Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,812,547 6 bp→CGATGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,812,5470GC99.3% 675.7 / NA 284intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base C (140/142);  total (140/144)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,812,5480CG99.3% 666.7 / ‑5.7 284intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (139/142);  minor base A (0/2);  total (140/144)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,812,5490TA99.3% 671.8 / NA 284intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/2);  new base A (140/142);  total (140/144)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,812,5500AT99.3% 670.7 / NA 284intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (2/0);  new base T (138/142);  total (140/144)
Fisher's exact test for biased strand distribution p-value = 2.46e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,812,5510CG100.0% 670.2 / NA 284intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (140/144);  total (140/144)
*CP0425831,812,5520TA100.0% 681.6 / NA 284intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (140/144);  total (140/144)

Only 100 of 284 total aligned reads displayed.

AGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACGCTACTCTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATC  >  CP042583/1812281‑1812820
                                                                                                                                                                                                                                                                           ||||||                                                                                                                                                                                                                                                                            
aGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATAtt                                                                                                                                                                                                                                                               >  2:964729/1‑287 (MQ=255)
   gTGGTAATGAACGTCGTCACGTTGGGATAAGCGATAATAAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACtt                                                                                                                                                                                                                                                           <  2:1999999/288‑1 (MQ=255)
          tGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGCCGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTCCCACACCGAGCGCGATAATAATACGC‑ACCTAAGACAGGGTGAGAAAAATACTTACGTTCat                                                                                                                                                                                                                                                   >  2:723587/1‑288 (MQ=255)
           gAACGGCGGACCGTTGAGAAAATCGATAATCAGACCATTACTCAAACCAATCACCGCACCAAGAGCACAGACAATCAGAATATCCAGGGCAATCGGGATCGTCGCCATTTCCGGGAACCCTTTGTTGGCGTTATCCATGGACTGCAAGAAGGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAAc                                                                                                                                                                                                                                                  <  2:1236696/289‑1 (MQ=255)
             aCGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAg                                                                                                                                                                                                                                                <  1:710282/289‑1 (MQ=255)
                 cGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAg                                                                                                                                                                                                                                                        <  1:2593771/277‑1 (MQ=255)
                 cGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAg                                                                                                                                                                                                                                                        >  2:2593771/1‑277 (MQ=255)
                 cGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACtt                                                                                                                                                                                                                                            >  1:2529879/1‑289 (MQ=255)
                 cGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACtt                                                                                                                                                                                                                                            >  1:2342443/1‑289 (MQ=255)
                   tCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGAAGACTGGGTGAGACTCTTACTTAAGTTAAACaacattaa                                                                                                                                                                                                                                          >  2:1576663/1‑282 (MQ=255)
                          gagaTAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGtt                                                                                                                                                                                                                                   <  1:954263/289‑1 (MQ=255)
                          gagaTAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGtt                                                                                                                                                                                                                                   <  1:2163239/289‑1 (MQ=255)
                                     tAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGaa                                                                                                                                                                                                                        >  1:574621/1‑289 (MQ=255)
                                            aCCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGAACAGCAGAAAGATCGGTCACCTGGGTGACAATTAACCCTGCCACACCGAGCGCGAGAATAATACGC‑ACCGATGACTGGGTGAGAATATTa                                                                                                                                                                                                                                                              >  1:2637786/1‑244 (MQ=255)
                                                ttGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCAGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATc                                                                                                                                                                                                              >  1:2096844/1‑288 (MQ=255)
                                                ttGACCAAACCGATCACCTCACCGATGGCACAGACAATCAGACTAAACAGCGCAATCGGCCTCGTCACCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCACCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTTACAATTAACCCTGCAACACCAAGGGCGATAATAATACGA‑ACCGATGACTGGGTGAGAATCTTAATTACGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAtataataaac                                                                                                                                                                                                              >  2:1625647/1‑286 (MQ=255)
                                                 tGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTcc                                                                                                                                                                                                                             >  2:495718/1‑272 (MQ=255)
                                                             tCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATAATACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAAATGACAGCAAAACTaa                                                                                                                                                                                                >  2:134132/1‑289 (MQ=255)
                                                                 cgacccAATGGCCCAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGa                                                                                                                                                                                            <  2:1138818/285‑1 (MQ=255)
                                                                   cACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACCCTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAac                                                                                                                                                                                          <  1:134132/289‑1 (MQ=255)
                                                                   cACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAac                                                                                                                                                                                          <  1:1625647/289‑1 (MQ=255)
                                                                           gCACAGACAATCAGAATAACCAGCGCAATTGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTaaa                                                                                                                                                                                  >  1:2236940/1‑289 (MQ=255)
