Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 150 105.7 2655328 79.3% 2105675 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,184,543 C→A 100% P1100Q (CCG→CAG)  rpoB → RNA polymerase, beta subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,184,5430CA100.0% 468.8 / ‑6.7 136P1100Q (CCG→CAG) rpoBRNA polymerase, beta subunit
Reads supporting (aligned to +/- strand):  ref base C (0/2);  new base A (75/59);  total (75/61)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 136 total aligned reads displayed.

GAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCAAA  >  NC_000913/4184307‑4184778
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                            
gAAACCCGAGTTCGAAAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGc                                                                                                                                                                                                                                            <  1:881753/239‑1 (MQ=255)
   acacGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTgg                                                                                                                                                                                                                                         >  1:715397/1‑239 (MQ=255)
       gAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGt                                                                                                                                                                                                                                     <  1:1281681/239‑1 (MQ=255)
            cgggaagaaACCTGAAGCGAAAAGTCGGAAAATCCCCCAGGGCGACGATCCGGCACCGGGCGTGCTGAAGATTGGTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTGCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGt                                                                                                                                                                                                                                <  2:73070/236‑1 (MQ=255)
                  gaaACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACAAGCTGGGCGTACCGTCTCGTa                                                                                                                                                                                                                          >  1:1188383/1‑239 (MQ=255)
                     aCTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGACGTCACGGTAACAAGGGGGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGACGTACCGTCTCGTATGa                                                                                                                                                                                                                       >  1:90987/1‑239 (MQ=255)
                      cTCGAGGGGAAACGGCGCAAAGTCGCCCAGGGCGGCGTGCTGGCCCCGGGCGTCGTGAAGATTGTTAAGGTATGTCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACACGATGGCAGGTCGGCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGaa                                                                                                                                                                                                                      <  2:773512/239‑1 (MQ=255)
                                     cgcAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGGGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGGACGCCGGTAGACATCGTACTGAACCAGCTGGGGGTACCGTCTCGTATGAACATCGGTCAG‑ATcc                                                                                                                                                                                                       >  1:1296885/1‑238 (MQ=255)
                                          aaTCACCCAGGGCAACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGaaa                                                                                                                                                                                                 <  1:681375/239‑1 (MQ=255)
                                               cccAGGGGGACGGTGTGGCCCGGGGGGTGTCGAAGGTTTGTAAGGGTTATCGGGGGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAAGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            <  2:58906/239‑1 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCa                                                                                                                                                                                             >  1:391985/1‑238 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            <  1:32735/239‑1 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            <  1:29512/239‑1 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACAAGCTGGGCTGACCGTTTCGTATGAAAATCGGTCAG‑ATCTTCGAAACCCa                                                                                                                                                                                             >  1:960569/1‑238 (MQ=255)
                                               cccAGGGCCACGATCTGGCACCGGGCGGGCTTAAGATTGTTAAGGTAGAGCTGGCGGTTAAACGCCGTAACCAGACTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            <  1:327339/239‑1 (MQ=255)
                                                         cgaTCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGGATg                                                                                                                                                                                   >  1:448100/1‑238 (MQ=255)
                                                            tCTGGCACCGGGCTTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGt                                                                                                                                                                                                                                <  1:1240410/191‑1 (MQ=255)
                                                            tCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCt                                                                                                                                                                                                      <  1:485741/216‑1 (MQ=255)
                                                              tGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGCCACGGTAACAAGGGTGTAATTTCTAAGATCCACCCGATCGGAGATATGCCTTACGATGAAAACGGTAGCCCGGAAAGCATCGAACCGAACAACACGGGCGTACCGTCTCGGATGAACATCGG‑CAGAATACACAAAACCCACCCGGGTAGGGcggga                                                                                                                                                                             >  2:699090/1‑235 (MQ=255)
                                                               ggCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGa                                                                                                                                                                            >  1:392553/1‑239 (MQ=255)
                                                                      ggCGCGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGTTCGTCCCGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCATTACGATGATAACGGTACGCCGGTAGACATCGTACTGAACAAGCTGGGAGACCCGGCTCGTAGTACCATCGG‑CAGAATCCCCCCAACCCACCAGGGGAAGGGCGCGGAAgggaa                                                                                                                                                                     >  2:521217/1‑236 (MQ=255)
                                                                             ttaaGATTGTTAAGGTAAATCGGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGAc                                                                                                                                                              <  1:1142635/237‑1 (MQ=255)
                                                                             taaaGATTTGTAAGGTTTATGTGGCGGTTAAACGCCGTGGCCCGCTTGGTGTAAAGGTGGCAGGTCCTTCGTGTAACAAGGGTGTAATTTCTAAGAGCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACTAGCTGGGCGTATCGTCTCGTATGAACATCGGTCAG‑ATCCTCGCAACCCGCCTGGGTATGGCTGCGAAAGGTAGCGGCGAc                                                                                                                                                              <  2:168159/237‑1 (MQ=255)
