Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F210 I1 R1	4928	368.7	6392010	97.5%	6232209	231.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,966,128	3 bp→CGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,966,128	0	G	C	99.7%	712.6 / NA	301	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (173/126); total (175/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*	CP042583	1,966,129	0	C	G	99.0%	700.5 / NA	301	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (2/0); major base G (171/125); minor base A (2/1); total (175/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,966,130	0	T	A	99.7%	713.7 / NA	301	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (173/125); minor base C (1/0); total (175/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 301 total aligned reads displayed.

CGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACGCTGAGCATGGTCAGGCTCAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACGCTCATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CGCTGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACACTATCGATGTTCAGGTTCTGGCGACGACGGTGAAGTTGCAGCAGCAGCGCAAGG  >  CP042583/1965852‑1966406

|||

    tCGGTGTAATCGAACCCGATCAGCAGCTAGGGGCACAGGCCCACGCGTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCcaca                                                                                                                                                                                                                                                                         <  1:1430748/289‑1 (MQ=255)

                  cccGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTAACGC‑AATCCACGTCCACACCAGCCGGCTGTAt                                                                                                                                                                                                                                                           >  2:1049801/1‑289 (MQ=255)

                  cccGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCcaca                                                                                                                                                                                                                                                                         <  2:2308434/275‑1 (MQ=255)

                  cccGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTAt                                                                                                                                                                                                                                                           >  1:2943006/1‑289 (MQ=255)

                  cccGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCCTCCCGCACCCGGCTAAACCCGATGTGAAAGTCGCCT‑ACCGACATCCACGTCCACTGCGGACGGCCGTAt                                                                                                                                                                                                                                                           >  2:2571201/1‑289 (MQ=255)

                     gATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGGGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGGTAAAGTCGCCT‑ACAGACATCCCCGTCCACAGCGGCTGGCTGTATg                                                                                                                                                                                                                                                          >  2:743912/1‑287 (MQ=255)

                      aTCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATg                                                                                                                                                                                                                                                          >  1:2630844/1‑286 (MQ=255)

                      aTCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATg                                                                                                                                                                                                                                                          >  1:2328139/1‑286 (MQ=255)

                                  gAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCCGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTa                                                                                                                                                                                                                                            <  1:3163035/288‑1 (MQ=255)

                                   aGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCCCTTCACAGCGCATATACTAGCAGGCGTACATGTGAATAAGGAAACCCACACCAGTAACCACCAAGAGCATGGTCAGCGCCAGGACGTCCAGCACCCGGATAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGGCCACCACGGCTGGCGGCATGTCCGCTCGTCGttcac                                                                                                                                                                                                                                          >  2:2413065/1‑286 (MQ=255)

                                     cacaGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCt                                                                                                                                                                                                                                                       >  1:1807556/1‑274 (MQ=255)

                                        aGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGAGGTTAAAGTCGCCT‑ACCGACATCCACGCCCAACACGACTGGCTGTATGGCTGCCCGCCGTTAGCgaaca                                                                                                                                                                                                                                     >  2:1969981/1‑287 (MQ=255)

                                                           cGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACGAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAg                                                                                                                                                                                                                    <  1:1826914/287‑1 (MQ=255)

                                                              ggTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTCTATGTCTGCTCGCCGTTAGCGAAGAAATCACCGCCCATAAAGGCGGt                                                                                                                                                                                                               >  2:3055147/1‑289 (MQ=255)

                                                                        cagcagGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATaa                                                                                                                                                                                                                      >  2:135210/1‑272 (MQ=255)

                                                                         agcagGTTGTCGGCAAGCGCCAGCACCACCATGCAGGCGTTGACAAGGTTGGTGGAAACGAAGAAGCGAGAGTTGCCCTCTTCACCGCGCATTCACCAGGAGGCGTACATGTGAATAAGGATACCCGCACCGGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAgc                                                                                                                                                                                                        <  2:2870992/285‑1 (MQ=255)

                                                                            agGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGcgccgc                                                                                                                                                                                                   <  1:1969981/287‑1 (MQ=255)

                                                                            agGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGcgccgc                                                                                                                                                                                                   <  2:1843220/287‑1 (MQ=255)

                                                                             ggTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCggct                                                                                                                                                                                                                                                                   <  1:1454343/222‑1 (MQ=255)

                                                                                tGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCCCGTCCACCGCAGCTGGCTGTATGTCTGCTCGCCGTCAGCGAAGAACTCAACGCCGATAAAGTCCGTTACCAGCGCCGCCAGGc                                                                                                                                                                                              >  2:1389/1‑288 (MQ=255)

