Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I1 R1
|
165 |
53.8 |
2611523 |
96.4% |
2517508 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,720,543 |
C→A |
R197R (CGC→CGA) |
pka → |
protein lysine acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,720,543 | 0 | C | A | 100.0%
| 189.3
/ NA
| 55 | R197R (CGC→CGA) | pka | protein lysine acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (26/29); total (26/29) |
GATGGGCTTTTCCTACTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGCGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTCGCGTAATAAACC > NC_000913/2720465‑2720638
|
gATGGGCTTTTCCTACTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATc > 2:735195/1‑100 (MQ=255)
aTGGGCTTTTCCTACTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGACGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATcc < 2:722877/100‑1 (MQ=255)
tGGGCTTTTCCTACTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCt > 2:1070223/1‑100 (MQ=255)
ggCTTTTCCTACTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGc < 2:663667/100‑1 (MQ=255)
gCTTTTCCTACTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGct < 2:727298/100‑1 (MQ=255)
ttttCCTACTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGctct < 1:851129/100‑1 (MQ=255)
ccTACTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTAtct > 2:421502/1‑100 (MQ=255)
aCTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGa < 2:1100374/100‑1 (MQ=255)
aCTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGa < 1:1161512/100‑1 (MQ=255)
aCTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGa > 1:480182/1‑100 (MQ=255)
cTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGaa > 1:275460/1‑100 (MQ=255)
tttATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAAc < 1:1149324/100‑1 (MQ=255)
tttATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAAc < 1:345043/100‑1 (MQ=255)
ttATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACa > 2:184992/1‑100 (MQ=255)
aTTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGt > 1:1065524/1‑100 (MQ=255)
aTTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGt < 1:134461/100‑1 (MQ=255)
ttGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGtt > 1:1026332/1‑100 (MQ=255)
gcgcTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTaa > 2:173602/1‑100 (MQ=255)
cgcTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAg > 2:258306/1‑100 (MQ=255)
gcTCGGCAACAGCCTGGATATCGAAGTTGATTAATTGCTTGACTAACGGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAgc < 2:1018604/100‑1 (MQ=255)
ggCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAgcgacg > 2:939583/1‑100 (MQ=255)
ggCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAgcga < 1:358506/98‑1 (MQ=255)
gCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAgcgacgc < 1:1230191/100‑1 (MQ=255)
cGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAgcgacgcg > 2:1264312/1‑100 (MQ=255)
gACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAgcgacgcgc > 2:835597/1‑100 (MQ=255)
gCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAgcgacgcgcgacg > 1:638834/1‑100 (MQ=255)
gCCTGGAGATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAgcgacgcgcgacg > 1:686937/1‑100 (MQ=255)
ccTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAgcgacgcgcgacgc > 1:450179/1‑100 (MQ=255)
ggATATCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCttt < 1:946023/100‑1 (MQ=255)
atCGACGTTGATGGATTGCTCGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGttt < 2:503402/100‑1 (MQ=255)
tCGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTc < 1:790850/100‑1 (MQ=255)
cGACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTc < 2:1143799/99‑1 (MQ=255)
gACGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTcgg > 2:1169344/1‑100 (MQ=255)
gACGTTGATGAATTGCTGGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTcgg < 1:905645/100‑1 (MQ=255)
aCGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTcggc < 1:258309/100‑1 (MQ=255)
cGTTGATGAATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTcggcg > 1:1004236/1‑100 (MQ=255)
ttGATGAATTGCTTGACTATCTGGCACGAGAAAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCggcggc > 1:510619/1‑100 (MQ=255)
tgatgaATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGcc < 2:1133434/100‑1 (MQ=255)
gatgaATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGccc > 2:651838/1‑100 (MQ=255)
tgaATTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGt < 2:982197/100‑1 (MQ=255)
aaTTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAg < 2:275457/100‑1 (MQ=255)
aTTGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGt < 1:1070233/100‑1 (MQ=255)
ttGCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTg < 1:216283/100‑1 (MQ=255)
gCTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGcc < 1:789537/100‑1 (MQ=255)
cTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCt > 1:980713/1‑100 (MQ=255)
cTTGACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGACCGTAGTGCCt > 2:1002595/1‑100 (MQ=255)
gACTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTcgc > 1:1147682/1‑100 (MQ=255)
cTATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTCGCGt > 1:816658/1‑100 (MQ=255)
tATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTCGCGta < 2:45422/100‑1 (MQ=255)
tATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTCGCGta < 2:501487/100‑1 (MQ=255)
tATCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTCGCGta < 1:1264323/100‑1 (MQ=255)
tCTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTCGCGtaat < 1:668898/100‑1 (MQ=255)
cTGGCACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTCGCGtaata > 1:184438/1‑100 (MQ=255)
gCACGAGACACTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTCGCGTAATAAAc < 2:855102/100‑1 (MQ=255)
cACGAGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTCGCGTAATAAAcc > 2:1266991/1‑100 (MQ=255)
|
GATGGGCTTTTCCTACTTTATTGCGCTCGGCGACAGCCTGGATATCGACGTTGATGAATTGCTTGACTATCTGGCACGCGACAGTAAAACCAGCGCCATCCTGCTCTATCTCGAACAGTTAAGCGACGCGCGACGCTTTGTTTCGGCGGCCCGTAGTGCCTCGCGTAATAAACC > NC_000913/2720465‑2720638
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
