Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 678,690 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583678,6900GC99.4% 795.3 / NA 330intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (168/160);  minor base A (2/0);  total (170/160)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583678,6910CG100.0% 779.8 / NA 330intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (170/160);  total (170/160)
*CP042583678,6920TA99.4% 780.9 / NA 330intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base A (169/159);  total (170/160)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 330 total aligned reads displayed.

CGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCGCTGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTGAACCGCCTCACGCGTTGCGGG  >  CP042583/678410‑678971
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
cGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATc                                                                                                                                                                                                                                                                                   <  1:744032/289‑1 (MQ=255)
          ccTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTgg                                                                                                                                                                                                                                                                          >  1:1061713/1‑288 (MQ=255)
           ttGATGGGCTAGACTTATCAGACCTACATTTTCGCCGCAATATATTGAATTTGCACGGTTTGTAGGCCGGATAAAGCGTTCACGCCGCATCCTGCCTAATCAACGCGCACTTTGTCTTCAATCGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGcc                                                                                                                                                                                                                                                                        <  2:258154/288‑1 (MQ=255)
             gATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCcg                                                                                                                                                                                                                                                                      >  1:915879/1‑289 (MQ=255)
             gATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGCAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACACACCGCCCTTTCACCCCCGAGACATCCCCTTTTGcccc                                                                                                                                                                                                                                                                       >  2:1656188/1‑288 (MQ=38)
                      cGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGAcc                                                                                                                                                                                                                                                             <  1:932746/289‑1 (MQ=255)
                           aTCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATc                                                                                                                                                                                                                                                        >  1:2086983/1‑289 (MQ=255)
                           aTCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAAAAACTGGCGGTCATGACGATACGTAATATCGCTGGCCTTCAGTACCTACTAGATCACAATCCGCACTTTCACAGCAGACACACCCACTTTTTGCCCGCCGCTCACCTCAt                                                                                                                                                                                                                                                         >  2:1894982/1‑288 (MQ=38)
                                gCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGcc                                                                                                                                                                                                                                                                        <  2:1817588/268‑1 (MQ=255)
                                gCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCAt                                                                                                                                                                                                                                                         >  1:1624070/1‑283 (MQ=255)
                                gCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATg                                                                                                                                                                                                                                                    >  1:1920358/1‑288 (MQ=255)
                                gCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATg                                                                                                                                                                                                                                                    >  1:636715/1‑288 (MQ=255)
                                gCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATg                                                                                                                                                                                                                                                    >  1:211226/1‑288 (MQ=255)
                                 ccTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATg                                                                                                                                                                                                                                                    <  1:1603521/287‑1 (MQ=255)
                                  cTACATTTTTTCCGCAATATATTGAACTTGGGCGGTTTGGAGGCCGGATAAGGGGTTCACGCCCCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGAc                                                                                                                                                                                                                                                  <  2:1523500/288‑1 (MQ=255)
                                      aTTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             <  1:1223128/289‑1 (MQ=255)
                                      aTTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             <  1:531874/289‑1 (MQ=255)
                                      aTTTTCTCCGCAAGAGATGGAATTGGGGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             <  2:1486626/289‑1 (MQ=255)
                                      aTTTTCTCCGAAATATATTGAATGTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             <  2:1803509/289‑1 (MQ=255)
                                           ctcCGCAATTTATGGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCa                                                                                                                                                                                                                                        <  2:915879/289‑1 (MQ=255)
                                              cGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACa                                                                                                                                                                                                                                     <  1:503621/289‑1 (MQ=255)
                                                aaaTTTATTGAAGTCGCGCGGTTTGGAGGCCGGATAAGGCGTTCACGCAGAATCCGGCATAAACAACGCGAACTTTGTCTTCAATAGGAAGCCGGAATTTTACTTCGGATTTCCGTTAACCTAAAGCCGGTAACGCCTTTGCCAGAGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATAGCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATa                                                                                                                                                                                                                                   <  2:1696004/288‑1 (MQ=255)
                                                      atTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCt                                                                                                                                                                                                                              >  1:1275007/1‑288 (MQ=255)
                                                              tGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAAtt                                                                                                                                                                                                                      >  1:1755883/1‑288 (MQ=255)
                                                                          aGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAgcttgctt                                                                                                                                                                                                          >  1:2189581/1‑288 (MQ=255)
                                                                               ggATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACTCCCTGTATCACACTCCGCTCTTTCACCGTCGTGCCACCCACTTTTGGCCCGACGATCACCGCCTTCATGCCCTTTGTACCACACTACTCCTCCATAATTTTCAGCTTGCTTccctg                                                                                                                                                                                                     >  2:295311/1‑286 (MQ=255)
                                                                               ggATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             <  2:1874029/248‑1 (MQ=255)
                                                                               ggATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCa                                                                                                                                                                                                      >  2:2119125/1‑287 (MQ=255)
                                                                               ggATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCa                                                                                                                                                                                                      >  1:868224/1‑287 (MQ=255)
                                                                               ggATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCa                                                                                                                                                                                                      >  2:707877/1‑287 (MQ=255)
                                                                               ggATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTACGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             >  1:1874029/1‑248 (MQ=255)
                                                                                 aTAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCt                                                                                                                                                                                                   >  2:613595/1‑288 (MQ=255)
                                                                                           cACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             <  2:1178085/236‑1 (MQ=255)
                                                                                           cACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             >  1:1178085/1‑236 (MQ=255)
