Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F9 I0 R1 81 94.4 2603848 74.4% 1937262 227.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,184,543 C→A 100% P1100Q (CCG→CAG)  rpoB → RNA polymerase, beta subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,184,5430CA100.0% 468.7 / ‑6.7 139P1100Q (CCG→CAG) rpoBRNA polymerase, beta subunit
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base A (69/67);  total (70/69)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 139 total aligned reads displayed.

ACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCA  >  NC_000913/4184310‑4184776
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            
      gTTCGAGAAGAAACCCGAAGCGAAACGCCGAAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑Ta                                                                                                                                                                                                                                   <  1:236188/238‑1 (MQ=255)
         cgggaaaacaCTCGAAACGAAACGCCGCAAAATCACCCAGGGCGAAGCTCTGGCCCCGGGCTGGCTGAAGAGTGGTAAGGTATATCTGGCGGTGAAACGCCTGATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAGCCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGt                                                                                                                                                                                                                               <  2:288850/230‑1 (MQ=255)
         cGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGt                                                                                                                                                                                                                               <  2:139219/239‑1 (MQ=255)
                     cGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACa                                                                                                                                                                                                                   <  1:1137020/239‑1 (MQ=255)
                           gAAACGCCCCAAAATCCCCCAGGGCGACGTTTTGGCCCCGGGCGTGCTGAAGATTGTTAAGGTATAGCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGt                                                                                                                                                                                                              <  2:29726/238‑1 (MQ=255)
                               ccccgcAAAATCCCCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGAt                                                                                                                                                                                                         <  1:698773/237‑1 (MQ=255)
                                    caaatacACCCAGGGCGGCCGCCTGGCCCCAGGTGGGCTGGAGGTTGTTAATGTATACCTGGCGGTTAAACCCCGTGTCCAGCCGGGTGACAAGATGGCAGTGCGTCACGGTAACAAGGGTGAAATTGCTAAGATCAACCCGAGCGAAGAGATGCCT‑TACGATGAAAACGGTACGCCGGTAGACGTCGTACTGAACCCGCTGGGCG‑TACCGTCTCGTATGAACATCGGTAAGATACTCg                                                                                                                                                                                                    <  2:1211491/233‑1 (MQ=255)
                                       aaccccccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGaaa                                                                                                                                                                                                 <  1:497080/234‑1 (MQ=255)
                                            cccGGGGGGACCGTCGGGCCCCGGGGGTGCTGAAGGTTGTTAAGGGAGTTCGGGCGGTTAAATGGCGTTGCCAGCCTGTGGACAAGATGGCAGGTCGTACCGGTAACAAGGGTGGAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTAAGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCAc                                                                                                                                                                                            <  2:930990/239‑1 (MQ=255)
                                            cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCAc                                                                                                                                                                                            <  1:454183/239‑1 (MQ=255)
                                                 ggCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACCTCGTACTGAACCAGCTGGGCG‑TACCGTCCGGTATGACAATCGGTCAGATCCTCGAAACCCACCTggg                                                                                                                                                                                       >  1:182971/1‑239 (MQ=255)
                                                 ggCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGAGGAAAACGGTACGCCGGTAGACATCGTACTGAACCACCTGGGGG‑TAACGCTCCGCATGAACACCGGGTAGAAACTCAAAACACCCCgggg                                                                                                                                                                                       >  2:917919/1‑239 (MQ=255)
                                                 ggCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGGGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTTCGCCGGTAGACAACGTACTGAACCAGCCGGGGG‑GACCGACTCGACTGAACATCGGTCAGACCCTCGAAACCCCCCTggg                                                                                                                                                                                       >  2:105003/1‑239 (MQ=255)
                                                     acgaTCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGTGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGa                                                                                                                                                                                                          >  2:198842/1‑216 (MQ=255)
                                                     acgaTCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAAACCGATCGAAGATATGCCT‑TACGATGAAAACGGAACGCCGGTAGACAATGGACTGACCCAGCTGGGCG‑TACCGTCTTGATCGAAAAACGGTCAGACCCTCCAAACCCCCCTGGGGATg                                                                                                                                                                                   >  2:825780/1‑239 (MQ=255)
                                                      cgttCTGGCAACGGGCGTGCTTAAGATTGTTAAGGTATAGTGGGCGGTTAAACGCCGTAACCAGCCTGGTGACAAGATGGCAGGTCGTGACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATgg                                                                                                                                                                                  <  1:1147914/236‑1 (MQ=255)
                                                           tggtcccGGGTGTTCTGAAGATTGTTTAGGTATGTCTGGCTGTAAAACGGAGGTCACAGCTTGGTGAAAAGCTGGGACGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAGCCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCg                                                                                                                                                                             <  2:304586/234‑1 (MQ=255)
                                                                   ggCGTGCTGACGATTGTTAAGGTATATCTGGCGGTTACACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTAGTCACGGTAACAAGGGTGTACTTTCTAAGATCAACACGATCGACGATATGCCT‑TACGATGGAAACGGTACGCCGGTAGACATAGTCTTGACCAAACTAGGCG‑AACCGTGTCCCACGACCATCGGTCCGATACTCGCAACACGACCGGGGATGGCTGGGAAAggaac                                                                                                                                                                     >  2:1001152/1‑236 (MQ=255)