                                                                                   cGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCcac                                                                                                                                                                                          <  1:1419101/289‑1 (MQ=255)

                                                                                        agaaCCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCggct                                                                                                                                                                                                                                                                   <  2:2982535/208‑1 (MQ=255)

                                                                                        aGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCggct                                                                                                                                                                                                                                                                   >  1:2982535/1‑211 (MQ=255)

                                                                                        aGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGACAAAGGCGGTTACCAGCGCCGCCCGGCCCACaaag                                                                                                                                                                                      >  2:2318832/1‑288 (MQ=255)

                                                                                         gCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGCCCAGCACCAGGTCAAAACCGCTGTTAAAGTCGCCT‑CCCCACCTCCACACCCACCGCGCCCGGCTGTCTCTCTGCCCCCCGTTAGCGAAGAACTCAACCCCGATCAAGGCGGTTACAACCCCCGCCAGGCCCCCagcac                                                                                                                                                                                     >  2:1893830/1‑285 (MQ=255)

                                                                                           aCCAGACCCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCt                                                                                                                                                                                   <  1:2656504/288‑1 (MQ=255)

                                                                                                     ccaTGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCggct                                                                                                                                                                                                                                                                   <  1:1757309/198‑1 (MQ=255)

                                                                                                       aTGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAAc                                                                                                                                                                                                                              <  2:1809392/233‑1 (MQ=255)

                                                                                                         gCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATcg‑cc                                                                                                                                                                   <  1:753918/289‑2 (MQ=255)

                                                                                                          cTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATcg‑ccg                                                                                                                                                                  >  2:873482/1‑287 (MQ=255)

                                                                                                             gCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCgg                                                                                                                                                                                                                                                                     <  2:283623/188‑1 (MQ=255)

                                                                                                             gCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCgg                                                                                                                                                                                                                                                                     >  1:283623/1‑188 (MQ=255)

                                                                                                                aTGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGAAAAAGGCGGTTACCAGCGCCCCCAGGCCCACAGAGCCTACGCCCACGACcg‑ccgagacgt                                                                                                                                                            >  2:2930770/1‑281 (MQ=255)

                                                                                                                          tGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCa                                                                                                                                                  <  1:906682/289‑1 (MQ=255)

                                                                                                                                 aGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCa                                                                                                                                           <  1:1852106/289‑1 (MQ=255)

                                                                                                                                      agaagCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCggct                                                                                                                                                                                                                                                                   >  1:2314450/1‑165 (MQ=255)

                                                                                                                                       gaagCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCgg                                                                                                                                                                                                                                                                     >  1:776948/1‑162 (MQ=255)

                                                                                                                                       gaagCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCgg                                                                                                                                                                                                                                                                     <  2:776948/162‑1 (MQ=255)

                                                                                                                                       gaagCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCa                                                                                                                                                                                                 >  1:2894268/1‑230 (MQ=255)

                                                                                                                                                         ttCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCAACGGGAGAATGCCAGCAGGACGaa                                                                                                                    >  1:2963773/1‑288 (MQ=255)

                                                                                                                                                         ttCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACACACCCCCCCGGGAGAATGCCCGCAGGACGAAg                                                                                                                   >  2:1486234/1‑289 (MQ=255)

                                                                                                                                                                cgcATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATcg‑ccgag                                                                                                                                                                <  1:3107890/237‑5 (MQ=255)

                                                                                                                                                                 gcATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCATACGCcgacga                                                                                                                                                                         >  1:1880175/1‑228 (MQ=255)

                                                                                                                                                                 gcATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCAGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGGTTTCAGACCAGCGCCCACGGGCGCATGCCACCAGGACGAAGCcaataca                                                                                                           >  2:223054/1‑286 (MQ=255)

                                                                                                                                                                    tgtaCCAGGAGGCGTACATGTGAATAAGCAAACCCACGCCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATgg                                                                                                        <  2:2587218/287‑1 (MQ=255)

                                                                                                                                                                             aggCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAaata                                                                                                 <  1:1049801/287‑1 (MQ=255)

                                                                                                                                                                              ggCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACaga                                                                                                                                                                                       >  1:1358396/1‑201 (MQ=255)

                                                                                                                                                                               gCGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCCCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGGTTCCAGACCAGCGCCCACGCGAGAATGCCAGCAGGACGAAGCCACTCAATGGCAAaataatac                                                                                             >  2:2462562/1‑287 (MQ=255)

