Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
70 |
77.5 |
1840812 |
85.2% |
1568371 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,058,486 |
T→C |
19.2% |
S135P (TCG→CCG) |
torC → |
trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,058,486 | 0 | T | C | 19.2%
| 103.3
/ 5.3
| 57 | S135P (TCG→CCG) | torC | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| Reads supporting (aligned to +/- strand): ref base T (34/8); new base C (2/9); total (37/20) |
| Fisher's exact test for biased strand distribution p-value = 2.10e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTA > NC_000913/1058252‑1058708
|
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGCAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGTTAAACCTGAAAAATTCCAACCCAAACGC‑GCGGAACTTGCCGAGCCTGATTGGGCGCGAATACAAGAAAACA‑ACTCGGc > 1:538806/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑CAGGACATTGCCGAACGTGACTGGGCGCGAATGAAAGAAAACA‑ACTCgcg > 1:871094/1‑237 (MQ=255)
atatAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACACGGCACCCGGCCGc > 1:203115/1‑238 (MQ=255)
atatAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAAA‑AACCGGCAACCGGCCGc > 2:726531/1‑238 (MQ=255)
tataAACGTTCGGTGC‑TTTTCAGAACCGCCTCGGGCGGGCGGGCGAAATGCCATGACTGTCATACCCCGCCGGATATTCCAGGCATGGGGAGGCCAAACCTGA‑AAGGAAGAAATAATATCTACCAGCCCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCAAACCGC‑GGGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCACCCTGCCGCTc < 2:4340/239‑1 (MQ=255)
ataAACGGGGGGTTCATTTCCAGAC‑CCCCTCCGGCGTGCGAGCTAAATGCAATGCCTGTAATATCCCGCCGGATATTCCAGGCATGGGGAAGCGCAAACGGA‑AAGGGGACAATGATAACTCCCAGCCCTTTATTGCTCACCCCATTGATACACCGGAAAAATTCGAAGCCAAACGC‑GGGGAACTTGCCGGGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACCCGGCACCCTGCCGcccc < 2:256085/239‑1 (MQ=255)
aCAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGcc > 1:800379/1‑239 (MQ=255)
gTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACCCGGCAACCTGCCGCTCCTGCCATa > 1:154785/1‑239 (MQ=255)
gTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCCCGAATGAAAGAAAACA‑ACTCGGCAACCCGCCGCCCCTGCCATa > 2:122203/1‑239 (MQ=255)
gTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACCC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGACTGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCAtc > 1:174589/1‑238 (MQ=255)
ggTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGATTGGGCCGGAATGAAAAAAAACA‑ACTCGGCAACCTGACGCACCCGCCATaaaa > 2:294726/1‑237 (MQ=255)
cATTTCCAAAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATACCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTAcg < 1:122203/238‑1 (MQ=255)
ccGGCGGGCGGTTTGAATGCCCTGCCTGACATATCCGCCCGGAAATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GAGGAACTTGCCGAGCGTGAAGGGGCGCGAATGAAAGAAAACA‑ACCCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCg < 1:294726/239‑1 (MQ=255)
tGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcag > 1:392546/1‑239 (MQ=255)
tGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAACCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAACCA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcag > 1:662563/1‑239 (MQ=255)
cGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGa > 1:765410/1‑224 (MQ=255)
cGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcagc > 1:824582/1‑238 (MQ=255)
cttccATTACTTTCATCTCCCGCCGATTTTCCCAGGAAGGGTGAAGCAAAAACTGT‑AAGCGAGCAATAATATCCACCAGACTTATATGGCTCACTCCATCGATCACCCTGAAAAATTAGAACCCAAACGG‑GCGCACCTTGCCGAGCGTGAAGGGGAGCAAAAGAACGAAAACA‑ACTCGCCACCCCCCTGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAag < 2:487258/236‑1 (MQ=255)
gtttGTCCTACCCCGCGGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGAAATGATATCCACCAGACCTTTATGGCTCACTCAATTGATACACCTGAAAAATTCGAAGCAAAACGC‑GCGAAACTTGCCGGGCGTGAATGGGCGAGAATGAAAGAAAACA‑ACTCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACg < 2:897240/236‑1 (MQ=255)
cTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGATAGAAAACA‑ATTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGTACCTCGGAAGCCGCACCCTGAAGAGGCACGTc > 1:31988/1‑239 (MQ=255)
cATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGCTGGATCATGCGAACCAGCATCCTGAAGCAGCACGTCAGAt > 1:450797/1‑239 (MQ=255)
ccgGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAAATAAAGggggg > 2:871632/1‑238 (MQ=255)
gCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGCAAGAAAACA‑ACTCGCCAACCTGCCGCTCCTGCCATAACTACGATGCGAGGGAGCATGCGAACCAGAACACTCAAGCACCACGCAGGAGGAAGGGGGGAGGGAAAGaaaaa > 2:465372/1‑238 (MQ=255)
gCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATaa > 1:842668/1‑238 (MQ=255)
gCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTCCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATACTTAAGCAGCACGTCAGGTGTAGGGAGCAGCGAAAGATaat > 1:842674/1‑239 (MQ=255)
cAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCg > 1:456536/1‑239 (MQ=255)