                                                                   ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGGG‑TACCGTACCGTATGAACATCGGGAAGATCCTCTAAACCCACCTGGGAATGGCTGGGAAAGGCAt                                                                                                                                                                     >  1:1223073/1‑239 (MQ=255)
                                                                   ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGCAGACATCGTACTGAACCAGCTGGGCG‑AACCGTCTCGTATGAACATCGGTCAGATCCCCGAAACCCACCTCGGTATGGCTGCGCAAGGGAt                                                                                                                                                                     >  2:841677/1‑239 (MQ=255)
                                                                   ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGCGACAAGATGGCAGGTCGTCACGGTAACAAGGGGGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCCCGTATGAACATCGGTCAGATCCTCGGAACCCACCTGGGGATGGCTGCGAAAggaa                                                                                                                                                                      >  1:142169/1‑236 (MQ=255)
                                                                           gAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGCTCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACGGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTGGAAAACCACCTGGGAATGGCTGCGGAAGGAATCGGCGACa                                                                                                                                                             >  1:1012579/1‑239 (MQ=255)
                                                                           gAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGAc                                                                                                                                                              <  1:1199693/238‑1 (MQ=255)
                                                                                     aaGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGc                                                                                                                                                   <  1:850864/239‑1 (MQ=255)
                                                                                     aaGGTATATCTGGCGGTTAAACGCCGTAACCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGc                                                                                                                                                   <  1:616595/239‑1 (MQ=255)
                                                                                                  cGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACACAATCAACGCCATGCTGAAAca                                                                                                                                       >  1:1155461/1‑238 (MQ=255)
                                                                                                   ggTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCCCCTGGGTATGGCTGCGAAAGGTATGGGCGCCAAAATCAACCCCATGCGTAAAcaga                                                                                                                                     >  1:443288/1‑238 (MQ=255)
                                                                                                   cgTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcag                                                                                                                                      <  1:575788/237‑1 (MQ=255)
                                                                                                     ttAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcagcag                                                                                                                                   >  1:165213/1‑239 (MQ=255)
                                                                                                       aaaCGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGaaa                                                                                                                                                                                                 <  2:336910/175‑1 (MQ=255)
                                                                                                       aaaCGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGaaa                                                                                                                                                                                                 >  1:336910/1‑175 (MQ=255)
                                                                                                        aaCGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAAAGCAGCaa                                                                                                                                >  1:133133/1‑239 (MQ=255)
                                                                                                             gggttCCAGCGCGGTGACAAGAGGGCAGGGCGTCACGGAAACAAGGGTGTAATTTCTAAGATGACACCGATCGAAGATAAGCCT‑TACGATGAAAACGGTACGCGGGTAGACATCGTACTGAACCAGCAGGGCG‑TACCGTCTCGTAGGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAGAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaagaag                                                                                                                            <  2:1301197/234‑1 (MQ=255)
                                                                                                               tATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGCCAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTc                                                                                                                          >  1:116755/1‑238 (MQ=255)
                                                                                                               tATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCCTGCTGAAACAGCAGCAAGAAGTc                                                                                                                          >  1:338788/1‑238 (MQ=255)
                                                                                                                       cTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACt                                                                                                                  >  1:436919/1‑238 (MQ=255)
                                                                                                                         gggtaCAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg                                                                                                               <  1:105003/235‑1 (MQ=255)
                                                                                                                         ggTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGCATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAACAGCAAGAAGTCGCaaaaacacg                                                                                                               >  2:186866/1‑234 (MQ=255)
                                                                                                                         ggTGAAAAGATGGCACGGTGTGACCGGAAAAAGGGTGTAATGTCTAAGATCAACCCGATCGGAGATATGCCT‑TACGATGAAAACGGTCAGTCGGTAGGCACTGTACTGAACCAGCTGGGCG‑TACCGGCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg                                                                                                               <  2:851020/239‑1 (MQ=255)
