Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F50 I1 R1
|
163 |
55.0 |
1534755 |
98.6% |
1513268 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,514,041 |
A→G |
T71A (ACG→GCG) |
ydcU → |
putative ABC transporter permease |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,514,041 | 0 | A | G | 100.0%
| 201.5
/ NA
| 58 | T71A (ACG→GCG) | ydcU | putative ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (25/33); total (25/33) |
GGCATAATCCGGGGCTGGGGCTGTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGACGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGGCGCGCTATACCAGCGGGAAA > NC_000913/1513895‑1514187
|
ggCATAATCCGGGGCTGGGGCTGTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCg < 1:172675/149‑1 (MQ=255)
gCATAATCCGGGGCTGGGGCTGTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTTTACTTTTGACGATTTCACCATGTCGGGAACGCCGGAACTGGCGCTg > 1:412925/1‑151 (MQ=255)
aTCCGGGGCTGGGGCTGTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGa > 1:158936/1‑150 (MQ=255)
tggggctgTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGCTTTTTTACTTTTGACGGTTTTCCCCTTTCGGTAACGCCGGAAGTGGCGCTGGCGGATATCCGt > 2:48376/1‑149 (MQ=255)
ctgTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCt > 2:670790/1‑149 (MQ=255)
ctgTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGATGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCt < 2:366156/149‑1 (MQ=255)
tttttACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGttt > 1:39664/1‑150 (MQ=255)
tttACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTaa < 1:225420/150‑1 (MQ=255)
aCTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTAGTTCGGCTCGCTGCTGACACTGTTATGGCAGGGGATTTATAATTTTTACGATTTCACCATGTCTGTAACGCCGGAAAATGGGCTGGGCGATAGCCGTGCGCAGTTTaa > 2:556171/1‑147 (MQ=255)
gctTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGa < 1:170457/149‑1 (MQ=255)
gctTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAAt < 1:430454/151‑1 (MQ=255)
gctTGGCCCGCTAAATGGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATTCTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAAt < 2:141096/151‑1 (MQ=255)
ttGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAAtt > 1:399460/1‑150 (MQ=255)
cGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGAcat < 1:207903/151‑1 (MQ=255)
cTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGAcatc > 1:417764/1‑150 (MQ=255)
tgtgGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTTATCCGGCGAATTACGAcatcct > 2:389305/1‑146 (MQ=255)
gtgGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATtct < 1:673367/150‑1 (MQ=255)
ggTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGATGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTcc > 2:177435/1‑150 (MQ=255)
tGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGGTTTTATACTTTTGACGATTTCACCATGTCGGTAAAGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCAc > 2:643343/1‑150 (MQ=255)
tGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTGCGCAc < 1:607403/150‑1 (MQ=255)
aTTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGa < 2:131871/151‑1 (MQ=255)
gTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATtct < 1:315472/137‑1 (MQ=255)
gTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATtct > 2:315459/1‑137 (MQ=255)
gTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACt < 2:210348/150‑1 (MQ=255)
cTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTAt > 1:72753/1‑150 (MQ=255)
aTTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATgg < 2:96695/150‑1 (MQ=255)
aTTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGc < 1:496334/151‑1 (MQ=255)
aTTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAAATACGACATCATTCTCCGCACGCTGACTTTgg > 2:19300/1‑150 (MQ=255)
tttCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCCTGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCt > 1:392777/1‑151 (MQ=255)
ggCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTgg < 1:515414/151‑1 (MQ=255)
gCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGc < 1:566857/151‑1 (MQ=255)
gctgctGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTc > 1:435138/1‑151 (MQ=255)
gctgACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCAc < 1:223791/150‑1 (MQ=255)
gctgACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCAc > 1:5757/1‑150 (MQ=255)
gACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTAt < 2:40500/150‑1 (MQ=255)
gTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCa < 2:321107/149‑1 (MQ=255)
ggCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCa < 2:51050/150‑1 (MQ=255)
gCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCAtt < 1:310119/151‑1 (MQ=255)
gATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGc > 1:122425/1‑151 (MQ=255)
tttATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCtt < 2:631417/150‑1 (MQ=255)
ataCTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTcc > 2:669385/1‑151 (MQ=255)
taCTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTcc > 2:598276/1‑150 (MQ=255)
aCTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCa > 1:533309/1‑150 (MQ=255)
ttGACGATTTCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATgg < 1:301417/150‑1 (MQ=255)
ttCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGtat < 2:656445/150‑1 (MQ=255)
tCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTatat > 1:46514/1‑151 (MQ=255)
tCACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTatat > 1:371293/1‑151 (MQ=255)
cACCATGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTatat < 2:660319/150‑1 (MQ=255)
tGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGgcgcg > 2:40445/1‑151 (MQ=255)
tGTCGGTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGgcgc < 2:287641/150‑1 (MQ=255)
gTAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGGCGCGCtata < 1:375698/151‑1 (MQ=255)
tAACGCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGGCGCGCTATAc > 2:300693/1‑151 (MQ=255)
gCCGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGGCGCGCTATACCAGc < 2:254822/151‑1 (MQ=255)
cGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGGCGCGCTATACCAGCgg < 1:605885/151‑1 (MQ=255)
cGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGGCGCGCTATACCAGCgg < 2:634586/151‑1 (MQ=255)
cGGAACTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGGCGCGCTATACCAGCgg < 1:55085/151‑1 (MQ=255)
aCTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGGCGCGCTATACCAGCGGGaaa < 1:643382/151‑1 (MQ=255)
aCTGGCGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGGATATGGCGCGCTATACCAGCGGGa < 2:670679/149‑1 (MQ=255)
|
GGCATAATCCGGGGCTGGGGCTGTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGACGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGACATCATTCTCCGCACGCTGACTATGGCTGTGGCAGTCACTATCGCCAGCGCCATTCTGGCTTTTCCAATGGCGTGGTATATGGCGCGCTATACCAGCGGGAAA > NC_000913/1513895‑1514187
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A