Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F50 I1 R1
|
163 |
55.0 |
1534755 |
98.6% |
1513268 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
649,250 |
C→T |
V108I (GTA→ATA) |
citF ← |
citrate lyase, citrate‑ACP transferase (alpha) subunit |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 649,250 | 0 | C | T | 100.0%
| 217.9
/ NA
| 57 | V108I (GTA→ATA) | citF | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/36); total (21/36) |
CGCCGCTCTGTACCAGATGCACACGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTACCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACGGAAAGCGTGATGGAAGGAAACCGT > NC_000913/649103‑649382
|
cgccgcTCTGTACCAGATGCACACGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCa < 1:699450/150‑1 (MQ=255)
cgccgcTCGGTCCCAGAGGCACACGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCa < 2:361108/150‑1 (MQ=255)
ccgcTCTGTCCCAGAGGCACACGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAgc < 2:318361/150‑1 (MQ=255)
ccgcTCTGTACCAGATGCACACGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAgcg > 1:429877/1‑151 (MQ=255)
ccgcTCTGTACCAGATGCACACGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAg < 2:694248/149‑1 (MQ=255)
ctctGTACCAGATGCACACGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAgcggcg > 1:243373/1‑151 (MQ=255)
ctctGTACCAGATGCACACGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAgcggc < 1:736776/150‑1 (MQ=255)
agccaccatccccccgTGATGGTGGATCTGCACCGGTTCCGCCAGCAGGCCACGGGGGATCTCTACCGGCAGTGGACCACGCAGGCCGGACGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCa < 2:83994/134‑1 (MQ=255)
aTGCACACGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATc < 1:439495/150‑1 (MQ=255)
cacaCGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTc < 1:122572/151‑1 (MQ=255)
cacGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCa < 1:10653/150‑1 (MQ=255)
acGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAgg > 1:80124/1‑151 (MQ=255)
gACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCa < 1:232532/147‑1 (MQ=255)
gACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAggg > 2:222463/1‑150 (MQ=255)
gagTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGcc > 1:495766/1‑150 (MQ=255)
gagTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCa < 2:235226/151‑1 (MQ=255)
agTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGcc > 2:375876/1‑149 (MQ=255)
gTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAgg < 2:590657/151‑1 (MQ=255)
gTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAgg < 1:696187/151‑1 (MQ=255)
ggATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAggg < 2:92426/150‑1 (MQ=255)
gCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGt < 1:544810/150‑1 (MQ=255)
cACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGttt < 2:665151/151‑1 (MQ=255)
ccAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCAt > 2:179531/1‑151 (MQ=255)
cagcagACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATc > 2:287271/1‑151 (MQ=255)
gcagACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCtt < 1:445636/151‑1 (MQ=255)
gcagACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCtt < 1:335503/151‑1 (MQ=255)
cagACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTc < 2:369869/151‑1 (MQ=255)
cagACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTc < 1:295705/151‑1 (MQ=255)
cagACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTc < 1:135836/151‑1 (MQ=255)
agACCACGGGAGATCTCGTCCGCCAGTGGAGAACGAAGGACGGAGGTATAAATGCGGGTAACCACGGCCTGGCGAATGGGTTCTATCAGCGGCGCATGGAAATTACTCAGGGAGGTGGACGCCAGGGTCAGGTTTTTAAAGTCCATCTTcg > 2:144738/1‑151 (MQ=255)
ccACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTcgcg > 1:520122/1‑150 (MQ=255)
ccACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTcgcg < 2:303432/150‑1 (MQ=255)
aCGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATg > 2:111211/1‑151 (MQ=255)
cGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGa < 1:486870/151‑1 (MQ=255)
gggAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGAc < 1:35755/151‑1 (MQ=255)
tCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCAcc > 1:116106/1‑150 (MQ=255)
gTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGAc < 2:722862/151‑1 (MQ=255)
ccACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACggtc > 2:11852/1‑150 (MQ=255)
cAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACggtcaggtca < 2:267670/151‑1 (MQ=255)
cAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACggtcaggtca < 1:65705/151‑1 (MQ=255)
aGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCAc > 2:205832/1‑151 (MQ=255)
ggCCGGAGGTATAAATGCGGGTAACCACGCCCTGCCGCATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTACATCACCATATTGACGGTCAGGTCAcc > 2:49676/1‑151 (MQ=255)
ccGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGc < 1:484927/151‑1 (MQ=255)
cGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGcc > 2:262618/1‑151 (MQ=255)
ggAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCa < 1:11984/151‑1 (MQ=255)
gAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCAc > 2:657532/1‑151 (MQ=255)
ggTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACgg < 2:310801/151‑1 (MQ=255)
ggTATAAAGGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGTTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACg < 1:414272/150‑1 (MQ=255)
aaacgggggTAACCACGCCCTGGCGAAGGTGTTCTATAAGCGGCGTATGGCAATCACTCAGGGAGCGGGACGCCTGGGTCAGGTTTTTAAGGCCCATCTCCGCGAGGACCTCCATCACCATATTGACGGTCAGGTCACCGCCACGGAAAGc < 2:69822/145‑1 (MQ=255)
aaaTGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATAGTGACGGTCAGGTCACCGCCACGGAAAGc > 1:207111/1‑151 (MQ=255)
aTGCGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACGGAAAGCGt < 1:428226/151‑1 (MQ=255)
cGGGTAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACGGAAAGCGTGAt < 1:573833/151‑1 (MQ=255)
gggTATCCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTCCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACGGAAAGCGTGAt < 2:185959/150‑1 (MQ=255)
tAACCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACGGAAAGCGTGATgga > 2:468962/1‑150 (MQ=255)
aCCACGCCCTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACGGAAAGCGTGATggaagg < 1:364723/151‑1 (MQ=255)
cccTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACGGAAAGCGTGATGGAAGGAAACCg > 2:714515/1‑151 (MQ=255)
ccTGGCGAATGTGTTCTATCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACGGAAAGCGTGATGGAAGGAAACCGt > 2:42976/1‑151 (MQ=255)
|
CGCCGCTCTGTACCAGATGCACACGACCGCCGTGAGAGTGGATCTGCACCGGTTCTGCCAGCAGACCACGGGAGATCTCTTCCGCCAGTGGACCACGCAGGCCGGAGGTATAAATGCGGGTAACCACGCCCTGGCGAATGTGTTCTACCAGCGGCGCATGGCAATCACTCAGGGAGCTGGACGCCAGGGTCAGGTTTTTAAAGCCCATCTTCGCGATGACGTCCATCACCATATTGACGGTCAGGTCACCGCCACGGAAAGCGTGATGGAAGGAAACCGT > NC_000913/649103‑649382
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A