Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F133 I0 R1 200 171.4 8351354 94.3% 7875326 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,360,916 (A)6→5 100% intergenic (+300/‑260) gltD → / → gltF glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,360,9110A.76.1% 480.9 / 233.0 218intergenic (+295/‑265)gltD/gltFglutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein
Reads supporting (aligned to +/- strand):  ref base A (24/28);  new base . (88/78);  total (112/106)
Fisher's exact test for biased strand distribution p-value = 4.29e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 245 total aligned reads displayed.

ATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAACCACCTCACCA  >  NC_000913/3360812‑3361009
                                                                                                   |                                                                                                  
aTTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAAtata                                                                                                    >  2:1414108/1‑100 (MQ=255)
aTTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAAtata                                                                                                    <  1:2087517/100‑1 (MQ=255)
  tACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATaaa                                                                                                  <  1:2516540/100‑1 (MQ=255)
  tACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATaaa                                                                                                  >  1:687929/1‑100 (MQ=255)
      tGTTATCACATCTCACAATACCCATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTATCGATATTAATATACCAAATATGAATATaaaaacc                                                                                              <  2:1649181/100‑3 (MQ=255)
      tGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATaaaaacc                                                                                              >  1:2586930/1‑98 (MQ=255)
       gTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATaaaaacca                                                                                             >  1:2897069/1‑97 (MQ=255)
        ttAACACCTCTGACAATACCGATTCTGCAAGATAATCAGTCTTTTCATTCAATGTAAATCATAACAATAATAATATAAAAAATATAAATATAAAAAACCa                                                                                            >  1:2427293/1‑100 (MQ=255)
         tAACACCTCTGACACTACCGATTCTGCACGCTATTCAGTCCTTTCTTTCCATGTAAATAGTCTCGATATTAATATACAAAATTTAAATATaaaaagcaat                                                                                           >  2:1391303/1‑95 (MQ=255)
         tAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATaaaaaccatt                                                                                           <  1:2826100/100‑6 (MQ=255)
         tAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAat                                                                                          >  2:1090537/1‑100 (MQ=255)
         tAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAat                                                                                          >  2:1317666/1‑100 (MQ=255)
         tAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAat                                                                                          >  2:1503002/1‑100 (MQ=255)
          aaCACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAata                                                                                         <  1:3202256/100‑1 (MQ=255)
              ccTATGAAAATAGCGAATCTGCCAGCGACTGAGTCTTTACAGACCATGAAAATTGGCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATAtatt                                                                                     <  2:3858715/100‑1 (MQ=255)
               ctctGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATAtatta                                                                                    >  2:3296462/1‑100 (MQ=255)
                tctGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTACTATACAAAATATGAATAT‑AAAAACCAATAtatta                                                                                    >  2:3968912/1‑99 (MQ=255)
                tctGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATAtattat                                                                                   <  2:434069/100‑1 (MQ=255)
                tctGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATAtattat                                                                                   >  2:1636399/1‑100 (MQ=255)
                 ctGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATAtattat                                                                                   >  2:851578/1‑100 (MQ=255)
                 ctGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATc                                                                                  <  2:2261659/100‑1 (MQ=255)
                  tGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATcc                                                                                 <  2:2304596/100‑1 (MQ=255)
                      aaTATCGATTCTGCAATCTATTCAGTTTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAA‑AAAAAAAAAAAAAACCAATATATTATCCTTaa                                                                             <  2:915617/100‑1 (MQ=255)
                       aTACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTaa                                                                             >  1:3911609/1‑100 (MQ=255)
                        tACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAAtt                                                                           >  1:398015/1‑100 (MQ=255)
                           cGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATc                                                                        <  1:3342935/100‑1 (MQ=255)
                            gATTCTGCATGCTATCCAGTCTTTTCATTCCATGTAAATGGTCTCGATATTAATATACACACTATAAATAT‑AAAAACCAATAtattattc                                                                                 >  2:2352831/1‑88 (MQ=255)
                            gATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCTTTAATTATc                                                                        >  2:3614838/1‑99 (MQ=255)
                            gATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCt                                                                       >  2:3177595/1‑100 (MQ=255)
                            gATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCt                                                                       >  2:3349744/1‑100 (MQ=255)