                                                                             tGAAGGTTTGTAGGGTATATCTGGCGGGTAAAAGCCGGTTCCAGCCTGGTGACAAGGTGGCAGGTCGTGACGGTAACGAGGGTGTAATTTCTAAGATAAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGAc                                                                                                                                                              <  2:1136184/239‑1 (MQ=255)
                                                                              gAAGATTTGTAAGGTATATTGGGGGGTTAAACGCCGGATCCAGTCGTGGGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGAc                                                                                                                                                              <  2:391985/238‑1 (MQ=255)
                                                                                              tatCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGCAAAGATCAACGCCATg                                                                                                                                               >  1:1327039/1‑237 (MQ=255)
                                                                                              tatCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGAGGTAAACGGTACGCCGGTAGACATCGGACTGAACCAGCTGGCGGGACCGTCTCGGTTGGACTACGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCCGCGGAAAGGATAGGGGGAAAGATCAACGCCacgag                                                                                                                                             >  2:303755/1‑235 (MQ=255)
                                                                                              tatCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGAAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAAAGGTACGCCGGTAGACACCGAACTGAACCAGCTGGGCGGACCGTCTCGAATGAACATCGGTCAG‑TACCTCGAAACCCACCATGGTATGGCGTGGCAAGGAATCGCGGGAAAGAGCAACGCCAGGcg                                                                                                                                             >  2:518805/1‑238 (MQ=255)
                                                                                                tCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTAGGCGTACCGTCTCGTATGACCATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGcccttctaa                                                                                                                                           >  1:990062/1‑232 (MQ=255)
                                                                                                     cGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGCCAAGATCAACGCCATGCTGAAAca                                                                                                                                       >  1:322732/1‑238 (MQ=255)
                                                                                                     cGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCCGGGAATGGCGGGGAAAGGGATCGGCGACAAACAAAAACCCATGCTGAAAaag                                                                                                                                      >  2:917493/1‑239 (MQ=255)
                                                                                                                  tATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCACCCTGGGAATGGCTGCGAAAGGTGTCGGCGCAAAGATAAACACCAAGCTGAAAAAGAAGAaaaaagagg                                                                                                                         >  2:590678/1‑236 (MQ=255)
                                                                                                                  tATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCAAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCCCCTGGGTATGGCTGCGAAAGGGATCGGGGACAAAATCAACGCCAAGCCGAAAAAACAACaaaaagggg                                                                                                                         >  2:496056/1‑236 (MQ=255)
                                                                                                                         ccTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCAAAAGGTATCGGCGACAAGCTCACCGCCATGCTGAAACAGCAGCACGAAGTCGCGaa                                                                                                                     >  1:572416/1‑236 (MQ=255)
                                                                                                                          cTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACCTCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAAcg                                                                                                                  >  1:526286/1‑237 (MQ=255)
                                                                                                                            ggTGAAAAGGTGGGAGGTCGTCACGGTAACAAGGTTGTAATTTCTAAGATCAACCCGATCGAAGATTTGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTTAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg                                                                                                               <  2:111072/239‑1 (MQ=255)
                                                                                                                             gTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGAATCGGCGCCAAGATCAACGCCATGCTGAAACAGCACCAAGAAGTCGCGAAACTgcgc                                                                                                              >  1:111072/1‑239 (MQ=255)
                                                                                                                             gTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAA‑ATCCCCGAAACCCACCTGGGTATGGCTGCGACAGGGATCGGCGACAAGATCGACGCCATGCTGAAACACCAGAAAGAAAACGCGAAAcagggc                                                                                                              >  2:838189/1‑234 (MQ=255)
                                                                                                                                aCAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGaa                                                                                                           <  1:113831/239‑1 (MQ=255)
                                                                                                                                          aGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAg                                                                                                  <  1:648181/238‑1 (MQ=255)
                                                                                                                                          aGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAg                                                                                                  <  1:590678/238‑1 (MQ=255)
                                                                                                                                          aGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAg                                                                                                  <  1:1022416/238‑1 (MQ=255)
                                                                                                                                            gcgtttgcGGTAAGAAGGGTGTATTTTTTAAAGGAAAACCGGACGAAGATTTGTCTTACGATTAAAACGGTACGCCGGGAGACATGGTTCTGAATCAGCTGGGCGTACCGTCGCGGATGAACAGCGGTCAG‑AGCCTCGAAGCCTCCCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAATCTGCGCGAATTCATCCAgcg                                                                                                <  2:990062/231‑1 (MQ=255)
                                                                                                                                              cgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGCAACTGCGCGAATTCATCCAgcttgc                                                                                             >  1:1132574/1‑239 (MQ=255)
                                                                                                                                              cgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGACAAAATCAACCCCATGCTGAAAAACAAGCAAGAAAACCCGAAACGGCGCGAATTCaacaaccgggg                                                                                             >  2:835338/1‑229 (MQ=255)
                                                                                                                                               gtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcgtgcg                                                                                            <  1:838189/239‑1 (MQ=255)
