Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 185 118.8 2757226 85.6% 2360185 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,058,486 T→C 16.8% S135P (TCG→CCG)  torC → trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,058,4860TC16.8% 290.9 / 9.6 143S135P (TCG→CCG) torCtrimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit
Reads supporting (aligned to +/- strand):  ref base T (76/33);  new base C (9/19);  total (86/57)
Fisher's exact test for biased strand distribution p-value = 4.03e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 143 total aligned reads displayed.

GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTATTGATATTAAG  >  NC_000913/1058252‑1058719
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                          
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGCTACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAACGTGAATGGGCGCGAATGAAAAAAAAAAACCCgga                                                                                                                                                                                                                                        >  2:296139/1‑238 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAC‑GCCAAACGCGC‑CGAACTTGCCGAGCGGGACTGGGCGCGAATGAACGAAAACAACTCGGc                                                                                                                                                                                                                                        >  1:559244/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGTCGAGCGTGAATGGGCGCGAATGAAAAAAAACAACCCGGc                                                                                                                                                                                                                                        >  2:152386/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACCCGGc                                                                                                                                                                                                                                        >  1:1077029/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCCC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGc                                                                                                                                                                                                                                        >  1:854925/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCCC‑GGAACTTGCCGACCTGGAATGGGGGCGAATGAAAGAAAAAAACTCGGc                                                                                                                                                                                                                                        >  1:1019646/1‑239 (MQ=255)
  gtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGACCTTGCCGAGCGTGAATGGGCGCGAATGAAAAAAAAAAAACCGGCa                                                                                                                                                                                                                                       >  2:1124251/1‑238 (MQ=255)
           atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGc                                                                                                                                                                                                                             >  1:1060643/1‑238 (MQ=255)
           atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAAAACTCGTCA‑ACCTGCCGc                                                                                                                                                                                                                             >  1:940323/1‑238 (MQ=255)
           atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGGGAAGCGCAAACT‑GGAATCGAGCAATGATATCTACCAGACCTTTATTGCCCACTCCATTGATACACC‑TGAAAAATT‑CCAA‑ACCAAAACCGC‑GGAACTTGCCGAGCCGGAATGGGCACGCAGGAACAAAAACAACCGGGCA‑Acaacaccc                                                                                                                                                                                                                             >  2:439308/1‑231 (MQ=255)
           ataaAAACGGTCGGTGCATTTCCAGACCGCCCCCGGCGTGCGAGCTGAATGCCATGACTGTCATACCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATGGCCCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCt                                                                                                                                                                                                                            <  1:296139/239‑1 (MQ=255)
            tataAACAGCCGGTGCATTTCCAGACCGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTc                                                                                                                                                                                                                           <  1:1124251/239‑1 (MQ=255)
             ataAACGGTCGGTGCTGTCCCAGAACGCCTCCGGCGTGCGAGCTGAAGCCCATGACTTTCATATCCCGCCGGATATT‑CCAGGAATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTCCCAACCCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTcc                                                                                                                                                                                                                          <  1:132067/239‑1 (MQ=255)
                 acggTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCTTGACTGTCATACCCCGCCGGATATT‑CCAGGCATGGGGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGcc                                                                                                                                                                                                                      <  1:620561/236‑1 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAACCGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAACAAAACAGGCA‑ACCTCCCGCCCCTGCCATa                                                                                                                                                                                                                   >  1:635306/1‑239 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGACATTGCCGAGCGTGAATGGGCGCGACTGAAAGAAAAAAACTCGGCA‑ACCTTCCGCCCCTGCCaaa                                                                                                                                                                                                                   >  2:1123351/1‑237 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCGCCTGCCATa                                                                                                                                                                                                                   >  1:334687/1‑239 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCCC‑GGAACTTGCCGAGCGTGAATCGGCGCGCATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATa                                                                                                                                                                                                                   >  1:11345/1‑239 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCGCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACACCC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAAAACTCGGCA‑ACCGGCCCCACCTGCCATa                                                                                                                                                                                                                   >  2:243519/1‑239 (MQ=255)
