg < 2:4037894/100‑1 (MQ=255)
tCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCAGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCgg > 1:1975103/1‑100 (MQ=255)
tGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTg < 1:2248052/100‑1 (MQ=255)
gATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTgc > 2:1151856/1‑100 (MQ=255)
gATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTgc < 2:2290887/100‑1 (MQ=255)
aTGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTgca < 1:3354238/100‑1 (MQ=255)
tGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTgcag > 1:1136114/1‑100 (MQ=255)
gTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTgcagc < 1:919147/100‑1 (MQ=255)
gTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTgcagc > 1:3173033/1‑100 (MQ=255)
ttGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAg < 1:298557/100‑1 (MQ=255)
ttGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAg > 2:3595838/1‑100 (MQ=255)
gctgcCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAACAAGaa > 2:2997573/1‑100 (MQ=255)
tgcCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCCACAGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATa > 2:3949464/1‑100 (MQ=255)
gcCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATaa > 1:236770/1‑100 (MQ=255)
gcCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATaa > 1:1835006/1‑100 (MQ=255)
cAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAg < 1:799599/100‑1 (MQ=255)
cAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAg > 1:1298195/1‑100 (MQ=255)
cAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAg < 1:1126410/100‑1 (MQ=255)
aGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGc < 1:4075762/100‑1 (MQ=255)
cagcaAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGTTCCTTTTCTGCAAGAATAAACCCaaa > 2:492535/1‑100 (MQ=255)
cagcaAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCaaa > 2:1458975/1‑100 (MQ=255)
agcaAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAAc > 1:841299/1‑100 (MQ=255)
gcaAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACg > 1:522679/1‑100 (MQ=255)
aaaGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGc < 1:3614550/100‑1 (MQ=255)
aaaGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGc > 2:3619043/1‑100 (MQ=255)
aaGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCa > 1:1733459/1‑100 (MQ=255)
cGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAg > 1:4003153/1‑100 (MQ=255)
agaAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAgcg < 1:2364746/100‑1 (MQ=255)
gaAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAgcgc > 1:3779888/1‑100 (MQ=255)
gaAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGATCCGGTGCAGCAAGAATAAAACCAAACAGCACCAgcgc > 2:3648801/1‑100 (MQ=255)
aaCTGCTGCCCGTGCCGATAAACGCAAACAACAACCGGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTa < 2:940473/100‑1 (MQ=255)
ctgctgCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTaaa < 1:3336604/100‑1 (MQ=255)
ctgcCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAaga < 1:2974151/100‑1 (MQ=255)
tgcCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAagag > 2:1220106/1‑100 (MQ=255)
tgcCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAagag < 1:3747396/100‑1 (MQ=255)
cccGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGaa > 1:2527474/1‑100 (MQ=255)
cGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGaaaa > 1:92404/1‑100 (MQ=255)
cGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGaaaa > 1:1218576/1‑100 (MQ=255)
cGTGCCGATAAACGCAAACAAAAAACAACCGCATACCAGAGAATTTTGCACCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGAGTAAAAAAGaaaa > 2:1123608/1‑100 (MQ=255)
tGCCGATAAACGCAAACGACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATc < 1:2562014/100‑1 (MQ=255)
tGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATc > 2:2060307/1‑100 (MQ=255)
ccGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCga > 1:999425/1‑100 (MQ=255)
ccGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCga > 1:1530600/1‑100 (MQ=255)
cGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCgag < 1:1075633/100‑1 (MQ=255)
cGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCgag < 1:2060317/100‑1 (MQ=255)
gATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCgaga < 1:3106659/100‑1 (MQ=255)
gATAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATATTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCgaga > 2:2561044/1‑100 (MQ=255)
aTAAACGCAAACAACAACCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCgagag < 2:236768/100‑1 (MQ=255)
aaaCGGAAACAATAACCGGCTGTTTGTCAGTGAATTTTGCTGCGGTGCAGCAAGAATAAAGCCAAACGGTACCAGTGTGTAAAAGAGAAAATCgagag < 2:2021606/98‑1 (MQ=255)
gcgaacagcaacCAGCCGCCTGCTAGCGAATGCTGCTCCGGTGTAACAAGAATAAAGCCAAACGGCACCAGCTCGTAAAAGAGAAAATCGATAGAAat < 2:1030291/95‑1 (MQ=255)
gCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAatat < 1:1220111/100‑1 (MQ=255)
cAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATc > 1:2249731/1‑100 (MQ=255)
aacgaaaacCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCaa < 2:1160197/94‑1 (MQ=255)
aacaacaacCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAAACGAGAGAAATATCaa > 1:4070881/1‑100 (MQ=255)
acaacaacCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAGACGGCGCCAGCGCGTAAAAGAGAAAATCCAGCGAAATATc > 2:2481696/1‑97 (MQ=255)
caacaacCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGa > 1:1527858/1‑100 (MQ=255)
caacaacCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGa > 1:3255896/1‑100 (MQ=255)
aacaacCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGaa > 1:2931358/1‑100 (MQ=255)
acaacCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCaaagat > 1:1987251/1‑96 (MQ=255)
caacCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAg > 2:533245/1‑100 (MQ=255)
caacCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAg < 2:1717919/100‑1 (MQ=255)
caacCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAg > 1:3180035/1‑100 (MQ=255)
aacCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAgc < 2:221511/100‑1 (MQ=255)
aacCAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAgc < 2:135324/100‑1 (MQ=255)
ccAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAgccg > 1:4084403/1‑100 (MQ=255)
cAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAgccgc < 1:3830938/100‑1 (MQ=255)
cAGCCGCCTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAgccgc < 1:3814025/100‑1 (MQ=255)
aGCCGCCTGCCAGCGAATGTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAgccgcc < 2:2625276/100‑1 (MQ=255)
ggcgccTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGGACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAgccgc < 2:3528459/96‑1 (MQ=255)
ccgccTGCCACCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGGGATAATCGAGAGAAATATCAAGAAAGccgcccg < 2:2739626/100‑1 (MQ=255)
cgccTGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGccgcccgc > 1:2712736/1‑100 (MQ=255)
tGCCAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCg < 1:1601374/100‑1 (MQ=255)
gCCAACGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCgg < 2:2019714/100‑1 (MQ=255)
ccAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGt > 2:1504424/1‑100 (MQ=255)
ccAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGt > 2:2966280/1‑100 (MQ=255)
ccAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGt > 1:3491438/1‑100 (MQ=255)
ccAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGt > 2:1871559/1‑100 (MQ=255)
cAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGt < 2:4070850/99‑1 (MQ=255)
cAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTa > 2:2172364/1‑100 (MQ=255)
cAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTa < 1:1328346/100‑1 (MQ=255)
cAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTa > 2:2108039/1‑100 (MQ=255)
cAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTa > 1:1163927/1‑100 (MQ=255)
cAGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATAGCAAGAAAGCCGCCCGCGTCgg < 1:2874729/98‑1 (MQ=255)
aGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTaa < 1:651532/100‑1 (MQ=255)
aGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTaa > 2:128986/1‑100 (MQ=255)
aGCGAATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTaa > 1:3234744/1‑100 (MQ=255)
gcgaATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAg < 1:1871569/100‑1 (MQ=255)
|
GGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAGGCGAGAAAACTGCTGCCCGTGCCGATAAACGCAAACAACAACCAGCCGCCTGCCAGCGCATTTTGCTCCGGTGCAGCAAGAATAAAGCCAAACGGCACCAGCGCGTAAAAGAGAAAATCGAGAGAAATATCAAGAAAGCCGCCCGCGTCGGTAAG > NC_000913/1840982‑1841175
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
