Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F133 I0 R1 200 171.4 8351354 94.3% 7875326 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,701,868 C→A 77.3% R334L (CGT→CTT)  dppF ← dipeptide/heme ABC transporter ATPas

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,701,8680CA77.3% 349.5 / 115.4 181R334L (CGT→CTT) dppFdipeptide/heme ABC transporter ATPas
Reads supporting (aligned to +/- strand):  ref base C (23/18);  new base A (71/67);  total (95/86)
Fisher's exact test for biased strand distribution p-value = 7.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01

Only 100 of 182 total aligned reads displayed.

GCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCG  >  NC_000913/3701769‑3701965
                                                                                                    |                                                                                                 
 ccTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACg                                                                                                  <  1:359329/100‑1 (MQ=255)
    ggCTGCTTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTg                                                                                               >  1:656376/1‑100 (MQ=255)
    ggCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTg                                                                                               >  2:2460110/1‑100 (MQ=255)
    ggCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTg                                                                                               >  1:2880521/1‑100 (MQ=255)
     gCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGc                                                                                              >  1:3649590/1‑100 (MQ=255)
     gCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGc                                                                                              <  1:1663071/100‑1 (MQ=255)
      cTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCg                                                                                             <  1:425094/100‑1 (MQ=255)
      cTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCg                                                                                             <  1:3397939/100‑1 (MQ=255)
       tGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCgg                                                                                            >  1:2994285/1‑100 (MQ=255)
         aTTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGAt                                                                                          >  2:2247603/1‑100 (MQ=255)
          ttCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGAtt                                                                                         >  2:1257468/1‑100 (MQ=255)
            ctgctgTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGAttt                                                                                        >  2:1988897/1‑99 (MQ=255)
            ctgctgTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGAtttt                                                                                       >  1:1859579/1‑100 (MQ=255)
              gctgTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCa                                                                                     >  2:3062016/1‑100 (MQ=255)
              gctgTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCa                                                                                     <  2:754530/100‑1 (MQ=255)
              gctgTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCa                                                                                     >  1:2757302/1‑100 (MQ=255)
              gctgTACGGAATTTTGCAATTCTTGTCGCCAGTGTTCAAGCTTACTGAGTAAACCGGAGCGCATG‑TCCCCGGTTTTGTGAGTTAAAGTTGCg                                                                                             <  2:122615/92‑1 (MQ=255)
               ctgTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCAt                                                                                    <  1:4108188/100‑1 (MQ=255)
                tgTAAGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATc                                                                                   <  2:1940991/100‑1 (MQ=255)
                 gTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATcc                                                                                  <  1:1578087/100‑1 (MQ=255)
                 gTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATcc                                                                                  <  1:1067842/100‑1 (MQ=255)
                 gTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGAGTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATcc                                                                                  <  2:805917/100‑1 (MQ=255)
                  tACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCt                                                                                 >  2:876555/1‑100 (MQ=255)
                   aCGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTg                                                                                >  1:700731/1‑100 (MQ=255)
                    cGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGa                                                                               <  2:3365816/100‑1 (MQ=255)
                      gCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATc                                                                             <  2:3976841/100‑1 (MQ=255)
                       cATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATc                                                                             <  2:808303/99‑1 (MQ=255)
                       cATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCa                                                                            <  1:11253/100‑1 (MQ=255)
                            tGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGc                                                                       <  1:1614726/100‑1 (MQ=255)
                             gCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCa                                                                      >  1:618989/1‑100 (MQ=255)
                             gCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCa                                                                      >  2:2729986/1‑100 (MQ=255)
                               tATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCaaa                                                                    >  2:213311/1‑100 (MQ=255)
                                aTGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑TCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCaaa                                                                    <  2:4120428/99‑1 (MQ=255)
                                 tGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAAc                                                                  >  1:473176/1‑100 (MQ=255)
                                 tGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAAc                                                                  >  2:3658865/1‑100 (MQ=255)
                                 tGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAAc                                                                  >  1:3777848/1‑100 (MQ=255)
                                   cTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCAGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAAc                                                                  >  1:3337024/1‑98 (MQ=255)
                                    ttGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAg                                                               <  2:1310773/100‑1 (MQ=255)
                                     tGTCTCCACTGTTGAAGCTGACTGAGTAACCCGGAGCTCATG‑GCCCCGTTTTTGTAAGTTAAAGCTGCGGATTTTCAGCCTGATCAACAGCAAAACAAGc                                                              <  2:4123333/100‑1 (MQ=255)
                                     tGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGc                                                              >  1:1925180/1‑100 (MQ=255)
                                     tGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGc                                                              >  2:1737082/1‑100 (MQ=255)
                                     tGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGc                                                              <  1:2475937/100‑1 (MQ=255)
                                      gTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCt                                                             >  1:1527810/1‑100 (MQ=255)
                                      gTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCt                                                             >  2:2096034/1‑100 (MQ=255)
                                       tCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGc                                                              <  2:395164/98‑1 (MQ=255)
                                        cgacACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTAc                                                           <  1:2684619/97‑1 (MQ=255)
                                        cGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTAc                                                           >  1:3929028/1‑100 (MQ=255)
                                        cGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTAc                                                           <  2:4008360/100‑1 (MQ=255)
                                        cGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTAc                                                           >  1:748115/1‑100 (MQ=255)