                                                                                           cACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACACCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACAAACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGca                                                                                                                                                                                        >  1:1339991/1‑288 (MQ=255)
                                                                                            aCGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCg                                                                                                                                                                                       <  1:707877/289‑1 (MQ=255)
                                                                                                 gcATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGt                                                                                                                                                                                  >  1:2068116/1‑289 (MQ=255)
                                                                                                   aTCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             <  1:1484045/228‑1 (MQ=255)
                                                                                                           tAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAaactcaact                                                                                                                                                                        <  2:211226/289‑1 (MQ=255)
                                                                                                             aacaacGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAactcaactca                                                                                                                                                                      <  2:1103124/289‑1 (MQ=255)
                                                                                                                         tttGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTg                                                                                                                                                          <  2:1275007/289‑1 (MQ=255)
                                                                                                                          ttGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAAt                                                                                                                                                                                                                       <  1:677470/227‑1 (MQ=255)
                                                                                                                             tCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGa                                                                                                                                                      >  1:1456269/1‑289 (MQ=255)
                                                                                                                                 cAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGAtata                                                                                                                                                  >  1:1094445/1‑289 (MQ=255)
                                                                                                                                       gAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCa                                                                                                                                             >  2:1713461/1‑288 (MQ=255)
                                                                                                                                       gAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGAACTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAATTTAGCCGCAGCTAAACTCAACTCACGCCCCACCTTTCCCATATAACCCa                                                                                                                                             >  2:2225928/1‑288 (MQ=255)
                                                                                                                                        aaGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCAt                                                                                                                                            <  1:551529/288‑1 (MQ=255)
                                                                                                                                         aGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCg                                                                                                                                          >  1:43277/1‑289 (MQ=255)
                                                                                                                                          gCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAACTAGCCGCAGGTACACTCAACTCCCGCCCCAGATTGCCGGTATAAACCATCg                                                                                                                                          >  2:732837/1‑288 (MQ=255)
                                                                                                                                                    tCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTg                                                                                                                               <  2:1061713/289‑1 (MQ=255)
                                                                                                                                                     ccTTCGGATTTCCGTTAACCTAAAGCCTTTACCGCCTTTTCCAGCGCCTTATGTACAAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTgc                                                                                                                              <  2:2154001/289‑1 (MQ=255)
                                                                                                                                                     ccTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTgc                                                                                                                              <  1:2166650/289‑1 (MQ=255)
                                                                                                                                                                ccGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGGTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGcc                                                                                                                   <  2:43277/289‑1 (MQ=255)
                                                                                                                                                                   ttAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTgg                                                                                                                >  1:2213083/1‑289 (MQ=255)
                                                                                                                                                                       ccTAAAGCCTGTAAAGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGa                                                                                                            <  2:1622031/289‑1 (MQ=255)
                                                                                                                                                                           aaGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACAATCGGCGCTGGCGTGCGGCGTAATCCCCGGGCGAttt                                                                                                         >  2:644724/1‑288 (MQ=255)
                                                                                                                                                                                tGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTg                                                                                                                                                          <  2:1353561/234‑1 (MQ=255)
                                                                                                                                                                                tGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGc                                                                                                                                                         >  2:483374/1‑235 (MQ=255)
                                                                                                                                                                                        cTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGa                                                                                           >  2:1846251/1‑289 (MQ=255)
                                                                                                                                                                                          tttCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAAt                                                                                         >  1:347518/1‑289 (MQ=255)
                                                                                                                                                                                          tttCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAAt                                                                                         <  1:1816334/289‑1 (MQ=255)
                                                                                                                                                                                           ttCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAAtt                                                                                        >  1:40541/1‑289 (MQ=255)
                                                                                                                                                                                                 cgcgTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAAGTGGCATc                                                                                  >  1:2011766/1‑289 (MQ=255)
                                                                                                                                                                                                    gTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGATCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAg                                                                                <  1:1515553/288‑1 (MQ=255)
                                                                                                                                                                                                             caacTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAAtt                                                                                                                                                                                            <  2:1976394/171‑1 (MQ=255)
                                                                                                                                                                                                               acTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATaaaa                                                                    <  2:1456269/289‑1 (MQ=255)
                                                                                                                                                                                                                cTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCGCCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATaaaa                                                                    >  1:1069311/1‑288 (MQ=255)