                             aTTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCt                                                                       <  2:633117/100‑1 (MQ=255)
                              ttCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCtat                                                                     <  1:1759816/100‑1 (MQ=255)
                                cTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCtata                                                                    <  1:1316337/100‑1 (MQ=255)
                                  ttccgatcttCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCtatata                                                                  <  1:1737182/92‑1 (MQ=255)
                                  gCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTatatat                                                                 <  1:3881830/100‑1 (MQ=255)
                                  gCAAGCTATTCAGGCTTTTCATTCCATGTAAGTTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTatatat                                                                 >  1:2803657/1‑100 (MQ=255)
                                   cAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATAtt                                                                >  1:1606014/1‑100 (MQ=255)
                                    aacatATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATAttt                                                               <  2:521272/96‑1 (MQ=255)
                                    aaGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATAttt                                                               >  1:410125/1‑100 (MQ=255)
                                     aGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACAAATATATTATCCTTAATTATCTATATAtt                                                                >  2:4151454/1‑99 (MQ=255)
                                        tATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTcc                                                            <  1:1889912/100‑1 (MQ=255)
                                         aTTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCt                                                           <  2:3413970/100‑1 (MQ=255)
                                         aTTCAGTCTTTACATTCCATGTAAATTATCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTcc                                                            <  2:1281670/98‑1 (MQ=255)
                                         aTTAAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTa                                                          <  2:932796/100‑1 (MQ=255)
                                           tCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCtatataagatcggaa                                                         >  2:1737172/1‑91 (MQ=255)
                                              gTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTAttttt                                                     >  1:3687043/1‑100 (MQ=255)
                                               tCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTc                                                    <  1:265607/100‑1 (MQ=255)
                                                 ttttCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTc                                                    <  2:1732394/99‑1 (MQ=255)
                                                  tttCATTCCATGTAAATTGTCTCGATATTAATATACATAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAgc                                                 <  2:1849407/100‑1 (MQ=255)
                                                  tttCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAg                                                  <  2:3911579/100‑1 (MQ=255)
                                                  tttCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAg                                                  <  2:32702/100‑1 (MQ=255)
                                                  tttCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAgc                                                 >  2:2711727/1‑100 (MQ=255)
                                                  tttCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAgc                                                 <  2:681063/100‑1 (MQ=255)
                                                  tttCATTCCATGTAAATTATCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAg                                                  <  2:2279502/100‑1 (MQ=255)
                                                   ttCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAgcg                                                <  1:163080/100‑1 (MQ=255)
                                                   ttCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAgcg                                                <  2:3098720/100‑1 (MQ=255)
                                                   ttCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAgc                                                 >  2:1522395/1‑99 (MQ=255)
                                                      aTTCAATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCa                                              <  2:2481652/100‑1 (MQ=255)
                                                         ccATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAAATATCTATATATTTTCCTATTTTTCTGCGCaaa                                            >  2:3640079/1‑99 (MQ=255)
                                                          cATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACAt                                         <  1:2557329/100‑1 (MQ=255)
                                                          cATGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACAt                                         >  1:1472911/1‑100 (MQ=255)
                                                           aTGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACAtt                                        >  1:3765198/1‑100 (MQ=255)
                                                            tGTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACAtt                                        >  2:2752387/1‑99 (MQ=255)
                                                             gTAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCa                                      >  1:2373187/1‑100 (MQ=255)
                                                              tAAATTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCa                                      <  2:963488/99‑1 (MQ=255)
                                                               aaaTTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCAt                                     <  1:3135660/100‑1 (MQ=255)