                                                                                                                           tGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGcgcg                                                                                                             >  1:1231818/1‑239 (MQ=255)
                                                                                                                           tGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCGGCGAAAGGTATCGTGCACAAGATCAACGCCATGCTGAAAAACACGCAAGAAAGCGGGAAACGgccgg                                                                                                             >  2:1225952/1‑236 (MQ=255)
                                                                                                                            gACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGcgcg                                                                                                             <  1:917919/238‑1 (MQ=255)
                                                                                                                                   tGGCAGGTCGTCGCGGGAACAAGGGTGTAATTTCGTAGCTCAAACCGAACGAAGATAGGCCT‑TACGATGAAAAGGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCGCCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATc                                                                                                     <  2:248378/239‑1 (MQ=255)
                                                                                                                                    ggCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGCATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTCCGCGAATTCATc‑c                                                                                                   >  1:662500/1‑239 (MQ=255)
                                                                                                                                    ggCAGGGCTTCACGGTCACAAGGGTGGAATTTCGACGGATAACCCCATCGAAG‑GATTCCTGGTCTGGTAAAACGGTTCGCCGGTAGACATCGTACTGAACCAGGTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCGAGAAACCCACCTGGGTATGGCTGCTAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATc‑c                                                                                                   <  2:744011/239‑1 (MQ=255)
                                                                                                                                          tcgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAgcg                                                                                               <  1:825780/237‑1 (MQ=255)
                                                                                                                                          tagtcACGGTAACAAGGGTGTAAGTTCAAAGAGCAACCCGATCGAAGATATGCCG‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAgcgt                                                                                              <  1:1001152/236‑1 (MQ=255)
                                                                                                                                           cgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGCATTGGCGACAAGATCAACGCCAGTCTGAAACAGCAGCAAGAATTCGCGAAACTGCGCGCATTCATC‑CAgcgtcc                                                                                            >  1:248378/1‑237 (MQ=255)
                                                                                                                                              cACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAgcgtgcgt                                                                                          <  1:1224409/238‑1 (MQ=255)
                                                                                                                                                           gtgtAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGgcgcg                                                                            >  1:207296/1‑238 (MQ=255)
                                                                                                                                                           gtgtAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCt                                                                            >  1:615155/1‑239 (MQ=255)
                                                                                                                                                             gtAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCCCGAATTCATC‑CAGCGGGCGTACGATCTGGGCGCTg                                                                           >  1:974941/1‑238 (MQ=255)
                                                                                                                                                              tAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGt                                                                                                                                                                                      >  2:217345/1‑131 (MQ=255)
                                                                                                                                                              tAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGt                                                                                                                                                                                      <  1:217345/131‑1 (MQ=255)
                                                                                                                                                                    cTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCATCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCCGCAAAAGATCGCGAAACTGCCCGAATTCATC‑CAGCGTGCGGACCACTTGGGCGCCGCC‑GTTcc                                                                   >  2:469094/1‑237 (MQ=255)
                                                                                                                                                                      tagtccaccccGGTTGAAGTAATTCCT‑TACGGTGAACACGGTACGCCGGTAGACATCGCACTGAACCAGCTGGGCC‑GACCTTATCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCATCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCa                                                                <  2:458755/231‑1 (MQ=255)
                                                                                                                                                                          tCAACCCGATCGAAGATATGCCT‑TACGATGAAACCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGa                                                              <  1:1287180/237‑1 (MQ=255)
                                                                                                                                                                            aaCCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCAACCTGGGTATGGCTGCGAAAGGTATCGGAGACACGATCAACCCCATGCTGAAACAGCAGCAAGAAAGCGGGAAACTGAGCGACTTAATCACAGC‑TGCGTAAGATCCGGGCGCTGCC‑GTGCggacacaagg                                                          >  2:863798/1‑230 (MQ=255)
                                                                                                                                                                             aCCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGGTTGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGtt                                                         <  1:208978/239‑1 (MQ=255)
                                                                                                                                                                             aCCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAAGGCCATGCTGAAAAAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGAGCGTACGATCTGGGCGCTGCC‑GTTCGACAGGAAGtt                                                         >  1:104552/1‑239 (MQ=255)