                                                                              caGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATa                                                                                                                                                                                >  1:787013/1‑288 (MQ=255)
                                                                                 aCAATCAGAATAACCAGCGCAATTGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGc                                                                                                                                                                            <  2:2236940/289‑1 (MQ=255)
                                                                                  cAATCAAAATAACCAGCGCCAGCGGCATCGTCGCCAGTTCCGGGAAAACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCATCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGcc                                                                                                                                                                           <  2:2096844/289‑1 (MQ=255)
                                                                                  aaaTCATAATAACCAAGCCAATCGGCCACGTCTCCATATCCGGCAACACGTTGTCGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACATGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTGCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGcc                                                                                                                                                                           <  2:707412/288‑1 (MQ=255)
                                                                                   aaTCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGccc                                                                                                                                                                          <  1:265666/289‑1 (MQ=255)
                                                                                         aaTAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTc                                                                                                                                                                    >  2:2050034/1‑289 (MQ=255)
                                                                                             aCCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAg                                                                                                                                                                                                                                                <  1:685169/209‑1 (MQ=255)
                                                                                              ccAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGgta                                                                                                                                                               <  1:1035757/289‑1 (MQ=255)
                                                                                                   gcAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAata                                                                                                                                                                                                                                                                 <  1:274367/186‑1 (MQ=255)
                                                                                                   gcAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTCAAAGAACGACGTAAATACCGCCCTCTTTCAGgtaagtaa                                                                                                                                                          >  1:1611480/1‑289 (MQ=255)
                                                                                                   gcAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGcc                                                                                                                                                                           >  1:45161/1‑272 (MQ=255)
                                                                                                   gcAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGAAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATa                                                                                                                                                                                >  1:3104703/1‑267 (MQ=255)
                                                                                                       tCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGaaa                                                                                                                                                      >  1:1955744/1‑289 (MQ=255)
                                                                                                               gtcgCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGgta                                                                                                                                                               >  1:1463497/1‑272 (MQ=255)
                                                                                                                  gCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTAt                                                                                                                                           <  2:2316543/289‑1 (MQ=255)
                                                                                                                        tCCGGGAACTCTTTGTTGGCGTTATCCATGGACTGCCATCATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     <  2:1941292/289‑1 (MQ=255)
                                                                                                                        tCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTGAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     <  1:52311/289‑1 (MQ=255)
                                                                                                                        tCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     <  2:2758466/289‑1 (MQ=255)
                                                                                                                        tCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     <  1:1735795/289‑1 (MQ=255)
                                                                                                                        tCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     <  2:3072894/289‑1 (MQ=255)
                                                                                                                        tCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     <  2:2342443/289‑1 (MQ=255)
                                                                                                                          cGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCa                                                                                                                                   <  2:137868/289‑1 (MQ=255)
                                                                                                                                        tgGCGTGATCCATGGCCTGCAATAACGTCGCACCCACCCCAGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGGCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGccc                                                                                                                     <  2:2543045/289‑1 (MQ=255)
                                                                                                                                               aTCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     >  2:1609135/1‑266 (MQ=255)
                                                                                                                                                     ggACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAgg                                                                                                        <  1:1576663/289‑1 (MQ=255)
                                                                                                                                                         tGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAg                                                                                                                                                                                                                                                <  1:409005/149‑1 (MQ=255)
                                                                                                                                                          gCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATggg                                                                                                                           >  1:1385658/1‑265 (MQ=255)
                                                                                                                                                          gCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCaa                                                                                                   >  1:1281089/1‑289 (MQ=255)
                                                                                                                                                           cAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGa                                                                                                                                                                                            <  1:3172868/199‑1 (MQ=255)
