Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I1 R1
|
165 |
53.8 |
2611523 |
96.4% |
2517508 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,778,470 |
A→G |
Y278H (TAC→CAC) |
ydiP ← |
putative DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,778,470 | 0 | A | G | 98.4%
| 227.8
/ NA
| 64 | Y278H (TAC→CAC) | ydiP | putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (34/29); total (34/30) |
| Fisher's exact test for biased strand distribution p-value = 4.69e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGCCTGTGATAA > NC_000913/1778371‑1778566
|
aCAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTa > 2:278433/1‑100 (MQ=255)
aaCTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATc < 1:124892/100‑1 (MQ=255)
cTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGc < 1:1207887/100‑1 (MQ=255)
cTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGc > 1:853171/1‑100 (MQ=255)
cgccgcCAGATTTATCCAACAAGACTTTCCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTgg < 1:450606/100‑1 (MQ=255)
gccgccAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTggg < 2:1216562/100‑1 (MQ=255)
ccgccAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGc > 1:845828/1‑100 (MQ=255)
cgccAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCg > 2:823876/1‑100 (MQ=255)
cgccAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCg > 2:355510/1‑100 (MQ=255)
cgccAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCg > 1:13762/1‑100 (MQ=255)
gccAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCg < 2:999179/99‑1 (MQ=255)
gccAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGa > 1:221882/1‑100 (MQ=255)
gcAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGaa > 2:237102/2‑100 (MQ=255)
cAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGaa > 2:881845/1‑99 (MQ=255)
tttATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGaacaacn < 1:278644/100‑2 (MQ=255)
tttATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAAcc < 1:321740/100‑1 (MQ=255)
tttATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAAcc > 1:423942/1‑100 (MQ=255)
aTCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAAcc < 1:278436/97‑1 (MQ=255)
aCTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCaaa > 1:615074/1‑100 (MQ=255)
tACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAAc > 2:741568/1‑100 (MQ=255)
tACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAAc > 2:159875/1‑100 (MQ=255)
ggTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGtt < 2:1009671/100‑1 (MQ=255)
ttGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTg < 2:1302781/100‑1 (MQ=255)
tGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTgg < 2:1035891/100‑1 (MQ=255)
tGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTgg > 1:280818/1‑100 (MQ=255)
gAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTgg < 1:221213/99‑1 (MQ=255)
ggAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCaa < 1:1105785/100‑1 (MQ=255)
aaaTTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAg < 1:182751/100‑1 (MQ=255)
aaaTTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGCTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAg > 2:1295348/1‑100 (MQ=255)
gATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAACCAGTTTGACAAAGTGATCGa > 1:1253425/1‑100 (MQ=255)
aTAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGAc > 1:230980/1‑100 (MQ=255)
ggATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACAt > 1:1080917/1‑99 (MQ=255)
ttCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCa < 2:515275/100‑1 (MQ=255)
cTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATa > 2:504092/1‑100 (MQ=255)
cTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATa > 1:861682/1‑100 (MQ=255)
ttGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATaa > 2:1179041/1‑100 (MQ=255)
gTTCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAAcc > 1:413777/1‑100 (MQ=255)
tCCGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCca > 2:236274/1‑100 (MQ=255)
ccGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCcac > 2:587935/1‑100 (MQ=255)
ccGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCcac < 2:413773/100‑1 (MQ=255)
cGCAAAACAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCcaca < 2:221880/100‑1 (MQ=255)
aaaCAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGcc > 2:1278297/1‑100 (MQ=255)
aaaCAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGcc < 1:618400/100‑1 (MQ=255)
aCAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAg < 1:1054603/100‑1 (MQ=255)
cAGTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAgg > 2:66905/1‑100 (MQ=255)
gTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCTAGgag < 1:454172/100‑1 (MQ=255)
gTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGgag < 2:230978/100‑1 (MQ=255)
gTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGgag > 2:888828/1‑100 (MQ=255)
gTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGgag < 1:261455/100‑1 (MQ=255)
gTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGgag < 2:571221/100‑1 (MQ=255)
gTTTTTAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGgag > 2:601823/1‑100 (MQ=255)
ttttAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGAt < 1:428003/100‑1 (MQ=255)
tttAAATTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGAtc > 1:803246/1‑100 (MQ=255)
aaaTTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATctct > 1:484524/1‑100 (MQ=255)
aaaTTGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATctct > 1:944860/1‑100 (MQ=255)
ttGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGcc < 1:2648/100‑1 (MQ=255)
ttGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGcc < 2:405991/100‑1 (MQ=255)
ttGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGcc < 2:13762/100‑1 (MQ=255)
ttGTCTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGcc < 1:741573/100‑1 (MQ=255)
cTACGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGCCtgtg < 1:1278308/100‑1 (MQ=255)
aCGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGCCTGTGAt > 1:419477/1‑100 (MQ=255)
aCGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGCCTGTGAt > 2:338169/1‑100 (MQ=255)
aCGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGCCTGTGAt > 1:1205680/1‑100 (MQ=255)
cGGTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGCCTGTGATa < 1:823882/100‑1 (MQ=255)
ggTGATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGCCTGTGATaa > 1:447144/1‑100 (MQ=255)
|
ACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAAGTGATCGACATTTTCATAACCCACACGCCAGGAGATCTCTGCCTGTGATAA > NC_000913/1778371‑1778566
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