                     tCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATaa                                                                                                                                                                                                                  >  1:108621/1‑239 (MQ=255)
                       ggTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCAACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAAAGCGC‑GGAACTTGCCGAGATTCAATGGGCGCGAATGAAAACAAACAACTCGGCA‑ACCTGCCGCTCCTGcgtgaact                                                                                                                                                                                                                >  1:927124/1‑232 (MQ=255)
                               tCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTAcgatgcg                                                                                                                                                                                                        >  1:1229666/1‑239 (MQ=255)
                               tCCAAAACGCCCCCGGTGGTCGGGTGGAAGGCCATGACTGTCACACCCCGCCGGATATT‑CCAGGCATGGGGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATGGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCAAATGAAAGAAAACAACCCGGCA‑ACCTGCCGCTCCTGCCATAACTAcgatgcg                                                                                                                                                                                                        <  1:527326/239‑1 (MQ=255)
                                   gAACGCCTCCGCAGTGCGAGCTGAATGACATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGCGAAGCGCAAACT‑GAAAACGAGCAATGATATCTACAAGACCTTTATTGCTCACACCATTGATACACC‑TGAACAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGACTGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCCTACCTAcgaatgcatgg                                                                                                                                                                                                    >  1:1059745/1‑231 (MQ=255)
                                      cGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAACGTGAATGGGCGCGAATGAAAGAAAACAACTCGACA‑ACCTACCGCTCCTGCCCTAACTACAATTCGATGGa                                                                                                                                                                                                   >  1:437351/1‑237 (MQ=255)
                                        ccTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATGGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCTC‑GGAACTTGCCGGGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑CACGGCCGCTCCTGCCCTAACATCGATTCGCTGGacaat                                                                                                                                                                                               >  2:794144/1‑235 (MQ=255)
                                               cgggggggCTAAATGCCATGGCTGTCATACCCCGCCGGATATT‑CCAGGAAGGGTAAAGCGAAAACT‑GGAAGCGAACAATGATATCTACCAGCCCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAag                                                                                                                                                                                         <  1:358133/231‑1 (MQ=255)
                                                  gCGAGCTGAATCCCATGCTTGCCATATCCCGCCGGATATT‑CCAGTCATGCTGAAGCGCAAACT‑GGAAGCAAACAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACCCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcag                                                                                                                                                                                      <  1:120290/238‑1 (MQ=255)
                                                   cGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCCCCGGCCATAAATAATAAGCGATGGACCAAGCGAagcagc                                                                                                                                                                                     >  2:505927/1‑238 (MQ=255)
                                                          aaTGCCATGACTTGCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGCCCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGa                                                                                                                                                                              <  1:1297675/238‑1 (MQ=255)
                                                              ccttGACTGTCATACCCCCCCGG‑TATTCCCAGGCATGGGGAAGGCAAAACG‑GGAAGCGAGAAATGATATCTACCAGCCCTTTATTGCTCCCCACATGAATACACC‑GAAAAAATT‑CGAA‑GCCAAACGCGG‑GGAACTTGCCGAGGGTGAATGGGCGGGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAagcag                                                                                                                                                                         <  2:1060643/236‑1 (MQ=255)
                                                                aTGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAGACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGa                                                                                                                                                                                                   >  1:428393/1‑211 (MQ=255)
                                                                 tGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGACAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGACAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTAcgat                                                                                                                                                                                                           >  2:370617/1‑202 (MQ=255)
                                                                   attgtaaatccccGCGGGATTTT‑CCAGGATGGGTAAAGC‑CAAACTGGGAAGCGAGAAAGAAATTCTCCCAACCTTTTATTGCCCCCTCCTTGGATACCCC‑TAAAAAATT‑CGAA‑CCAAACCGCGG‑GGAACTTGCCGGGCGTGAATGGGCGCAAAGAAAAGAAAAAAACTCGGAA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGt                                                                                                                                                                    <  2:1077029/229‑1 (MQ=255)
                                                                      gTCATATCCCCGCGGATTTT‑CCGGGGTTGGTGAAGCCAAAACT‑GAAAGCAGACAATGATACCACCCAGGCCTGTATTGCCCCCTCCATTGATACACC‑GAAAAAATC‑CGAA‑GCAAACCGCGA‑GGAACTTGCCGGGGGTGAAGGGGCGCGAATGAAAGAAACCAACCCGGCA‑ACGTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAg                                                                                                                                                                 <  2:1129459/239‑1 (MQ=255)
                                                                       tCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCCGCCGCCCCTGCCCTAACAACGATCGGAAGAACCATGCGCACCAGCACCCTGAAGAAGCACgccgga                                                                                                                                                                >  2:1058997/1‑234 (MQ=255)
                                                                               cgccgGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGTGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAag                                                                                                                                                                            >  1:213986/1‑219 (MQ=255)
