Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F110 I1 R1
|
16 |
43.2 |
1568152 |
90.1% |
1412904 |
142.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
4,049,913 |
IS2 (–) +5 bp |
noncoding (15‑19/109 nt) |
spf → |
Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
4049913 = | 0 (0.000) | 42 (0.980) |
35/284 |
0.2 |
100% |
noncoding (15/109 nt) |
spf |
Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| ? | NC_000913 |
4498181 = |
NA (NA) | noncoding (1/1331 nt) |
IS2 |
repeat region |
| * |
? |
NC_000913 |
= 4049917 | 0 (0.000) | 52 (1.230) |
46/280 |
0.0 |
100% |
noncoding (19/109 nt) |
spf |
Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| ? | NC_000913 |
= 4499511 |
NA (NA) | noncoding (1331/1331 nt) |
IS2 |
repeat region |
TGATAAACATAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4050054‑4049913
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGG > NC_000913/4498181‑4498320
TGATAAACCTCCCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTAT < 2:368851/143‑1
acaccaCGCATCAGGCATTACGTATCTCTTCTTTCGCCCAGTAAAAAACGCCCCCGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTG < 2:226612/137‑1
TCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTATGAAAGATAGAAGATCTTATAGAGTGGCCCCCTGca > 2:23066/1‑141
cagTACGGATCTTTTCTTTCTCCTATTAAAAATCGCCCCTGTCATTACTGACTGGGGCGGCTAATATATTAAGCCAAATACGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCC < 2:11559/140‑1
CATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCC < 2:199755/143‑1
CATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCC < 2:455550/143‑1
GGATCTTTTCTTTCGCCCAATAAAAAACGCCCTAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATACTATAGACTGGCCCCCTGAAACTCCCGACAA > 2:409407/1‑143
GGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACAGGCCGCCTGGATCTCCAGACAA > 2:122469/1‑143
GCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATGCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAA > 2:653200/1‑143
AATAAAAAACGCTCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAA < 1:669625/143‑1
AATAAAAAACGCCGCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAA < 2:682479/143‑1
AAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA < 1:510659/143‑1
AGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATA < 2:180718/143‑1
GTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC < 2:527573/143‑1
ATTACTGACTGGGGCGGACAAAATAATCAGCCAAATCCGATTACGTGAAGTAAAAGGACTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAACACATGATAGTCATAATACTAG > 2:96295/1‑143
GACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA < 1:419568/143‑1
GACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA < 1:84854/143‑1
CTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGA < 2:222611/143‑1
GGGCGGCTAAAATATACAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCCTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTA < 1:320159/143‑1
GCTAAAAGATTCAGCCGAATCCGATTACGTGAAGGAAAAGGTCTGAAAGAGAGAACATCATATAGACTGGCCCCCTGTATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAT < 2:128744/143‑1
TAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGATTTTAGACTAGTCATTG > 2:393882/1‑143
AAATATTCAGCCAAATCCGAGTACGTGAAGTAAAAGGTCTGAAAGATAGCACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGA < 1:194453/143‑1
AAATATGCAGCCAACGCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGA < 2:589112/143‑1
TATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAA < 1:490479/143‑1
ataCAGCCAAATCCGAGTACGTGAAGAAAAAGGACTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAC < 1:149554/140‑1
ATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACATCCACTATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTAATTGAAAAAC > 1:46250/1‑143
AGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAATAGTTTTTAGACTAGTCATTGGAGAACAGAT > 2:373885/1‑143
CAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT > 1:716456/1‑143
CAAAGCCGAGTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTAGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT < 2:585954/143‑1
AAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTGGTCATTGGAGAACAGATGATT > 1:270535/1‑143
AATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCAAGACAAGCAATATCACTTAAATACATCATAGTCTAAAGACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTG > 1:773307/1‑143
atGTGAAGTCACAGCTCGGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAG < 2:687633/141‑1
ACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAGGATAGATGTGTTgg > 1:733574/1‑141
tTGACGTAAAAGGTCTGACAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAGATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGG < 2:403027/142‑1
AAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCCATATCGCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTGATAGGGCCGGCGAc > 2:721797/1‑142
AAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATACGTGATCGCCTTAATACTAGTTTTTAGACTAGTCATTGGAGCACAGATGCTTGCTCGCTCAGGGGCGGAGAg > 2:713239/1‑142
GAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTCGAGAACAGATGATTAATGTCTTAGGACCGGAGAAACGCAGAC > 2:508764/1‑143
AAGATAGAACCTCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGG < 1:231779/143‑1
TAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGACAATGGAGAACAGAGGATTGATGTCTTAGGGCCGGAGAAGCGCAGAGGGCGTc > 2:384170/1‑142
GAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAATTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACC > 2:364905/1‑143
TCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAACTTATTGTTTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACA < 1:653200/143‑1
TTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGACGATTGATGGCTTAGGGCGGGAGAAACGCAGACGGCGGACCACACAGG > 1:71506/1‑143
TGATAAACATAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4050054‑4049913
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGG > NC_000913/4498181‑4498320
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