                                                                                                                                                      tAAAAAGGTTGTAATTTTTAAGATCAGCCCGATCGAAGGTTTGCCTTACGATAAAAACGGGACGCCGGTAAACAGCGTACGGAACCAGCTGGGCGTACCTGCTCGTATGAACATCGGACAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGAt                                                                                      <  2:619075/238‑1 (MQ=255)
                                                                                                                                                              gtgtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGCCAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATTCAGCGTGCCTAAGATCTGGgc                                                                                >  1:1086655/1‑236 (MQ=255)
                                                                                                                                                              gtgtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTAc                                                                                         <  1:1020595/227‑1 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAATCCCACCTGGGTATGGCTGCg                                                                                                                                                                             <  1:1300610/141‑1 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGGAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTCCGACTTGGGCGCTg                                                                            >  1:11654/1‑238 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGGACGATCTGGGCGCTg                                                                            >  1:814852/1‑238 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGAGAAACTGCGCGAATTCATCCAGCGTCCGCACGACCTGGCCGCTg                                                                            >  1:799158/1‑238 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGACAAGATCAACGCCCTGCTGAAACAGCAGCAAGAAGTCGCGCAAATGCGCGAAATCAACCAGCGGGGGTACCACCTgtgggggga                                                                           >  2:919279/1‑231 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTCCg                                                                                                                                                                             >  2:1300610/1‑141 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGGATGGCTGCGAAAGGAATCGGCGACACCGTCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGGAACTGCGCGAATTCATCCCGCGCGGGTACAAACTggggcccga                                                                           >  2:758639/1‑233 (MQ=255)
                                                                                                                                                                    tttCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGCCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGt                                                                        >  1:195193/1‑238 (MQ=255)
                                                                                                                                                                      tCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCg                                                                     >  1:115187/1‑239 (MQ=255)
                                                                                                                                                                       cTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTCTGGCTGCGAAAGGGATCGGTGACAAGATAAACGCCATGCTGAAACAGCAGCAAGAACTCGCGACACACCCCGAATTACTCCAGCGTGCGTACGACCTGGGCGGTCAAGTTCgg                                                                    >  2:296484/1‑238 (MQ=255)
                                                                                                                                                                         aaGCTCAACCCGATCGAAGATATGCCTTACGATTAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGGTCGTCa                                                                  <  1:517579/239‑1 (MQ=255)
                                                                                                                                                                         aaGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCa                                                                  <  1:734066/239‑1 (MQ=255)
                                                                                                                                                                         aaGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGCCa                                                                  >  1:365762/1‑239 (MQ=255)
                                                                                                                                                                               aaCCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            >  2:1325885/1‑111 (MQ=255)
                                                                                                                                                                               aaCCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            <  1:1325885/111‑1 (MQ=255)
                                                                                                                                                                               aaCCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGAATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGACAGt                                                            >  1:1319264/1‑239 (MQ=255)
                                                                                                                                                                                   cGATCGAAGATTTGCCTTTGGGTGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAc                                                        <  2:365762/239‑1 (MQ=255)
                                                                                                                                                                                   cGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAc                                                        <  1:499941/239‑1 (MQ=255)
                                                                                                                                                                                   cGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAc                                                        <  1:835338/239‑1 (MQ=255)
                                                                                                                                                                                    gaatgAAAATATGCCTTACGGTCAAACCGGTACGGCGGTACACAACGTACTGAACCAGATGGGCGTACCGGTCCGTATGAACAGCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGGCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAcc                                                       <  2:108694/235‑1 (MQ=255)
                                                                                                                                                                                      tCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCCAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGGGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTAACCTg                                                     >  1:1160367/1‑239 (MQ=255)
                                                                                                                                                                                            atatGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAGATCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATTTGGGCGCCGACGTTCGTCAGAAAGTTGACCttataa                                                 >  1:832620/1‑232 (MQ=255)
                                                                                                                                                                                              ttGCCTTACGGTGAAAGCGGTACGCAGGGAGACCTCGTACTGAAGCCGCTGGGGCTACCGTCTCGTATGAACATCGGTCAA‑AACCGCGAAACCCACCTGGGTATGGGTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGGTGACCTGAGTACCtt                                             <  2:994200/238‑1 (MQ=255)