aCTGGAAAGCGAGAAATAATATCTCCCAGCCCTTTTTTTCTCATCCCATTGATACACCTGAAAAATTCAAACCAAAACGC‑GCGGACGTGGCGGGGCGTGAAGGGGCGCGAAAAAAAGAAAACA‑ACTCGGCAACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAc < 2:203115/239‑1 (MQ=255)
cAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTAcg > 1:624729/1‑143 (MQ=255)
aatCCACCAGGCCTTTATTGCTCACTCCATTGAAACCCCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCTGGAATGGGCGCGAATGAAAGAAAACA‑ACGCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGc < 1:726531/236‑1 (MQ=255)
aCCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCAGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGCTGGCAGCGAAAGATAATCAAGCCTGCATCAACTGTCATAAAGGGATTGCcaacccg > 1:854315/1‑237 (MQ=255)
aCCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGCCTGTCATAAAGGAATTGCCCACCAGTTAcc > 1:534168/1‑239 (MQ=255)
tCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCCGATGAAGGTGCCAGCGAAAGATAATCAATCCTCCATCGCCTGTCAAAAAGGAATTGCCCCCCAGTTACCGGAAATGAgaa > 2:900990/1‑237 (MQ=255)
tctagtagtACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAAAAAACA‑ACGCGTCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg < 1:115657/231‑1 (MQ=255)
tCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATCACTACGATGCGATGGATCATGCGAACCAGCATCCTGACGCAGAACGTCCGTGGAAGGTGGCAGGGAAAGATAATCAATCCTGCATCACCTGTCATAAAGGAATTTCCAACCAGTTACCGGATATCAGAAACgg > 2:723751/1‑239 (MQ=255)
aTACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGACAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATCTGAGTACGGGCTTCCGt > 1:345353/1‑239 (MQ=255)
tACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAgg > 1:138324/1‑198 (MQ=255)
tACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCCCCAGTTACCGGATATGAGTAGCGGCTTCCGTa > 1:413012/1‑239 (MQ=255)
ccccTAAAAAATTCAAAG‑CAAACGCGGCGAAACTTGCCGACGGTGAATGGGCCGGAATGAAAGAAACCA‑ACCCGGAAACCTGCCGTCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAg < 1:358177/237‑1 (MQ=255)
cacCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGCTGAAGGCGGCAGCGAAAGATAATCAATCCTTCATCGACTGTCATAAAGGTATAGCCCACACGTTACAGGATATGAGTAGCGGCGTCCGTaa > 1:703837/1‑238 (MQ=255)
cacCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCgg > 1:357050/1‑216 (MQ=255)
cacCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCCGTTACCGGATATGAGTAGCGGCTTCCGTaac > 1:255173/1‑238 (MQ=255)
ccTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGCCTGTCATAAAGGAATTGCCCACCAGTTACCGGATATGAGTAGCGGCCTCCGTaacaa > 1:916655/1‑236 (MQ=255)
ccTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCCCCAGTTACCGGATATGATAAGCGGCTCCCGTAAGCa > 2:14760/1‑239 (MQ=255)
ttCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCCCCAGTTACCGGAAATGAGCAGCGGCTTCCGTAAAAAGTTCGCTGa > 2:58496/1‑239 (MQ=255)
cGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGCTGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGCTGAAGGTGGCAGCGAACGATAATCAATCCTGCATCGACTGTCATAAAGGACTTGCCCACCAGTTACCGGATATGAGCAACGGCATCCGAAAGAAGTGCGAAGAGc > 2:52195/1‑239 (MQ=255)
aaaccggcgGAAATTGCCGGGCGTAAATGGGCGCGAATGAAAGAAAACA‑ACCCGGCAACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTgcgcgc < 1:58496/233‑1 (MQ=255)
aCTTGCCGAGCTGGAAGGGGCGCGAATGAAAGAAACCA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAAt < 1:14760/238‑1 (MQ=255)
cTTGCCGGGCGTGAAGGGGCGCGAATGAAAGAAAACA‑ACTTGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGa < 1:75687/239‑1 (MQ=255)
gCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCTTGAAGCAGCACGTCAGATGAAGGTgg > 1:858452/1‑116 (MQ=255)
gaaaTGGTCGCAAATCAGAAAAATCA‑CCTGGGCAACCGGCCGCTCCTGCCATAACTGCGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTTGTGaca < 1:344165/237‑1 (MQ=255)
aTGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAACAGGTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGc > 2:640545/1‑239 (MQ=255)
aTGGGCCAGAATGAAAGAAAAAA‑AGCCGGCACCCTGCCTGCCCTGGCATAACTACGATGCGATGGATCAGGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg < 1:555004/238‑1 (MQ=255)
gggaggaaaTGAAAGAAAACC‑ACCTGGACACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTg < 1:871632/232‑1 (MQ=255)
ggaaaaaaaaaaaaaaAC‑ACGCGGAAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa < 2:413012/230‑1 (MQ=255)
gcgAATGAAAAAAAAAACACCGGGCAACTCGCCCACCCGGACATAACTACGATGAGATGGATGATGCAGAGCAACATACTGAAGCAGCAGGTCAGGTGAAGGTGGCAGCGAAAGATAATCAAACCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa < 2:407925/238‑1 (MQ=255)
ccaaaTGAAAGAAAACA‑ACCCCTCACCCCCCCCCTCCTGCCAAAACTACGATGCAATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTAc < 2:255173/235‑1 (MQ=255)
aTGAAAACAAACA‑CCCCGGCAACCTGCAGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTa < 1:473529/238‑1 (MQ=255)
|
GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTA > NC_000913/1058252‑1058708
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
