Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F204 I0 R1	247	174.3	8556966	94.2%	8060661	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,704,719	G→T	52.7%	P15T (CCG→ACG)	dppC ←	dipeptide/heme ABC transporter permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,704,719	0	G	T	52.7%	5.5 / 255.4	164	P15T (CCG→ACG)	dppC	dipeptide/heme ABC transporter permease
Reads supporting (aligned to +/- strand): ref base G (34/43); new base T (42/44); total (77/87)
Fisher's exact test for biased strand distribution p-value = 6.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.05e-01

Only 100 of 170 total aligned reads displayed.

AGATCGCGATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGATC  >  NC_000913/3704620‑3704818

aGATCGCGATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCgg                                                                                                     <  1:224995/100‑1 (MQ=255)

    cgcgATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCAcc                                                                                                 <  1:2737781/100‑1 (MQ=255)

    cgcgATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCAcc                                                                                                 >  2:4246380/1‑100 (MQ=255)

    cgcgATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCAcc                                                                                                 >  2:2301479/1‑100 (MQ=255)

     gcgATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCg                                                                                                >  2:4143632/1‑100 (MQ=255)

        aTGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTg                                                                                             <  1:2301029/100‑1 (MQ=255)

         tGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTgc                                                                                            <  2:2336680/100‑1 (MQ=255)

           aaCAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTgcgc                                                                                          <  1:3363556/100‑1 (MQ=255)

            aCAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCt                                                                                         <  1:863813/100‑1 (MQ=255)

               gCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAAt                                                                                      >  1:1287828/1‑100 (MQ=255)

                 aCGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCa                                                                                    <  2:55529/100‑1 (MQ=255)

                 aCGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCa                                                                                    <  1:766197/100‑1 (MQ=255)

                    aTGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACtt                                                                                 <  1:457683/100‑1 (MQ=255)

                    aTGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACtt                                                                                 <  1:3220651/100‑1 (MQ=255)

                       acgacgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTAt                                                                              >  2:2583785/1‑100 (MQ=255)

                       acgacgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAACAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGTTTATCACTTTAt                                                                              >  2:1686878/1‑100 (MQ=255)

                        cgacgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTAtt                                                                             >  1:227026/1‑100 (MQ=255)

                         gacgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTAttt                                                                            <  1:2101544/100‑1 (MQ=255)

                          acgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTGTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTAtttt                                                                           <  2:3003528/100‑1 (MQ=255)

                           cgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACCGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTc                                                                          <  1:2278270/100‑1 (MQ=255)

                           cgTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAATGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTc                                                                          <  1:3265923/100‑1 (MQ=255)

                             tAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAg                                                                        <  2:2539262/100‑1 (MQ=255)

                             tAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAg                                                                        <  2:3174063/100‑1 (MQ=255)

                             tAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTctg                                                                        <  2:2878339/100‑3 (MQ=255)

                             tAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAg                                                                        <  2:3334276/100‑1 (MQ=255)

                             tAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAg                                                                        <  2:3796544/100‑1 (MQ=255)

                             tAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCACAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAg                                                                        <  2:408135/100‑1 (MQ=255)

                              aaaCCAGCCCGACGACCGCGCCTTTGTTGGGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGt                                                                       <  1:2569988/100‑1 (MQ=255)

                              aaaCCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGt                                                                       <  2:1682589/100‑1 (MQ=255)

                                aCCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTaa                                                                     >  1:3007572/1‑100 (MQ=255)

                                aCCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTaa                                                                     >  2:1063814/1‑100 (MQ=255)

                                 ccAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAAc                                                                    >  1:2021732/1‑100 (MQ=255)

                                      ccGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTGATCACTTTATTTTCAGTAACCtgtg                                                               >  2:2550864/1‑100 (MQ=255)

                                       cgacgaCCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGa                                                              >  2:3806860/1‑100 (MQ=255)

                                        gacgacCGCGCCTTTGTTGCGTTTAAAATAGTGTCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGCAACCTGTGAc                                                             >  1:2814935/1‑100 (MQ=255)

                                        gacgacCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGa                                                              <  1:1565351/99‑1 (MQ=255)

                                         acgacCGCGCCTTTGTTGCGTTTAAAATAGTTCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACa                                                            <  2:2489760/100‑1 (MQ=255)

                                           gacCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACatg                                                          <  1:1318234/100‑1 (MQ=255)

                                            acCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTTTGACatg                                                          >  1:3614610/1‑99 (MQ=255)

                                            acCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACatga                                                         >  2:3084908/1‑100 (MQ=255)

                                            acCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAACCACTTTATTTTCAGTAACCTGTGAc                                                             >  1:3620576/1‑96 (MQ=255)

                                             ccGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACatgat                                                        >  2:1166672/1‑100 (MQ=255)

                                             ccGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACatgat                                                        >  1:2392733/1‑100 (MQ=255)

                                             ccGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACatga                                                         <  1:2069591/99‑1 (MQ=255)

                                                  ccTTTGTTACGATTAGAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACGGGTGCGCATATCACTTTAGTTTCAGTAACCGATGACctgctg                                                       >  1:1393075/1‑96 (MQ=255)

                                                    tttGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCt                                                 >  1:184821/1‑100 (MQ=255)

                                                    tttGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCAAATCACTTTATTTTCAGTAACCTGTGACATGATGTACCCt                                                 >  1:894939/1‑100 (MQ=255)

                                                       gttgCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTAc                                              >  2:43223/1‑100 (MQ=255)

                                                       gttgCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTCACCTGTGACATGATGTCCCCTTAc                                              >  1:650558/1‑100 (MQ=255)

