Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F133 I0 R1	200	171.4	8351354	94.3%	7875326	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,704,719	G→T	17.5%	P15T (CCG→ACG)	dppC ←	dipeptide/heme ABC transporter permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,704,719	0	G	T	17.5%	476.2 / 84.5	198	P15T (CCG→ACG)	dppC	dipeptide/heme ABC transporter permease
Reads supporting (aligned to +/- strand): ref base G (76/87); new base T (19/16); total (95/103)
Fisher's exact test for biased strand distribution p-value = 4.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.47e-01

Only 100 of 209 total aligned reads displayed.

CGCGATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGATC  >  NC_000913/3704624‑3704818

cgcgATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCAcc                                                                                                 >  1:560191/1‑100 (MQ=255)

 gcgATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCg                                                                                                >  2:3773526/1‑100 (MQ=255)

  cgATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCgg                                                                                               >  1:2574311/1‑100 (MQ=255)

   gATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATAGGCACCGGt                                                                                              >  2:3748983/1‑100 (MQ=255)

     tGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTgc                                                                                            >  1:1135112/1‑100 (MQ=255)

     tGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTgc                                                                                            <  2:1510311/100‑1 (MQ=255)

     tGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTgc                                                                                            >  2:712573/1‑100 (MQ=255)

      gAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTgcg                                                                                           <  1:3021707/100‑1 (MQ=255)

       aaCAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTgcgc                                                                                          <  2:3454254/100‑1 (MQ=255)

        aCAGCACGAGGACGGCGTAAACCAGCCCGAGGACCGCGCCTTTGTTGCTTTTAAAATAGTGCGAGAACTACTGTAACGGGGTCATCGGCACCGGTGGGCt                                                                                         <  2:3507016/100‑1 (MQ=255)

          atctcGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTaa                                                                                       <  2:1066690/96‑1 (MQ=255)

          aGCACGATGACGACGTAAACCAGCCCGCCGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTaa                                                                                       >  2:2935167/1‑100 (MQ=255)

          aGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAGATAGTGCCAGAACTCCTGTAACGGGGCCATCGGCACCGGTGCGCTaa                                                                                       >  1:3360435/1‑100 (MQ=255)

          aGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTaa                                                                                       >  1:59089/1‑100 (MQ=255)

            cACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATc                                                                                     <  1:798188/100‑1 (MQ=255)

                aTGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACtt                                                                                 >  1:3580063/1‑100 (MQ=255)

                aTGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACtt                                                                                 >  2:418822/1‑100 (MQ=255)

                  gacgacGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGTTAATCACTTTa                                                                               <  2:2188692/100‑1 (MQ=255)

                  gacgacGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTa                                                                               >  2:3300057/1‑100 (MQ=255)

                   acgacgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTAt                                                                              >  1:456521/1‑100 (MQ=255)

                    cgacgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTAtt                                                                             >  1:2691232/1‑100 (MQ=255)

                     gacgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTAttt                                                                            <  1:3743161/100‑1 (MQ=255)

                      acgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTAtttt                                                                           >  2:2280047/1‑100 (MQ=255)

                       cgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTAtt                                                                             <  1:1752439/97‑1 (MQ=255)

                       cgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTc                                                                          <  1:3893323/100‑1 (MQ=255)

                         tAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAg                                                                        >  1:902435/1‑100 (MQ=255)

                         tAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAg                                                                        <  2:3955489/100‑1 (MQ=255)

                         tAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAg                                                                        <  2:560187/100‑1 (MQ=255)

                         tAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAg                                                                        <  2:2154088/100‑1 (MQ=255)

                             ccAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAAc                                                                    <  1:3107331/100‑1 (MQ=255)

                               aGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCCTCGGCACCGACGCGCTAATCACTTTATTTTCAGTAAcc                                                                   >  2:199644/1‑99 (MQ=255)

                                 cccGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCtgt                                                                <  2:3259343/100‑1 (MQ=255)

                                   cgacgaCCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGa                                                              <  2:604891/100‑1 (MQ=255)

                                    gacgacCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGAc                                                             <  2:1132579/100‑1 (MQ=255)

                                    gacgacCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGAc                                                             <  1:1658574/100‑1 (MQ=255)

                                      cgacCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACat                                                           >  2:899779/1‑100 (MQ=255)

                                          cgcgCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACatgatg                                                       <  1:2960163/100‑1 (MQ=255)

                                            cgcCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTCACGGGGTAATCGGCCCCGGTGCGCTAATCACTTTATTTGCAGTAACCTGTGACATGATGTc                                                     <  2:1870428/100‑1 (MQ=255)

                                              ccgttgttgCGTTTAAAATAGTACCAGAACTCCTGTAACGGGGGCATCGGCACCGGTGCGCTAACCACTATATTTTCAGTAACCTGTGACATGATGTcac                                                   >  2:1262103/4‑98 (MQ=255)

                                               cTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTcccc                                                  <  1:2028306/100‑1 (MQ=255)

                                                tttGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCt                                                 <  2:4093957/100‑1 (MQ=255)

                                                 tctttgCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCtt                                                <  1:3845363/97‑1 (MQ=255)

                                                   gttgCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTAc                                              >  1:3985008/1‑100 (MQ=255)

                                                   gttgCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCGCTTAc                                              >  1:2483083/1‑100 (MQ=255)

                                                    ttgCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTaga                                             >  2:3845334/1‑98 (MQ=255)

                                                      gCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTActtc                                           <  1:2069145/100‑1 (MQ=255)

                                                       cGTTTAAAATAGTGCCAGAACTCCTGTAGCGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTActtct                                          >  2:84631/1‑100 (MQ=255)