                                                                                                                                                                                               tGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGCACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAACGGTATAGGCGACACGATCCACGCCATGCTGAAACAGCAGCAAGAAGTCGTGAAAACGCGGGAATTCCTACCGCGAGCGTACGACCTGGGCGCTGACGTTAGCCGGAAAGGTGACCTggggaagccc                                            >  2:936681/1‑230 (MQ=255)
                                                                                                                                                                                                gCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGCCAAAATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAACATCCGCGAATTAATCCAGCGGGCGTACGAACTGGGCGCGGCCGTTCGCCAAAAAGTTGCCCGGAGGACCTTCa                                           >  2:1199789/1‑239 (MQ=255)
                                                                                                                                                                                                gCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCa                                           >  1:254801/1‑239 (MQ=255)
                                                                                                                                                                                                gCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGAACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTc                                            >  1:1072144/1‑238 (MQ=255)
                                                                                                                                                                                                 ccTTACAAATAAAACGGGTCGCCGGTAGGCTTCGTACTGAACCAGCTGGGCGTACCGTATCGTATGAACATCGGTCAG‑AGCCTCGAAACCCCCCTGAGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATGTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAg                                          <  2:832620/239‑1 (MQ=255)
                                                                                                                                                                                                   ttACGATGAAAACGGTACGCCTGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGc                                         <  1:919279/238‑1 (MQ=255)
                                                                                                                                                                                                    tACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGAATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTCCGATCTGGGCGCGACCGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCgt                                       >  1:561589/1‑238 (MQ=255)
                                                                                                                                                                                                     aCGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCGGAAAGTTGACCTGAGTACCTTCAGCGAt                                      >  1:1046461/1‑239 (MQ=255)
                                                                                                                                                                                                      cGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTTGGCGCTGACGATCGTCAGAAAGTTGACCTGTGACCCTTCAGCgtgg                                     >  1:880588/1‑236 (MQ=255)
                                                                                                                                                                                                           aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGCCGAAAAGTTGACCTGAGAACCTTCAGGGATaaagaa                                >  1:454234/1‑239 (MQ=255)
                                                                                                                                                                                                            agaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCCGAAAGTTGACCTGAGAACCTTCACCGTTGaagaag                               >  1:1240205/3‑239 (MQ=255)
                                                                                                                                                                                                                     gCCGGTAGACCTCGTACTGAACCAGCTGGGCGTACCGTCCCGTATCAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTc                      <  1:847043/239‑1 (MQ=255)
                                                                                                                                                                                                                      ccGGTAGGCCTCGTACCGAACCAGCTGTGCGTACCGTCCCGTATGAACATCGGCCAG‑ATCCGCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCt                     <  1:768592/239‑1 (MQ=255)
                                                                                                                                                                                                                      ccGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCt                     <  1:296484/239‑1 (MQ=255)
                                                                                                                                                                                                                                tCGTACGGAACCCGCTGGGCGGACCGGTTCGGATGACAAGTGGTCAA‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAc           <  2:19090/239‑1 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCTAAACTCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGGTATTGGTTGGGCTGAAAAca          >  1:25116/1‑238 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACACGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCCCGAACCTGCGCCAATTCATCCAGCGTGCGCACGATCTGGACCCTGACGCTCGGCAGAAAATTTGCCTGACTAACTTCCAAGAGGTAGAAGGTATGCGTATGGCTGAAAAc           >  2:703857/1‑238 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTTTGCGTCTGGCTGAAAAcc          >  1:239825/1‑239 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGaaaa            >  1:806904/1‑237 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAc           >  1:1076311/1‑238 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGCCTGGCTGAAAAcc          >  1:1006180/1‑239 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCACCGATGAAGAAGTTATGCGCCTGGCTGAAAAc           >  1:188542/1‑238 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGCCAGAAAGTTGACCTGGGTACCTTCAGCGATGAGAAAGTTATGCTCCTGGCTGAAAAc           >  2:245367/1‑238 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCACCCAGCGTCCGTACGAACTGGGCGCTGACGTTGCGCAGAAAGTTGACCCTGGTACCTTCGGGGGTGAAGAAGTTATGGGCCGGGGTAAAAAcc          >  2:1325374/1‑239 (MQ=255)
                                                                                                                                                                                                                                   tACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCACCGATGAAGAAGTTATGCGTCTGGCTGAAAACCt         >  1:310437/1‑238 (MQ=255)
                                                                                                                                                                                                                                       gAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑GTCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCa    <  1:470456/239‑1 (MQ=255)
                                                                                                                                                                                                                                       gAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCa    <  2:392553/239‑1 (MQ=255)
                                                                                                                                                                                                                                         aCCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGAACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTCCGCaaa  >  1:460237/1‑239 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                            
GAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCAAA  >  NC_000913/4184307‑4184778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A