                                                                                 ccgGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGACCATCCGAAGCAGCATCCTGAACCAGCACGTCAgtgaaagggggc                                                                                                                                                      >  1:487364/1‑228 (MQ=255)
                                                                                                  tGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGCATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCCTAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCCCGTCCAATGAAGGGGGCAGCGAAAGAAaatca                                                                                                                                       >  2:265822/1‑238 (MQ=255)
                                                                                                    gTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTACTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTAcgatg                                                                                                                                                                                                          >  1:162160/1‑169 (MQ=255)
                                                                                                             aaaCT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCCGATGAAGGGGGCAGCGAAAGGTAATCCATCCTGCATCg                                                                                                                            >  1:650640/1‑238 (MQ=255)
                                                                                                             aaaCT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCg                                                                                                                            >  1:854736/1‑238 (MQ=255)
                                                                                                              aaccgggAAGCAGGCAATGATATCTACCAGACCTTTATGGCTAACCCCATTAATACACC‑TAAAAAATT‑CGAA‑GCCAAAGGGGC‑GGAACTAGCCGAGGGTAAATGGGGGCAAATGAAAGAAAACATCTCGGCA‑ACCTGCCGCACCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGa                                                                                                                           <  1:791204/234‑1 (MQ=255)
                                                                                                                     aaGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGCCTGTcct                                                                                                                    >  1:387750/1‑237 (MQ=255)
                                                                                                                       gCGATCATTGAGTTCCACCACACCTTTATAGCACCCCGCATTGATACATC‑TGAAAAGTC‑CGAA‑GACAACAGCAG‑GGAATGGGCCAGGGGAGAGTGGTCGGAAAGGAGAAAAAAAACGTCGGAA‑ACCGGCCCCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATa                                                                                                                   <  2:202973/238‑1 (MQ=255)
                                                                                                                          aGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGGGGAAGGGAAAGAAAATCAATCCTGCATCGCCTGCCATAAAgg                                                                                                               >  2:961531/1‑239 (MQ=255)
                                                                                                                          aGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGGGGAACGGAAAGATAATAAAACCTGAACCGACGGTCAAAAAgg                                                                                                               >  2:683747/1‑239 (MQ=255)
                                                                                                                            cAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGCAGCAGCACGTCAGATGAAGGGGGCAGCGAAAGAAAATCAATCCTGCATCGACTGCCAAAAAggaa                                                                                                             >  2:804412/1‑237 (MQ=255)
                                                                                                                            aaaggATTTCTACCAGACCTTTATTGCTCTCTCCATGGATACCCC‑TAAAAAATT‑CGAA‑GCCAAACGCGC‑GGACCTTGCCGAGCGTAAATGGGCGCAAATGAAAGAAAACAACTCGGCA‑CCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTa                                                                                                             <  1:778997/235‑1 (MQ=255)
                                                                                                                                    tCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGCTGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCcca                                                                                                      >  1:984366/1‑238 (MQ=255)
                                                                                                                                    tCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCcca                                                                                                      >  1:1132515/1‑238 (MQ=255)
                                                                                                                                    ctccccAGCCTTTTTTTGCTCACTACTGTGAACCACC‑TGAAAAATG‑CGAA‑CCAAAACGCGG‑GGAACTTCCCGGGGGTGAAGGGGCGCAAAGAAAAGAAAAAAACCCGCCA‑CCCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCccac                                                                                                     <  2:487364/235‑1 (MQ=255)
                                                                                                                                         cAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCCGtt                                                                                                >  1:516323/1‑239 (MQ=255)
                                                                                                                                           gACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGaa                                                                                                                                                                             >  1:244870/1‑160 (MQ=255)
                                                                                                                                           gACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGCCTGTCATAAAGGAATTGCCCACCAGTTa                                                                                               >  1:547362/1‑238 (MQ=255)
                                                                                                                                           gACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGACATAAAGGAATTGCCCACCAGTAAc                                                                                              >  2:700242/1‑239 (MQ=255)
                                                                                                                                            aCCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAACGATAATCAATCCTGCATCGCTTGTCATAAAGGAATTGCCCACCAGTTAc                                                                                              >  1:648857/1‑238 (MQ=255)
                                                                                                                                            aCCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCAGTTAcc                                                                                             >  1:1352328/1‑239 (MQ=255)