                                                       cGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTActtct                                          >  1:4120914/1‑100 (MQ=255)

                                                       cGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTActtct                                          >  1:280612/1‑100 (MQ=255)

                                                         tttAAAATAGTGCCAGATCTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTa                                        <  2:1235223/100‑1 (MQ=255)

                                                         tttAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTa                                        <  1:2408274/100‑1 (MQ=255)

                                                          ttAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTAt                                       <  1:3946827/100‑1 (MQ=255)

                                                           tAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATg                                      <  1:1420662/100‑1 (MQ=255)

                                                           tAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATg                                      >  1:3799878/1‑100 (MQ=255)

                                                           tAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTGACCTGTGACATGATGTCCCCTTACTTCTTATg                                      <  2:3657544/100‑1 (MQ=255)

                                                           tAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATg                                      <  1:2204536/100‑1 (MQ=255)

                                                            aagaTAGTGCCAGAACTCCTGTAACGAGCTCATCGGCACCGGCGCGCAAATCACTTTATTTTCAGTAAATTGTGACATGATGTCCCCTTAGTTGTTa                                        >  2:1087172/4‑97 (MQ=255)

                                                             aaaTAGTGCCAGAACTCCTGTAACGGTGTCATCGTCACCGGTGCGCTAACCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGa                                     >  2:3596686/1‑99 (MQ=255)

                                                             aaaTAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGAc                                    >  2:3492490/1‑100 (MQ=255)

                                                             aaaTAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGAc                                    >  2:2034115/1‑100 (MQ=255)

                                                             aaaTAGTGCCAGAACTCCTGTAACGGGGTAATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTCTg                                      >  1:1210145/1‑98 (MQ=255)

                                                              aaTAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACg                                   >  1:3071110/1‑100 (MQ=255)

                                                              aaTAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACg                                   <  1:3306558/100‑1 (MQ=255)

                                                              aaTAGTGCCAGAACTCCTGTAACCGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACg                                   <  2:3397745/100‑1 (MQ=255)

                                                               aTAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGa                                  <  1:4038872/100‑1 (MQ=255)

                                                                 aGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAAt                                <  1:2663810/100‑1 (MQ=255)

                                                                           ntCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCACCTTACTTCTTATGACGAATACGCGGGTTc                      >  1:1004530/2‑100 (MQ=255)

                                                                           cTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTc                      >  1:1044452/1‑100 (MQ=255)

                                                                           cTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAAGACGCggg                         <  2:2589275/97‑1 (MQ=255)

                                                                            tCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTca                     <  1:1458443/100‑1 (MQ=255)

                                                                             ccTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATAGGCGGGTTca                     >  2:2391272/1‑99 (MQ=255)

                                                                             ccTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTcac                    >  2:1603475/1‑100 (MQ=255)

                                                                              cTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTcacc                   >  1:976028/1‑100 (MQ=255)

                                                                              cTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTcacc                   <  1:2350496/100‑1 (MQ=255)

                                                                                gTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTcaccac                 >  1:538033/1‑100 (MQ=255)

                                                                                gTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCCGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTcaccac                 >  2:2883650/1‑100 (MQ=255)

                                                                                  aaCGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGc               >  2:2132614/1‑100 (MQ=255)

                                                                                   aCGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGcc              >  1:3251049/1‑100 (MQ=255)

                                                                                   aCGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGcc              >  1:2019427/1‑100 (MQ=255)

                                                                                   aCGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGcc              <  1:3492516/100‑1 (MQ=255)

                                                                                    cGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCg             >  1:1684306/1‑100 (MQ=255)

                                                                                     ggggTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGt            <  1:1353568/100‑1 (MQ=255)

                                                                                        gTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAca         >  1:2977748/1‑100 (MQ=255)

                                                                                        gTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAca         <  2:1880650/100‑1 (MQ=255)

                                                                                          cATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTTACCACGCCGTAcagc       <  1:418825/100‑1 (MQ=255)

                                                                                          cATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAcagc       >  2:2828436/1‑100 (MQ=255)

                                                                                          cATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAcagc       <  1:2998057/100‑1 (MQ=255)

                                                                                          cATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAcagc       <  2:1732255/100‑1 (MQ=255)

                                                                                          cATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCCGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAcagc       >  2:2707790/1‑100 (MQ=255)

                                                                                           aTCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTGCTTATGACGAATACGCGGGTTCACTACGCCGTAcagca      <  2:2574296/100‑1 (MQ=255)

                                                                                             cGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGa    >  2:573633/1‑100 (MQ=255)

                                                                                              ggCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGAt   >  2:2126752/1‑100 (MQ=255)

                                                                                              ggCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGAt   <  1:2280061/100‑1 (MQ=255)

                                                                                              ggCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGAt   <  2:3122095/100‑1 (MQ=255)

                                                                                              ggCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGAt   >  2:2632201/1‑100 (MQ=255)

                                                                                              ggCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGAt   >  2:920847/1‑100 (MQ=255)

                                                                                              ggCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACCAATACGCGGGTTCACCACGCCGTACAGCAGAt   >  2:2494285/1‑100 (MQ=255)

                                                                                              ggCACCGGTGCGCTAAGCACTTTATCTTCGGTAACCTGTGCCATGATGTCGCAGCACTTCCTATGACGAACACGCGGCTTCACGACGCCGTAcagcagc    >  2:2429731/1‑98 (MQ=255)

                                                                                               gCACCGTTGCACTAATCACTTTGTTTACAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGATc  <  1:1581422/100‑1 (MQ=255)

                                                                                               gCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGATc  <  1:1283974/100‑1 (MQ=255)

CGCGATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGATC  >  NC_000913/3704624‑3704818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A