                                                                                                                                                                                cGTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCcac                                                                                                                                                                                          >  1:2505531/1‑196 (MQ=255)

                                                                                                                                                                                 gTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTGAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGt                                                                                            <  1:241878/288‑1 (MQ=255)

                                                                                                                                                                                 gTACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACCTCCACAGCCGCTGGCTGGATGTCTGCTCGCCGTTAGCGAAGAACTCAACGCCGACAAAGGCGGTTACCACCGCCGCCAGGCCCACAGAGCCTACGCCGACGCTCG‑CAGAGACGTTCACCGAACAGCCACCACGGGAGAATGCCACCCGGGCCACGCCCATCAATCGCaaacgtatggat                                                                                           >  2:2383007/1‑280 (MQ=255)

                                                                                                                                                                                  tACATGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCGCGCCGTTAGCGAAGAAATCAACGCCGATCAAGGCGGTTACCAGCCCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAAACCAGCGCCCACGGGACAATGCCAGCAGGACGAGGCCAATCACTGGCAAaatatggggta                                                                                          >  2:1127124/1‑282 (MQ=255)

                                                                                                                                                                                     aTGTGAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAgg                                                                                       <  1:1191616/289‑1 (MQ=255)

                                                                                                                                                                                      tgtgAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGc                                                                                      <  1:511029/289‑1 (MQ=255)

                                                                                                                                                                                       gtgAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAAAATGCCAACAGGACGAAGCCAATCAATGGCAAAATAACGGTTAAGGCa                                                                                     >  2:2746952/1‑289 (MQ=255)

                                                                                                                                                                                         gAATAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGAACG‑CCGAGACGTCTTCAGACCAGCGCCCAAGGGAGAATGCCAGCAGGACGAAGCTCACAAATGGCAACATACAGGTGAAGGCAAg                                                                                   >  2:1197368/1‑289 (MQ=255)

                                                                                                                                                                                          aaTAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCggctggct                                                                                                                                                                                                                                                               >  1:1089807/1‑117 (MQ=255)

                                                                                                                                                                                          aaTAAGGAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCcac                                                                                                                                                                                          >  1:2698031/1‑186 (MQ=255)

                                                                                                                                                                                               ggAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCa                                                                                                                                                  <  1:963342/220‑1 (MQ=255)

                                                                                                                                                                                                    cccACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATc                                                                         >  2:947964/1‑288 (MQ=255)

                                                                                                                                                                                                          ccAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCcag                                                                                                                             <  2:1283073/230‑1 (MQ=255)

                                                                                                                                                                                                          ccAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCcag                                                                                                                             >  1:1283073/1‑230 (MQ=255)

                                                                                                                                                                                                              tGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCTTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCa                                                                                                                                           >  2:379448/1‑212 (MQ=255)

                                                                                                                                                                                                              tGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGcc                                                                                                                                                                              <  1:1936121/178‑1 (MQ=255)

                                                                                                                                                                                                              tGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTCTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAAAAATGCGTAAGGCAAGCATGTCCacacccgcgtccc                                                               >  2:1695942/1‑276 (MQ=255)

                                                                                                                                                                                                                accaccgagAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGACAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTAAACCGCGCATCCCACt                                                            >  2:3116049/9‑289 (MQ=255)

                                                                                                                                                                                                                accaccgagAGCAGGGTCAGCGACAGGCCGACCAGCACAAGGTTAAAACCGATGTTAAGGTCGCCT‑ACCAACACCCACGTCCACCGCGGCGACCTGTATGTCTGCTCGCCGTTAGCGAGGAAATCAACGCCGAACAAGGCGCTTACCAGCCCCCCCAGGCCCACAGAGCCTACGCCGACGATCGCCGCAG‑CGCTTGCAGACCAGCGCCCACGGGAGAATGCCAGCAAGCCGAAGCCAATCACTCGCTAAATAATGCTCATAGCAAGCATTCTCATCAGAGCAtcccgct                                                            >  2:201758/9‑284 (MQ=255)

                                                                                                                                                                                                                       agAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCcac                                                                                                                                                                                          >  2:1578379/2‑157 (MQ=255)

                                                                                                                                                                                                                       agAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCcac                                                                                                                                                                                          <  1:1578379/156‑1 (MQ=255)

                                                                                                                                                                                                                       agAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACggg                                                                                                                                       <  1:2572471/206‑1 (MQ=255)

                                                                                                                                                                                                                          gCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTactgaatcg                                                  >  1:485196/1‑282 (MQ=255)