                                                                                                                                             cttttactgtacACTCCTTTGAT‑CATC‑GTAAAAAAT‑AGAACGCAAAGCGAGC‑GGAATTTTGCGAGAGGGATGGGGCGAGAAGAAAAAAAATCTACTCGGAA‑ACGCTCCCCTCCTGCCATAACTACGATGCGAGTGATCATGCGAAGCAGCATCCTGAAGCAGCACCTCAGAGGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCTCCAGTTAc                                                                                              <  2:933040/226‑1 (MQ=255)
                                                                                                                                                ttATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAAATATACAATCCTGCATCGCCTGTCATAAAGGAATTGCCCACCAGTTACCggtt                                                                                         >  1:1282822/1‑237 (MQ=255)
                                                                                                                                                  aTTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGatat                                                                                       >  1:1002322/1‑239 (MQ=255)
                                                                                                                                                      cTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGc                                                                                                         >  1:888800/1‑217 (MQ=255)
                                                                                                                                                      cTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCAGTTACCGGATATGAGt                                                                                   >  1:681008/1‑239 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCCGATGAAGGTGGCAGCGAAAGATAATCAATCCGGCACCGCCTGTCTAAAAGGAATTGCCCACCAGTTACCGGAATTGGGTAg                                                                                 >  2:1264264/1‑239 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGCTAATCAATCCTGCATCGACTGTCATAAAGGCATTGCCCACCAGTTACCGGCTCTGCGTAg                                                                                 >  1:488181/1‑239 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGGGTCAGCGAAAGTTAATCAATCCTGCATCGACTGTCTTAAAGGTATTGCCCACCAGTTACCGGAAATGAGAAg                                                                                 >  2:39082/1‑239 (MQ=255)
                                                                                                                                                           tctaTTGATACCCC‑TAAAAAATG‑CCAA‑GCCAAACGGCG‑GGAACTTGCCGGGCTGTAATGGGCGCGAATGAAAGAAAACCACCCGGCA‑ACCTGCCCCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  1:1215311/236‑1 (MQ=255)
                                                                                                                                                           tcaaTTGAACCACC‑TAAAAAATT‑CGAA‑GCCAAACGGGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  1:1123351/236‑1 (MQ=255)
                                                                                                                                                           tCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGCCTGTCATAAAGGGATTTCCTACCAGTTACCGGATATGAGTAGCg                                                                               >  1:768091/1‑238 (MQ=255)
                                                                                                                                                           tCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGt                                                                                                              >  1:1173656/1‑207 (MQ=255)
                                                                                                                                                           tCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGGATTGCCCACCAGTTACCGGCTATAAg                                                                                    >  1:769572/1‑233 (MQ=255)
                                                                                                                                                           tCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGAAGCGATGGATCATGCGAAGCAGCATCCTAAAGCAGCACGTCAGATTAAGGTGGCAGCGAAAGAAAATCAAGCCGGCATCGACTGTAATAAAGGCATTGCCCACCAGTTACCGGaaataggaaggga                                                                              >  2:962037/1‑230 (MQ=255)
                                                                                                                                                           tCCATTGA‑ACACCGTTAAAAATG‑CGAA‑GCCAAACGCGC‑GGAACTTTCCGGGCGTTAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  1:243519/239‑1 (MQ=255)
                                                                                                                                                           cccATTGATCCCCC‑TAAAAAATT‑CGAA‑‑CCAAAACCGCGGGAACTTGCCGGGCGGAAAGGGGCGCAAATAAAAAAAAACAACTGGGAA‑CCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  2:854736/238‑1 (MQ=255)
                                                                                                                                                           cccATGGATACCCC‑AGAAAAATT‑CGAA‑GCCAAACGCGG‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  1:700242/238‑1 (MQ=255)
                                                                                                                                                                     cacC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCg                                                                               >  1:545322/1‑228 (MQ=255)
                                                                                                                                                                     cacC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGGATTGCCCCCCAGTTACCGGATATGAGTAGCGGCTTCCGTaa                                                                     >  1:864409/1‑238 (MQ=255)
                                                                                                                                                                     cacC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAAATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCAGTTACCGGAAATGAGAAACGGCTTCCGaaaa                                                                    >  2:1217753/1‑238 (MQ=255)
                                                                                                                                                                       cc‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCa                                                                  >  1:709473/1‑239 (MQ=255)
                                                                                                                                                                         cgcaaaaaTTCCGAA‑GCAAAACGCGC‑GGACCTTGACGGGGGTGAAGGGGCGCGAAGGAAAGAAACCACTTCTGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCa                                                                  <  1:863111/236‑1 (MQ=255)
                                                                                                                                                                                             acccccgggggaCTTGCCGGGGGTGAGTGGGGGGGAAAAAAAAAAAAAACCCGGGCA‑TCCCGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTgcgcgc                                                <  2:768091/228‑1 (MQ=255)