                                                                                                                                                           cAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGa                                                                                                                                                                                            >  2:3172868/1‑199 (MQ=255)
                                                                                                                                                           cAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     <  2:1308575/254‑1 (MQ=255)
                                                                                                                                                                 tGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGc                                                                                                                                                                                                        <  1:596748/181‑1 (MQ=255)
                                                                                                                                                                 tGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAaagacgca                                                                                            >  1:329472/1‑289 (MQ=255)
                                                                                                                                                                   tCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTg                                                                                                                                                                                                                           <  1:982298/160‑1 (MQ=255)
                                                                                                                                                                   tCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGa                                                                                                                          >  2:773336/1‑257 (MQ=255)
                                                                                                                                                                   tCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAAGTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCGGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAATAAAACTTTTCTTATTTAACGCAACCATGGGAAGCCCCTAATCTTAAAGGTGCaaatccccaag                                                                                          >  2:2292135/1‑281 (MQ=255)
                                                                                                                                                                     gCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     <  1:2299931/244‑1 (MQ=255)
                                                                                                                                                                     gCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAaagacgcaagac                                                                                        >  1:2050892/1‑289 (MQ=255)
                                                                                                                                                                          caccacTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAagacgcaagacgca                                                                                     <  1:854662/287‑1 (MQ=255)
                                                                                                                                                                           accacTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTaaa                                                                                                                                                                                                                                         <  1:2908430/138‑1 (MQ=255)
                                                                                                                                                                                   cgccAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAac                                                                                                                                                                                          >  1:718704/1‑177 (MQ=255)
                                                                                                                                                                                    gccAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGccc                                                                                                                                                                          >  2:2911329/1‑192 (MQ=255)
                                                                                                                                                                                          ccTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCgt                                                                     <  1:1128357/287‑1 (MQ=255)
                                                                                                                                                                                                  acgacCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAac                                                                                                                                                                                          <  1:2998252/162‑1 (MQ=255)
                                                                                                                                                                                                  acgacCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     >  2:214398/1‑215 (MQ=255)
                                                                                                                                                                                                   cgacCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCt                                                                                                                   <  1:264311/232‑1 (MQ=255)
                                                                                                                                                                                                   cgacCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCt                                                                                                                   >  2:264311/1‑232 (MQ=255)
                                                                                                                                                                                                      ccAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTAc                                                                                                                                                                                                                                                             >  2:410965/1‑91 (MQ=255)
                                                                                                                                                                                                        agcagAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTACTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCg                                                     >  1:2427848/1‑289 (MQ=255)
                                                                                                                                                                                                         gcagAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGa                                                    >  2:81995/1‑289 (MQ=255)
                                                                                                                                                                                                           agAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCAACCCGGGCACGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGGCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGa                                                    <  2:2504707/287‑1 (MQ=255)
                                                                                                                                                                                                                    ggTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGc                                                                                                                                                                            <  1:355580/158‑1 (MQ=255)
                                                                                                                                                                                                                    ggTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGc                                                                                                                                                                            >  2:355580/1‑158 (MQ=255)
                                                                                                                                                                                                                                gACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCAtt                              >  2:2948749/1‑288 (MQ=255)
                                                                                                                                                                                                                                   aaTTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTc                          <  1:2487100/289‑1 (MQ=255)