                                                                                                                                                                             aCCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGtt                                                         <  1:913359/239‑1 (MQ=255)
                                                                                                                                                                               ccgaccgaAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGa                                                       <  1:466393/239‑1 (MQ=255)
                                                                                                                                                                                cGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCT‑GGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGAcc                                                     <  1:447203/239‑1 (MQ=255)
                                                                                                                                                                                   tCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACGTCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAACAGCAAGAAGGTGGCAAACTGTGCGAATTCATC‑CAGCGTGCGTACCGTCTGGGCGCTGCC‑GACCCTCACAAAGTTGAccgc                                                   >  2:597098/1‑237 (MQ=255)
                                                                                                                                                                                   tCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGTGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTg                                                   >  1:132105/1‑239 (MQ=255)
                                                                                                                                                                                      aaGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACCGCGCGAATTCATC‑AAGCGTGCGCACGCGCGGGGCGCGGAC‑GTTCGCAAGAAAAttacaccggga                                                >  2:466393/1‑230 (MQ=255)
                                                                                                                                                                                       aGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAGACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTgg                                                                                 <  1:140582/206‑1 (MQ=255)
                                                                                                                                                                                       aGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAg                                                           <  1:1279315/227‑1 (MQ=255)
                                                                                                                                                                                       aGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGt                                                <  1:900136/238‑1 (MQ=255)
                                                                                                                                                                                             gCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAAcc                                                                                                                                                                                               <  2:445001/91‑1 (MQ=255)
                                                                                                                                                                                             gCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGGATGGCTGCGAAAGGCAGCGGCCACAAGATCAACGCCATGCTCAACCAGCAGCAAGAAGTCGGGAAACTCCGCGAATTCCTC‑CAGCGGCCGCACGAGCTGGGCGCTGAC‑ATTCCACCGAAAGTTGACCCGAAGACATTCa                                         >  2:33305/1‑239 (MQ=255)
                                                                                                                                                                                              ccT‑TTCGGTGAAAACGGTCCCCCGGTAGACATCGTTCTGAACCAGCTGGGCG‑TACCGGCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCTACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTCCCTTCAg                                        <  2:1231818/239‑1 (MQ=255)
                                                                                                                                                                                              ccT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGGCGCGAAACTGCGCGAATTCATC‑CAGCGTGGGGACGACCTGGGGGCTGAC‑GTTCGGCAGAAAGTTGACCTGAGAACCTTCAg                                        >  2:570424/1‑239 (MQ=255)
                                                                                                                                                                                               cctttggATGAAACCGGTGCGCCGTTTGCCACCGTACTGAACCAGCCGGGCGCTCCCTGATGGTGTGAGCA‑CGGTGAGGTCCGAGAAGCCCGACTGGGTATGGGTGCGAAAGGTTTCGGCGAAAAGATCAGCGGCATGCTGAAACAGGAGCAAGAAGTCGAGAAACTGCGGGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCGTCAg                                        <  2:674996/233‑1 (MQ=255)
                                                                                                                                                                                               cT‑TACGATTAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAg                                        <  1:1015579/238‑1 (MQ=255)
                                                                                                                                                                                               cT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAg                                        <  1:1230939/238‑1 (MQ=255)
                                                                                                                                                                                                  tACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAACCAGCAGCAAGAAGTCGCGAAACTGCGCGTATTCATC‑CAGCTGGCGGACGA‑CTCGGCGGCGTCGGTTCGTCAGACATGTGATCTGCGCCACTTCAGCGa                                     >  2:1148213/1‑239 (MQ=255)
                                                                                                                                                                                                  tACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCCTC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGCCCTGAGTACCTTCcgcgc                                     >  1:84583/1‑238 (MQ=255)
                                                                                                                                                                                                  tACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTAGCGGCGACAAGATCAACCCCATGCTGAAACATCAGCCAGAAGCAGCGACACTGCGCGAATTCAGC‑CAGCGTGCGTACGATCTGGGGGCGGAC‑GTGCGTCCGAAAGGTGACCTGAg                                                 >  2:1279315/1‑227 (MQ=255)
                                                                                                                                                                                                    cGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGCCAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGGGCGTACGATCTGGGGGCTACC‑GTTCGTCGGAAAGTTGACCTGAGTACCTTCAGCGATg                                   >  1:788470/1‑239 (MQ=255)