                                                          gCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTActtc                                           <  1:1246486/100‑1 (MQ=255)

                                                           cGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTActtct                                          <  2:642025/100‑1 (MQ=255)

                                                            gTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTActtctt                                         >  2:2749337/1‑100 (MQ=255)

                                                            gTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGCCATGATGTCCCCTTActtctt                                         >  2:1305606/1‑100 (MQ=255)

                                                             tttAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTa                                        >  1:2901684/1‑100 (MQ=255)

                                                              ttAAAATAGTGCCAGAACTACTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTAt                                       <  2:2609497/100‑1 (MQ=255)

                                                               tAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATg                                      <  1:2664208/100‑1 (MQ=255)

                                                               tAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATg                                      <  1:3663320/100‑1 (MQ=255)

                                                                aaaaTAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGa                                     <  2:661197/100‑1 (MQ=255)

                                                                aaaaTAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGa                                     >  2:368412/1‑100 (MQ=255)

                                                                 aaaTAGTGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGAc                                    >  2:793846/1‑100 (MQ=255)

                                                                  aaTAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACg                                   <  1:651518/100‑1 (MQ=255)

                                                                    tAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGaa                                 >  1:1686734/1‑100 (MQ=255)

                                                                    tAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGaa                                 >  1:2978635/1‑100 (MQ=255)

                                                                    tAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGaa                                 >  1:2571217/1‑100 (MQ=255)

                                                                       tGCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATAc                              >  2:3719060/1‑100 (MQ=255)

                                                                        gCCAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATAcg                             >  2:3235919/1‑100 (MQ=255)

                                                                        gCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATAcg                             >  2:2043424/1‑100 (MQ=255)

                                                                         ccAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATAcgc                            >  2:1377309/1‑100 (MQ=255)

                                                                          cAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATAcgcg                           <  2:4091411/100‑1 (MQ=255)

                                                                          cAGAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATAcgcg                           <  1:3235907/100‑1 (MQ=255)

                                                                           aGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCgg                          >  2:3692618/1‑100 (MQ=255)

                                                                            gAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCggg                         <  2:1734090/100‑1 (MQ=255)

                                                                            gAACTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCggg                         <  1:3371183/100‑1 (MQ=255)

                                                                             aaCTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGt                        <  2:3879394/100‑1 (MQ=255)

                                                                              aCTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGtt                       >  1:1089008/1‑100 (MQ=255)

                                                                              aCTCCTGTAACGGGGTCATCGGCACCGGTGCGATAATCACTTTAGTTTCAGTAACCTGTTACATGATGTCCCCTTACTTCTTATGACGAATACGCggct                        >  1:1047894/1‑97 (MQ=255)

                                                                               cTCCTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTc                      >  1:3738020/1‑100 (MQ=255)

                                                                               cTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTc                      >  1:1001316/1‑100 (MQ=255)

                                                                                  cTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTcacc                   <  2:2796323/100‑1 (MQ=255)

                                                                                  cTGTAACGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTcacc                   <  1:313139/100‑1 (MQ=255)

                                                                                  cTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCAGGTTcacc                   >  1:2404223/1‑100 (MQ=255)

                                                                                    gTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGTGGGTTcaccac                 <  1:1512016/100‑1 (MQ=255)

                                                                                    gTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTcaccac                 >  2:3315181/1‑100 (MQ=255)

                                                                                       aCGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGcc              <  1:3748903/100‑1 (MQ=255)

                                                                                        cGGGGTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCg             <  2:2392739/100‑1 (MQ=255)

                                                                                        cGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCg             <  2:1539300/100‑1 (MQ=255)

                                                                                          gggTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTa           <  1:2495266/100‑1 (MQ=255)

                                                                                          gggTCAACGACACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTGATGACGAATACGCGGGTTCACCACGCCGTa           >  1:1790421/1‑100 (MQ=255)

                                                                                            gTCATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAca         <  1:3602930/100‑1 (MQ=255)

                                                                                              cATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAcagc       >  2:3495592/1‑100 (MQ=255)

                                                                                              cATCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAcagc       >  2:1771409/1‑100 (MQ=255)

                                                                                              cATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAcagc       <  2:821073/100‑1 (MQ=255)

                                                                                              cATCAGCCCCGGTGCGCTAATCACTTTATGTTCATTACCCTGTGACATGATGTCCCCTTACTTCTTATCACGAATACGCGGGTTCACCACGCCGTAcagc       <  1:1445247/100‑1 (MQ=255)

                                                                                               aTCGTCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAcagca      >  2:2562632/1‑100 (MQ=255)

                                                                                                tCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTAcagcag     >  2:3852797/1‑100 (MQ=255)

                                                                                                 cGGCACCGGTGCGCTAATCACTTTATTTTCAGCAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGa    >  2:2208982/1‑100 (MQ=255)

                                                                                                   gCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCCCCACGCCGTACAGCAGATc  >  1:2697579/1‑100 (MQ=255)

                                                                                                   gCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGATc  <  1:3443933/100‑1 (MQ=255)

                                                                                                   gCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGATc  <  2:1885376/100‑1 (MQ=255)

                                                                                                   gCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCAGTACAGCAGATc  <  2:2807138/100‑1 (MQ=255)

AGATCGCGATGAACAGCACGATGACGACGTAAACCAGCCCGACGACCGCGCCTTTGTTGCGTTTAAAATAGTGCCAGAACTCCTGTAACGGGGTCATCGGCACCGGTGCGCTAATCACTTTATTTTCAGTAACCTGTGACATGATGTCCCCTTACTTCTTATGACGAATACGCGGGTTCACCACGCCGTACAGCAGATC  >  NC_000913/3704620‑3704818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A