                                                                                                                                                                                              aCGCCC‑GGACCGTGCCGTGGTTGAATGGGCGCAAATAAAAAAAAACAACCGGGCA‑CCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCCGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCa                                              <  1:99767/239‑1 (MQ=255)
                                                                                                                                                                                                        acggcccGAGCGTAATCGGGCTCGAAAGAAAGAAAACATCGCGGCA‑GCCTGCCACCCCGGCCATAACTACGAAGCTATGGATCATGCGGAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACGGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGGAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAAt                                      <  1:1089084/233‑1 (MQ=255)
                                                                                                                                                                                                         cTTGCCGAGCGTAAAGGGGCGCGAATGAAAGAAACCAACTCGGCA‑CCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGa                                    <  1:961531/239‑1 (MQ=255)
                                                                                                                                                                                                             cggggggTGAAGGGGCGCAAATGAAAAAAAACAACCGCGCA‑CCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAg                                 <  1:927180/232‑1 (MQ=255)
                                                                                                                                                                                                                  cGTGAATGGGCGAGAATGAAAGAAAACAACTCGGCA‑CCCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAgtggtg                            <  1:158548/238‑1 (MQ=255)
                                                                                                                                                                                                                    agAATGGGCGCGATTGAAAGAAGCCAACGCGGCA‑CCCTGCCGTTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGac                          <  1:962037/237‑1 (MQ=255)
                                                                                                                                                                                                                     tgaaggggGCAAAAGAAAAAAAACAACCCGGCACCCCGGCCCCCCCTGCCATAACCAAGATGCGATTGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGGGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGac                          <  2:334687/234‑1 (MQ=255)
                                                                                                                                                                                                                     gAATGGGCGCGAAGGAAAGAAAACAACTCGGCT‑ACCTGCCGGTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGaca                         <  1:939575/238‑1 (MQ=255)
                                                                                                                                                                                                                      aaggggCGGAAAAGAAAAAAACCAACCCGGCA‑ACCTCCCCCTCCTGCCATAACTACGATGGGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  2:415176/236‑1 (MQ=255)
                                                                                                                                                                                                                      aaggggCGCAAATAAAAAAAAACAACCCGGAA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  1:271797/236‑1 (MQ=255)
                                                                                                                                                                                                                       tgggcggcaaaTAAAAAAAAACAACTCGGCA‑CCCGGCCCCCCCTGCCATAACTACGCTGCGTTGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATGGCCCACCAGTTACTGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  2:546484/229‑1 (MQ=255)
                                                                                                                                                                                                                       aTGGGCGCAAATGAAAAAAAAAACCTCGCAA‑CCCTGCCCTCCCGGCCATAACTACGATGCGATGGATCATGCGAAGCAGCAACCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  2:108621/238‑1 (MQ=255)
                                                                                                                                                                                                                         ggggccgAATAAAAAAAAAACACGCGGGACACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCt                     <  2:1323911/234‑1 (MQ=255)
                                                                                                                                                                                                                         gggCGAGAATAAAAAAAAACAAAGCGGCC‑ACCTGCCCTCCCTGCCAAAACTACGATGCGATGGGTCATTCGAAGCAGCATCCTGAAGCAGCACGTCAGATTAAGGTGGCAGCGAAATATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCTGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCt                     <  2:291563/238‑1 (MQ=255)
                                                                                                                                                                                                                          ggcccaaaTGAAAAAAAACAACCCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCt                     <  1:804412/231‑1 (MQ=255)
                                                                                                                                                                                                                            tgcaaaaaaaaaaaaaCCACTCGGCA‑ACCAGCCTCTCGTGCCATAACTACGATGCGAGGGATCATGCGAAGCAGCATCCTGAAGCAGCACGGCAGATGAAGGTGGCAGCGAAAGATAAGCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTGCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa                  <  2:559244/230‑1 (MQ=255)
                                                                                                                                                                                                                            gcagAATGAAAAAAAACAACACGGAA‑ACTTGCCGCCCCTGCCATAACGACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa                  <  1:1175508/235‑1 (MQ=255)
                                                                                                                                                                                                                            cacaaaggaaagaaaACAACCGGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa                  <  1:974277/231‑1 (MQ=255)
                                                                                                                                                                                                                                               cTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCa                                              >  1:1013521/1‑191 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                          
GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATT‑CCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACC‑TGAAAAATT‑CGAA‑GCCAAACGCGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTATTGATATTAAG  >  NC_000913/1058252‑1058719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A