                                                                                                                                                                                                                cTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATaaaa                                                                    >  1:1657236/1‑288 (MQ=255)
                                                                                                                                                                                                                  ggCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGc                                                                                                                                                                                         <  1:230515/169‑1 (MQ=255)
                                                                                                                                                                                                                  ggCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTcagcag                                                                                               >  1:2119641/1‑259 (MQ=255)
                                                                                                                                                                                                                  ggCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATaaaa                                                                    >  2:580967/1‑286 (MQ=255)
                                                                                                                                                                                                                   gCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCCCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATCACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCCAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCGGGCGTGCGGCGTAAAGCCAGGCCGATTTCCTTCAGCAGCAGAATTTGCTACAGGCCGGTATAAAAACt                                                                 >  2:2029276/1‑288 (MQ=255)
                                                                                                                                                                                                                     ggTCATGACGATACGTAATATCGCTGGCCTCCAGTACCTCCTGGATCACGATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGcc                                                              <  1:1894982/289‑1 (MQ=255)
                                                                                                                                                                                                                     ggTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAGCATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGcc                                                              <  1:456274/289‑1 (MQ=255)
                                                                                                                                                                                                                       tCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTTGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCa                                                             <  2:936111/288‑1 (MQ=255)
                                                                                                                                                                                                                        caggACGGTACGGAATATCCCTGGCCTCCCGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAgg                                                           <  2:2068116/286‑1 (MQ=255)
                                                                                                                                                                                                                                 aCGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGc                                                                                                                                                                                                                                                                         <  2:773626/74‑1 (MQ=255)
                                                                                                                                                                                                                                 aCGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAgg                                                                               >  2:459167/1‑260 (MQ=255)
                                                                                                                                                                                                                                   ggAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAatga                                                <  1:473520/289‑1 (MQ=255)
                                                                                                                                                                                                                                     aaTATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAatgat                                               <  1:184031/288‑1 (MQ=255)
                                                                                                                                                                                                                                         tCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATgaga                                           >  1:155819/1‑288 (MQ=255)
                                                                                                                                                                                                                                          cGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATc                                         <  1:1670733/289‑1 (MQ=255)
                                                                                                                                                                                                                                           gCTGGCCTCCAGTACCTCCTTGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATcc                                        <  2:2213083/289‑1 (MQ=255)
                                                                                                                                                                                                                                           gCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATcc                                        <  1:613595/289‑1 (MQ=255)
                                                                                                                                                                                                                                               gCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGc                                      >  2:340335/1‑287 (MQ=255)
                                                                                                                                                                                                                                                  tCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTAGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGAGATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCaata                                                    <  1:1419558/270‑1 (MQ=255)
                                                                                                                                                                                                                                                        aCCTCCTGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGa                              <  1:1846723/286‑1 (MQ=255)
                                                                                                                                                                                                                                                            cctGGATCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTg                       >  1:781632/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 aTCACAATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAACAATGATGAGATCCGTTTCATTGATAGCGTGAAcc                   >  1:99564/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                     caATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             >  2:963647/1‑66 (MQ=255)
                                                                                                                                                                                                                                                                     caATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCtttt                                                                                                                                                                                                                                             <  1:963647/66‑1 (MQ=255)
                                                                                                                                                                                                                                                                     caATCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCGGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTg                               <  2:2180478/272‑1 (MQ=255)
                                                                                                                                                                                                                                                                       aTCCGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTGAACCGCCTCAc            >  1:2046210/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          cGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTTCTTTTCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTGAACCGCCTCAcgcg         <  2:1193478/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                          cGCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTGAACCGcccccagct         >  2:2010626/1‑282 (MQ=255)
                                                                                                                                                                                                                                                                           gCTCTTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTGAACCGCCTCACGCGt        <  1:1699717/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                            ctctTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTGAACCGCCTCACGCGtt       >  1:320518/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            ctctTTCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTGAACCGCCTCACGCGt        >  2:156843/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                 tCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTGAACCGCCTCACGCGTTGCggg  <  2:545568/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 tCACCGCCGAGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTGAACCGCCTCACGCGTTGCggg  <  1:295311/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
CGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGCGCACTTTGTCTTCAATAGGAAGCCGGAATTTTCCTTCGGATTTCCGTTAACCTAAAGCCTGTAACGCCTTTTCCAGCGCGTTATGTAACAACTGGCGGTCATGACGATACGGAATATCGCTGGCCTCCAGTACCTCCTGGATCACAATCCGCTCTTTCACCGCGCTGACATCCACTTTTGGCCCGACGATGACCGCATCAATGACCTTTTTACCAACATACTGCTCCATAATTGCCAGCTTGCTTTCCAGCTTCAAATTAGCCGCAGGTAAACTCAACTCACGCCCCAGATTGCCGATATAAACCATCGGCGCTGGCGTGCGGCGTAATGCCTGGGCGATTTCCTTCAGCAGCAGAATTGGCATCAGGCTGGTATAAAAACTGCCAGGCCCAATAATGATGAGATCCGCTTCATTGATAGCGTGAACCGCCTCACGCGTTGCGGG  >  CP042583/678410‑678971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A