                                                                                                                                                                                                                                       aaCCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCgt                                                                     <  1:34651/242‑1 (MQ=255)
                                                                                                                                                                                                                                       aaCCCTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGACCCTAATCTTAAAGGTGCAAAGACGCAAGCCGCAGAATTTCGTTTTGCGTTGTTGTTTTGGTATCGACAATTCCGGAAACGAGACCATTcatcata                       >  2:1672641/1‑287 (MQ=255)
                                                                                                                                                                                                                                        aCCCTGCCAAACCTAGCGCGAAAAAAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGAc                     <  2:329472/289‑1 (MQ=255)
                                                                                                                                                                                                                                        aCCATGCCACAACGGGCGAGATAATAATACGCAACGAT‑GACTGGGTGAGAATATTACTTAAGTTCAACATGCTTAAAAATGTTGGGTACTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGAc                     <  2:1068642/289‑1 (MQ=255)
                                                                                                                                                                                                                                         cccTGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTgg                                                                                                                                                                                                                          >  1:2006665/1‑91 (MQ=255)
                                                                                                                                                                                                                                            tGCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGa                 >  1:282049/1‑289 (MQ=255)
                                                                                                                                                                                                                                             gCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGa                                                                                                                                                                                            >  2:586417/1‑117 (MQ=255)
                                                                                                                                                                                                                                             gCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     >  2:2874304/1‑172 (MQ=255)
                                                                                                                                                                                                                                             gCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     <  1:2874304/172‑1 (MQ=255)
                                                                                                                                                                                                                                             gCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACt                                                                                                                                 <  1:1420261/176‑1 (MQ=255)
                                                                                                                                                                                                                                             gCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACt                                                                                                                                 >  2:1420261/1‑176 (MQ=255)
                                                                                                                                                                                                                                             gCCACACCGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTa                                                                                                            >  2:666138/1‑197 (MQ=255)
                                                                                                                                                                                                                                                   ccGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCt                                                                                                                   >  1:87931/1‑184 (MQ=255)
                                                                                                                                                                                                                                                   ccGAGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCt                                                                                                                   <  2:87931/184‑1 (MQ=255)
                                                                                                                                                                                                                                                      aGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTCAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCAATCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTGTTGCGATGTTGTTTTTGTATCGACAATTCCGTAAACGAGACCATTGCCTACGACTAGAATAAGGTc         >  2:242848/1‑287 (MQ=255)
                                                                                                                                                                                                                                                      aGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     >  2:1928242/1‑163 (MQ=255)
                                                                                                                                                                                                                                                      aGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACg                                                                                                                                     <  1:1928242/163‑1 (MQ=255)
                                                                                                                                                                                                                                                      aGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCt                                                                                                                   <  1:2942395/181‑1 (MQ=255)
                                                                                                                                                                                                                                                      aGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCTGAAACGATACAATTGCTCATGACCAGAATACGGTCtt       >  2:2720252/1‑288 (MQ=255)
                                                                                                                                                                                                                                                      aGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGAc                     >  2:525158/1‑275 (MQ=255)
                                                                                                                                                                                                                                                      aGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACgg           >  1:1436202/1‑285 (MQ=255)
                                                                                                                                                                                                                                                      aGCGCGATAATAATACGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACg            <  2:282150/284‑1 (MQ=255)
                                                                                                                                                                                                                                                            ataataataCGC‑ACCGATGACTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTc                          >  1:1159877/1‑264 (MQ=255)
                                                                                                                                                                                                                                                                           ||||||                                                                                                                                                                                                                                                                            
AGCGTGGTAATGAACGGCGTCACGTTGAGATAAGCGATAATCAGACCGTTGATCAAACCGATCACCGCACCAATGGCACAGACAATCAGAATAACCAGCGCAATCGGCATCGTCGCCATTTCCGGGAACACTTTGTTGGCGTTATCCATGGACTGCAATAATGTCGCAGCCACCACTGCCGCCAGCCCTACCTGACGACCAGCAGAAAGATCGGTCCCCTGGGTGACAATTAACCCTGCCACACCGAGCGCGATAATAATACGC‑ACGCTACTCTGGGTGAGAATATTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATC  >  CP042583/1812281‑1812820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A