                                                               aaaTTGTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATg                                    <  1:513366/100‑1 (MQ=255)
                                                                aaTTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATg                                    <  1:7246/100‑1 (MQ=255)
                                                                 aTTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGt                                   <  1:1051428/100‑1 (MQ=255)
                                                                 aTTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGt                                   <  1:2255633/100‑1 (MQ=255)
                                                                   cgTCTCGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAAt                                <  1:3246807/99‑1 (MQ=255)
                                                                     tctcGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGa                              >  2:3685298/1‑100 (MQ=255)
                                                                       tcGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGaat                            <  2:2855666/100‑1 (MQ=255)
                                                                       tcGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGaat                            <  1:628405/100‑1 (MQ=255)
                                                                        cGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTagatcgga                           >  1:1451261/1‑93 (MQ=255)
                                                                        cGATATTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGaata                           >  2:2058540/1‑100 (MQ=255)
                                                                            atTAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTa                       <  2:1373268/100‑1 (MQ=255)
                                                                             ttAATATACAAAATATGAATATAAAAGACCAATATATTAGCCTTAATTATCTATATATTTTCCTCTTTTTCAGCGCAAACATTCATGTAATGAATAAtt                        <  2:2684706/99‑1 (MQ=255)
                                                                             ttAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTa                       <  1:1015886/100‑1 (MQ=255)
                                                                             ttAATATACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTAt                      >  1:38188/1‑100 (MQ=255)
                                                                                atatACAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCGATTTTTCAGCGCAAACATTCATGTAATGAATAATTATccc                   <  1:3805415/100‑3 (MQ=255)
                                                                                 tataCAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATcccc                  <  2:3705160/100‑1 (MQ=255)
                                                                                  ataCAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATcacca                 >  1:2414764/1‑100 (MQ=255)
                                                                                   taCAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATcacca                 >  2:1452211/1‑100 (MQ=255)
                                                                                   taCAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATcaccac                >  2:3805282/1‑100 (MQ=255)
                                                                                   taCAAAATATGAATAT‑AAAAACCAATATATTATACTTAATTATCTATATATTTTCCTATTTTTCATCGCAAAAATTCATGTAATGAATAATTATtacaac                >  2:1470136/1‑100 (MQ=255)
                                                                                     cAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACaa              >  1:2303879/1‑100 (MQ=255)
                                                                                     cAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACaa              >  1:2724808/1‑100 (MQ=255)
                                                                                     cAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACaa              >  1:4117073/1‑100 (MQ=255)
                                                                                     cAAAATATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACaa              >  2:3650006/1‑100 (MQ=255)
                                                                                        aaTATGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAacc           <  1:1086598/100‑1 (MQ=255)
                                                                                         atatGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAacca          <  1:3106743/100‑1 (MQ=255)
                                                                                           atGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAaccacc        <  1:924005/100‑1 (MQ=255)
                                                                                           atGAATAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAaccacc        <  1:2149467/100‑1 (MQ=255)
                                                                                              aaTATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAACCACCTc      >  1:297653/1‑100 (MQ=255)
                                                                                              aaTAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCTCAAATATTCATGTAATTAATAATTATCACCACAAACCACCTCa     >  2:758855/1‑100 (MQ=255)
                                                                                              aaTAT‑AAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAACCACCTCa     >  2:705672/1‑100 (MQ=255)
                                                                                               atatAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAACCACCTCa     >  1:1361630/1‑100 (MQ=255)
                                                                                               atatAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAACCACCTCa     >  2:2102767/1‑100 (MQ=255)
                                                                                                  taAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAACCACCTCACCa  >  1:2219336/1‑100 (MQ=255)
                                                                                                   |                                                                                                  
ATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAACCAATATATTATCCTTAATTATCTATATATTTTCCTATTTTTCAGCGCAAACATTCATGTAATGAATAATTATCACCACAAACCACCTCACCA  >  NC_000913/3360812‑3361009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A