                                        cGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTAc                                                           >  2:1841518/1‑100 (MQ=255)
                                         gcgaCTGCTAAAGCTGATTGAGTAAACTGGAGCGCATG‑GCCCCGGTATTGTGAGTCAACGCTGCGGATTTTCATCCTGATCAACAGTAAACCAAGCTAcc                                                          <  2:1329316/97‑1 (MQ=255)
                                         gCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTAcc                                                          >  2:3029436/1‑100 (MQ=255)
                                         gCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTAcc                                                          <  1:4055937/100‑1 (MQ=255)
                                          ccACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCa                                                         <  1:3718860/100‑1 (MQ=255)
                                           cACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAg                                                        >  2:900708/1‑100 (MQ=255)
                                               gTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGa                                                    <  1:1719652/100‑1 (MQ=255)
                                                ttGAAGCTGATTGAGTAAAGCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGAc                                                   <  2:1618027/100‑1 (MQ=255)
                                                ttGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGAc                                                   <  2:2557848/100‑1 (MQ=255)
                                                 tGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGAcc                                                  >  2:1900924/1‑100 (MQ=255)
                                                 tGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCAGCTTCGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACACGCTACCAGTTGAcc                                                  >  2:3597629/1‑100 (MQ=255)
                                                     gCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGCccgcc                                               >  2:4090019/1‑99 (MQ=255)
                                                       tGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTa                                            <  1:3086434/100‑1 (MQ=255)
                                                        gtttGAGTAAACCGGAGCGCATG‑GTCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAg                                           <  2:1021623/98‑1 (MQ=255)
                                                        ggttGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAg                                           >  2:3206981/3‑100 (MQ=255)
                                                        gATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAg                                           <  2:1527801/100‑1 (MQ=255)
                                                            gAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCtt                                       <  1:2646749/100‑1 (MQ=255)
                                                            gAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCtt                                       <  1:801838/100‑1 (MQ=255)
                                                             aGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCttt                                      <  1:712494/100‑1 (MQ=255)
                                                              gTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCtttt                                     >  1:2129952/1‑100 (MQ=255)
                                                              gTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCtttt                                     <  1:3740659/100‑1 (MQ=255)
                                                              gTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCtttt                                     >  1:269907/1‑100 (MQ=255)
                                                               tAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTa                                    <  1:3310106/100‑1 (MQ=255)
                                                               tAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTa                                    <  2:4043341/100‑1 (MQ=255)
                                                                aaaCCGGGGC‑CATGCGCTCCGGTCTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCAGTAGTCGTTTAg                                   >  2:690890/1‑100 (MQ=255)
                                                                aaaCCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAg                                   >  2:2467116/1‑100 (MQ=255)
                                                                aaaCCGGAGCGCATG‑GCCCCCGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAg                                   >  2:2549260/1‑100 (MQ=255)
                                                                 aaCCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGc                                  >  2:3551395/1‑100 (MQ=255)
                                                                  aCCGAAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCACCGTAGTCTTTTAGCt                                 >  1:1944881/1‑100 (MQ=255)
                                                                   ccGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTg                                >  1:3231991/1‑100 (MQ=255)
                                                                   ccGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTg                                >  2:1397885/1‑100 (MQ=255)
                                                                      gAGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCg                              <  2:991426/99‑1 (MQ=255)
                                                                       aGCGCATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGc                            <  2:1169388/100‑1 (MQ=255)
                                                                         cgcATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTg                          <  2:3769937/100‑1 (MQ=255)
                                                                          gcATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGc                         >  2:118373/1‑100 (MQ=255)
                                                                           cATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCa                        <  1:237593/100‑1 (MQ=255)
                                                                           cATG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCa                        >  1:2878404/1‑100 (MQ=255)
                                                                             tG‑GCCCCGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAAc                      <  2:586520/100‑1 (MQ=255)
                                                                              g‑gCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACt                     <  1:2617820/100‑1 (MQ=255)
                                                                                gCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTg                    >  2:1242527/1‑100 (MQ=255)
                                                                                  cccGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTggg                  <  2:2158978/100‑1 (MQ=255)
                                                                                  cccGGTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTggg                  >  1:155342/1‑100 (MQ=255)
                                                                                     ggTTTTGTGAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGc               >  1:1232363/1‑100 (MQ=255)
                                                                                      gTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCa              <  2:463652/100‑1 (MQ=255)
                                                                                        tttGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAgg            <  1:1563259/100‑1 (MQ=255)
                                                                                          tgtgAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAggg           >  1:4133612/1‑99 (MQ=255)
                                                                                           gtgAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGAACGCCGTAGTCTTTTAGCTGCGTCTGCAACTGGGTGCAggg           >  1:908073/1‑98 (MQ=255)
                                                                                            tgAGTTAAAGCTGCGGATTTTCATCCTGATCAACATCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGGGGCTGCAACTGGGTGCAGGGGcc        <  2:1827674/100‑1 (MQ=255)
                                                                                            tgAGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAGCAAGCTACCAGTTGGCCGCCGTGGGCTTTTACCTGCGGCTGCAACTGGGTGCAGGGGcc        <  2:982229/100‑1 (MQ=255)
                                                                                             naGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCg       >  1:229489/2‑100 (MQ=255)
                                                                                              aGTTAAAGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGa      >  1:3875882/1‑100 (MQ=255)
                                                                                                    |                                                                                                 
GCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATG‑GCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCG  >  NC_000913/3701769‑3701965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A