Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F204 I1 R1
|
117 |
93.2 |
4682243 |
93.4% |
4373214 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,808,281 |
(A)5→4 |
coding (486/861 nt) |
yniA → |
fructosamine kinase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,808,277 | 0 | A | . | 95.1%
| 346.1
/ 10.6
| 81 | coding (482/861 nt) | yniA | fructosamine kinase family protein |
| Reads supporting (aligned to +/- strand): ref base A (1/3); new base . (38/39); total (39/42) |
| Fisher's exact test for biased strand distribution p-value = 6.17e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 |
TCTCCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGAAAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGCG > NC_000913/1808184‑1808372
|
tctcCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGAAAAggg < 2:2023892/100‑1 (MQ=255)
ctcCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGaaaaggga > 1:801487/1‑96 (MQ=255)
ctcCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGAAAAggga < 2:1800504/100‑2 (MQ=255)
ctcCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGAAAAggga > 2:1650238/1‑99 (MQ=255)
ccACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATc < 2:1667259/100‑1 (MQ=255)
ccACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATc > 1:25837/1‑100 (MQ=255)
acaACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGc < 1:1822117/100‑1 (MQ=255)
acaACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGc > 2:1979109/1‑100 (MQ=255)
caACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCt > 1:1753763/1‑100 (MQ=255)
aCTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCttt < 2:1151315/100‑1 (MQ=255)
ccACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCgg < 1:884390/100‑1 (MQ=255)
ccACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCgg > 1:2232450/1‑100 (MQ=255)
ccACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTATTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCgg > 2:1436906/1‑100 (MQ=255)
cacaGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGc < 2:764676/100‑1 (MQ=255)
tctccAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAat < 2:791715/97‑1 (MQ=255)
ccAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAataga > 1:791716/1‑98 (MQ=255)
cAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCg > 1:858852/1‑100 (MQ=255)
cAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATACCg > 2:2052806/1‑100 (MQ=255)
acacCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGAc < 2:1899103/100‑1 (MQ=255)
acacCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGAc < 2:2031499/100‑1 (MQ=255)
acCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGc < 1:323721/100‑1 (MQ=255)
tGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCAt > 2:1506191/1‑100 (MQ=255)
gCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCAtcg < 2:2323598/100‑1 (MQ=255)
cAACGTCGCTGGTCAACGTTTTTTTTTTTTTTTTGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCTTCGCCAtcg > 2:1132453/1‑99 (MQ=255)
cAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCAtcgt > 1:1776933/1‑100 (MQ=255)
aCGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCAtcgtcg < 2:858850/100‑1 (MQ=255)
tCGCTGGTTAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGa < 2:598360/98‑1 (MQ=255)
tCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGc < 1:2063671/100‑1 (MQ=255)
cGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCa < 2:801486/100‑1 (MQ=255)
cGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCa > 2:1160554/1‑100 (MQ=255)
cGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCa < 2:1776928/100‑1 (MQ=255)
cGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCa < 1:1107364/100‑1 (MQ=255)
ggTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATAtt < 1:776940/100‑1 (MQ=255)
aaCGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTcagc < 2:1753758/100‑1 (MQ=255)
aCGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTcagca > 1:276897/1‑100 (MQ=255)
cGTTTTTTGCTGAACAACGGATTGGCTGGCAGGTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTcagcag < 1:941763/100‑1 (MQ=255)
ttttttGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCg < 2:1372556/100‑1 (MQ=255)
gCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGc < 1:418153/100‑1 (MQ=255)
gCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGc < 1:1719725/100‑1 (MQ=255)
tGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCt > 1:1662254/1‑100 (MQ=255)
tGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCt > 1:1661864/1‑100 (MQ=255)
gAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTc < 2:1451787/100‑1 (MQ=255)
gAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTc < 1:1160556/100‑1 (MQ=255)
gAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAAGATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGccgc > 2:815904/1‑98 (MQ=255)
aacaacGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTca < 1:1399759/100‑1 (MQ=255)
aacaacGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTca < 1:1188723/100‑1 (MQ=255)
acaacGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTcac > 2:966689/1‑100 (MQ=255)
caacGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTcaca > 1:850099/1‑100 (MQ=255)
acGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATc > 1:410336/1‑100 (MQ=255)
acGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATc > 1:557815/1‑100 (MQ=255)
cGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATcc > 2:727210/1‑99 (MQ=255)
cGGATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCa > 1:1779206/1‑100 (MQ=255)
ggATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCaa > 2:652063/1‑100 (MQ=255)
gATTGGCTGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAAc < 1:815906/100‑1 (MQ=255)
gATTGGCAGGCAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAAc > 1:1230970/1‑100 (MQ=255)
ggctggcAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCa < 2:850097/100‑1 (MQ=255)
ggctggcAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCa > 2:601196/1‑100 (MQ=255)
gctggcAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAg > 2:211338/1‑100 (MQ=255)
ctggcAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGc > 1:153741/1‑100 (MQ=255)
tccgatctGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGcc < 1:1132974/93‑1 (MQ=255)
cAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGccagt > 1:1708365/1‑97 (MQ=255)
cAGTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTtc < 2:2232442/100‑1 (MQ=255)
gTTGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTtctc > 1:699599/1‑100 (MQ=255)
ttGGAACTGGCTGCAGAAAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTtctc < 2:1874370/100‑1 (MQ=255)
ttGGAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTctct < 1:1979116/100‑1 (MQ=255)
ggAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGccagatcgga > 2:1132972/1‑92 (MQ=255)
ggAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGt > 2:1221009/1‑100 (MQ=255)
ggAACTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGt < 2:153739/100‑1 (MQ=255)
gatctgCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTg < 2:1971120/95‑1 (MQ=255)
aaCTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTg < 1:601197/100‑1 (MQ=255)
aaCTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTg < 2:1662249/100‑1 (MQ=255)
aaCTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTg < 2:1661859/100‑1 (MQ=255)
cTGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCa > 2:1049671/1‑100 (MQ=255)
tGGCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCAc > 1:1795980/1‑100 (MQ=255)
tGGCTGCAG‑AAAAGGGAGCTCTTTCGGCAATATCTACGCCATCGTCTACCATATTCAGCAGCGTCTGGCCTCACCTCAACCGCAGCCTTCTCTGTTg < 2:283144/97‑1 (MQ=255)
gCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTgagatc > 1:1971127/1‑95 (MQ=255)
gCTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACgg > 1:722530/1‑100 (MQ=255)
cTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGc > 2:166260/1‑100 (MQ=255)
cTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGc < 1:1475233/100‑1 (MQ=255)
cTGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGc < 1:1436910/100‑1 (MQ=255)
tGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGCg > 2:333601/1‑100 (MQ=255)
tGCAG‑AAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGCg > 1:484349/1‑100 (MQ=255)
|
TCTCCACAACTCCACAGCCCAACACCTGGCAACGTCGCTGGTCAACGTTTTTTGCTGAACAACGGATTGGCTGGCAGTTGGAACTGGCTGCAGAAAAAGGGATCGCTTTCGGCAATATCGACGCCATCGTCGAGCATATTCAGCAGCGTCTGGCCTCACATCAACCGCAGCCTTCTCTGTTGCACGGCG > NC_000913/1808184‑1808372
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