                                                                                                                                                                                                                          gCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTactgaatcg                                                  >  1:2059338/1‑282 (MQ=255)

                                                                                                                                                                                                                          gCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTactgaat                                                    <  1:2746952/287‑6 (MQ=255)

                                                                                                                                                                                                                          gCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTactgaat                                                    <  2:1420348/287‑6 (MQ=255)

                                                                                                                                                                                                                           cATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTactgaatcg                                                  <  1:3016336/288‑8 (MQ=255)

                                                                                                                                                                                                                                        aggcCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTg                                    >  1:1225607/1‑289 (MQ=255)

                                                                                                                                                                                                                                         ggcCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCcga                                                                                                                                                                            >  2:51035/1‑153 (MQ=255)

                                                                                                                                                                                                                                          gcCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCca                                                                                                                <  1:674291/211‑1 (MQ=255)

                                                                                                                                                                                                                                          gcCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCca                                                                                                                >  2:674291/1‑211 (MQ=255)

                                                                                                                                                                                                                                              tCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTc                                            >  1:1631479/1‑275 (MQ=255)

                                                                                                                                                                                                                                              tCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGcgacg                              >  1:431102/1‑289 (MQ=255)

                                                                                                                                                                                                                                                    aCCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGt                         <  2:2641699/288‑1 (MQ=255)

                                                                                                                                                                                                                                                      cAGGTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGTGaa                      >  1:2796680/1‑289 (MQ=255)

                                                                                                                                                                                                                                                        ggTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCcaca                                                                                                                                                                                         <  2:3096919/125‑1 (MQ=255)

                                                                                                                                                                                                                                                        ggTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGTGAAGt                    >  1:24848/1‑289 (MQ=255)

                                                                                                                                                                                                                                                        ggTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGTGAAGt                    >  1:2289976/1‑289 (MQ=255)

                                                                                                                                                                                                                                                        ggTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGTGAAGt                    >  1:331818/1‑289 (MQ=255)

                                                                                                                                                                                                                                                         gTTAAAACCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATcg‑ccgagac                                                                                                                                                              >  2:2961898/1‑144 (MQ=255)

                                                                                                                                                                                                                                                             aaaCCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAaata                                                                                                 <  2:3176609/207‑1 (MQ=255)

                                                                                                                                                                                                                                                             aaaCCGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCCCACTTACTGAATCGATGTTCAGGTTCTGGCTTCGACGGTGAAGTTgca                >  1:722627/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                ccGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGTGAAGTTgcagcag            <  1:2139225/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                ccGATGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGTGAAGTTgcagcag            <  1:3070095/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                   aTGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGtt                                                                                           >  1:840676/1‑207 (MQ=255)

                                                                                                                                                                                                                                                                   aTGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGTGAAGTTgcagcagca          >  1:2374491/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                   aTGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGTGAAGTTgcagcagca          >  1:1500007/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                   aTGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAAGCAATGGCACAATAATGGTTAAGGCAAGCCTGTTCATCCGCGCATCTCACTTACTGACTCGAAGTTCAGGTTCTGGCGCCGACGGTGAAGTTGgatccgcag         >  2:1936879/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                    tGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCAt                                                                  >  2:630727/1‑231 (MQ=255)

                                                                                                                                                                                                                                                                    tGTTAAAGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCAt                                                                  <  1:630727/231‑1 (MQ=255)

                                                                                                                                                                                                                                                                      ttAAAGTCGCAT‑ACCGGCATCCACGTCCAACGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGTGAAGTTGCAGCAGCAgcgc      <  2:1441236/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                        aaaGTCGCCT‑ACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CCGAGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACTGAATCGATGTTCAGGTTCTGGCGACGACGGTGAAGTTGCAGCAGCAGCGCaa    <  2:2676538/289‑1 (MQ=255)

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CGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTGAATAAGGAAACCCACACCAGTGACCACGCTGAGCATGGTCAGGCTCAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCT‑ACGCTCATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTTACCAGCGCCGCCAGGCCCACAGAGCCTACGCCGACGATCG‑CGCTGACGTTTTCAGACCAGCGCCCACGGGAGAATGCCAGCAGGACGAAGCCAATCAATGGCAAAATAATGGTTAAGGCAAGCATGTTCATCCGCGCATCTCACTTACACTATCGATGTTCAGGTTCTGGCGACGACGGTGAAGTTGCAGCAGCAGCGCAAGG  >  CP042583/1965852‑1966406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A