                                                                                                                                                                                                    cGAGGAAAACGGTCAGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTAGTATGAACAGCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATg                                   <  2:879791/239‑1 (MQ=255)
                                                                                                                                                                                                    cGAAGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATg                                   <  1:861620/239‑1 (MQ=255)
                                                                                                                                                                                                    aatggAAAACGGTCACCCGGTAGACATTGTACTGAACCAGCGGGGCG‑TACCTTCCCCTAGGAACATCGGTCAGATCCCCGAACCCCACCTGGGTATGGCTGCGAAAGGTAACGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATg                                   <  2:1278059/235‑1 (MQ=255)
                                                                                                                                                                                                       tGAAAACGGTACGGCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATgaa                                 <  1:1046624/238‑1 (MQ=255)
                                                                                                                                                                                                       tGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAAAGCCCTGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CCGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAATTGACGTAAGTACCTTCACCGagaagg                                >  2:188581/1‑234 (MQ=255)
                                                                                                                                                                                                       tGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATAGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGGGCGTACGATCTGGGGGCTGAC‑GTTCGCAAGGAGATTAACCTACGAACCATCAGCGAGgaaa                                >  2:1135838/1‑238 (MQ=255)
                                                                                                                                                                                                         aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGGGTTgaggaa                              >  1:1256981/1‑239 (MQ=255)
                                                                                                                                                                                                         aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTAAGCGATgaagaa                              >  1:802032/1‑239 (MQ=255)
                                                                                                                                                                                                         aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGCCGACAAGATCAACGCCATGATGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGAACTGGGCGCTAGC‑GTTCGGCAGAAAGTTGCACTTGGTAACTTCAGCGCTgacaga                              >  2:1015579/1‑235 (MQ=255)
                                                                                                                                                                                                                tACGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGCAGAAGTTATGc                       >  1:1279700/1‑239 (MQ=255)
                                                                                                                                                                                                                 aCGCCGGTAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGGGTAACTTCAGCGATGAAAAAGTTATGCg                      >  1:647436/1‑239 (MQ=255)
                                                                                                                                                                                                                        tAGACATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCACCAAGAAGTCCCGAAACTGCGCGAATTCATC‑CAACCGACGTACCACCTGGGCGCTGAC‑GTTCGTCAGAAAGATTACCTCAGTACCTTCAGCGTTGAAAAAATAATgagcggcgcg               >  2:283983/1‑230 (MQ=255)
                                                                                                                                                                                                                            cATCGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCa                                                                <  1:568883/186‑1 (MQ=255)
                                                                                                                                                                                                                              tcttacgggaCCAGCTGGGGG‑TACCGGTTCGTATTAAAAGCGGTCAGAACCCCGAAACCCCCCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGAACAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAc         <  2:436919/230‑1 (MQ=255)
                                                                                                                                                                                                                              tCGTACTGAACCATGTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAc         <  1:403982/239‑1 (MQ=255)
                                                                                                                                                                                                                              tCGTACTGAACCAGCTGGGGG‑TACCGTCTCGTATGACACTCGGTCAGATCCCCGAAACCCACCTGGGGATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGGCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAc         <  2:662500/239‑1 (MQ=255)
                                                                                                                                                                                                                              ctgTACTGAACCAGGTGGGCG‑TACCGTTTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAc         <  1:151973/237‑1 (MQ=255)
                                                                                                                                                                                                                               cGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCTTC‑CAGCGTGCGTACGAGCTGGGCGCTGAC‑GTTCGTCCGAAAGTTGACCTGAGTACCTTCAGGGTTGCAGAAGTTATGGGTCTGGCTGAAAAcc        >  1:649021/1‑239 (MQ=255)
                                                                                                                                                                                                                               cGTACTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGCTGAAGAAGTTATGCGCCTGGCTGaaaa          >  1:847297/1‑237 (MQ=255)
                                                                                                                                                                                                                                   cTGAACCAGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTgcg    <  1:69097/239‑1 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            
ACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCT‑TACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCG‑TACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATC‑CAGCGTGCGTACGATCTGGGCGCTGAC‑GTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCA  >  NC_000913/4184310‑4184776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A