Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F999 I1 R1 225 156.4 11709729 83.8% 9812752 75.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,627,142 +G intergenic (‑24/+23) yhiH ← / ← yhiI putative ATP‑binding component of a transport system, fragment 1/putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,627,1401.G98.5% 341.4 / ‑1.5 133intergenic (‑22/+25)yhiH/yhiIputative ATP‑binding component of a transport system, fragment 1/putative membrane protein
Reads supporting (aligned to +/- strand):  ref base . (0/2);  new base G (77/54);  total (77/56)
Fisher's exact test for biased strand distribution p-value = 1.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 151 total aligned reads displayed.

AATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑G‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCT  >  NC_000913/3627065‑3627210
                                                                            |                                                                        
aaTATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGc                                                                           <  2:4377349/76‑1 (MQ=255)
 agatCTAGAGTGATCGGGGTCAGAGCAACTGTTTTTCCATAATGCTGGCTCTCGCCCGCCAGTTGCGCGACAGGC‑g                                                                         <  1:57992/74‑1 (MQ=255)
  tatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑g                                                                       >  2:3634657/1‑76 (MQ=255)
  tatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑g                                                                       >  1:4676419/1‑76 (MQ=255)
  tatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑g                                                                       >  1:5483556/1‑76 (MQ=255)
  tagcGAGAGTGTTATTGTCCAGCGCAACGGTTTTTCCATAATGCTGGCTCCCGCCCGCCAGTTGCGCGACAGGC‑g‑g                                                                       <  2:3748966/73‑1 (MQ=255)
   atCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑gg                                                                      >  1:5188500/1‑75 (MQ=255)
   atCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑gg                                                                      >  2:2187089/1‑75 (MQ=255)
   atCGAGAGTGATATTGTTCAGCGCAACGGGTTTTCCATAATGCTGGCTCAACCCCGCCAGCTGCGCGCCcggc‑g‑gg                                                                      >  2:5203960/1‑75 (MQ=255)
    tCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGGCAGTTGCGCGACAGGC‑g‑gga                                                                     >  1:4102781/1‑74 (MQ=255)
    tCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑ggg                                                                     >  1:4386177/1‑74 (MQ=255)
    tCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑gga                                                                     >  2:179478/1‑74 (MQ=255)
    tCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑gga                                                                     <  1:1415264/76‑3 (MQ=255)
     cGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑ggac                                                                    >  2:2069717/1‑73 (MQ=255)
     cGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑ggac                                                                    >  2:515346/1‑73 (MQ=255)
          gTGATATTGTTCAGCGCAACGGTTTTGCCATAATGCTGGCTCACGCCCGCCAGATGCGCGACCGGCGG‑G‑ACgggga                                                               >  1:2619382/1‑74 (MQ=255)
           tGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAAc                                                              <  2:2193683/76‑1 (MQ=255)
             atatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGGAccc                                                            >  1:2228512/1‑75 (MQ=255)
             atatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAAccc                                                            >  2:1268392/1‑75 (MQ=255)
             atatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCa                                                            >  1:2148982/1‑76 (MQ=255)
              tatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑GCGGGAAcccg                                                           >  2:4439659/1‑74 (MQ=255)
               atTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGGACCAGt                                                          >  1:430069/1‑76 (MQ=255)
               atTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGt                                                          >  2:3598682/1‑76 (MQ=255)
                ttGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGtt                                                         >  1:4385082/1‑76 (MQ=255)
                ttGGTCGGCGCAGGGGTTTTTCCATAATGCGGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGtt                                                         <  2:963251/76‑1 (MQ=255)
                 tgtgCAGCGCAGCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTc                                                        <  1:2045581/76‑1 (MQ=255)
                    tCAGCGCATCGGTTTTTCCATAATGCTGTCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAg                                                     <  1:816986/76‑1 (MQ=255)
                    tCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAg                                                     <  2:3730763/76‑1 (MQ=255)
                     cAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGa                                                    >  2:4358189/1‑76 (MQ=255)
                       gcgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGCTCCCGATg                                                  >  2:4274234/1‑76 (MQ=255)
                        cgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGc                                                 >  1:1772657/1‑76 (MQ=255)
                         gcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCg                                                <  1:5386049/76‑1 (MQ=255)
                         gcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCCCGACAGGCGG‑G‑GCCGGAACCCGCTCCAGAGGcc                                                >  2:5808921/1‑75 (MQ=255)
                          cAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGTACCAGTTCCAGATGCgc                                               >  1:1061072/1‑75 (MQ=255)
                          cAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGt                                               >  2:1372781/1‑76 (MQ=255)
                          cAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCACGTCCAGAcgcgc                                               >  2:2093745/1‑75 (MQ=255)
                           aaCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTc                                              >  1:3106933/1‑76 (MQ=255)
                           aaCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTc                                              >  1:978901/1‑76 (MQ=255)
                           aaCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGGTCCAGATGCGTc                                              >  1:2578799/1‑76 (MQ=255)
                            aCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCa                                             <  2:5483555/76‑1 (MQ=255)
                            aCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCa                                             >  1:3336570/1‑76 (MQ=255)
                               ttttttCACTAGTGCTGGCTGCGCCCCTCGAGTTGGGCGACAGGCGG‑G‑TTGGGAACCAGTTCCAGATGCGTCATTg                                          <  2:4246063/75‑1 (MQ=255)
                               gTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTg                                          <  2:2734856/76‑1 (MQ=255)
                                tttttCCATAATGCTGGCTCCCGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGc                                         <  2:1136517/76‑1 (MQ=255)
                                tttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGc                                         <  2:703902/76‑1 (MQ=255)
                                 ttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCg                                        <  2:2338465/76‑1 (MQ=255)
                                 ttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGCTCCAGATGCGTCATTGCg                                        >  2:2817651/1‑76 (MQ=255)
                                   ttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCACTTCCAGATGCGCCATTCCGGc                                      >  2:5662045/1‑76 (MQ=255)
                                    tCCATAATGCTGGTTCACGCCCGCCGTTTTCGCGACAGGC‑G‑GTGCGGTAACCAGTTCCAGATGCGTCATTGTGGCa                                     <  1:3524966/76‑1 (MQ=255)
                                    tCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCCGTTCCAGATGCGTCATTGCCGCa                                     >  2:1379905/1‑76 (MQ=255)
                                     ccATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCaa                                    <  1:3598682/76‑1 (MQ=255)
                                     ccATAATGCTGGCTCACGCCCGCCAGTTGCGCCACAGGCGG‑G‑ACGGGAACCAGTCTCCGATGCGCCTGTGCGGcca                                    >  2:56110/1‑74 (MQ=255)
                                       aTAATGCGGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAAcc                                  <  2:2383022/76‑1 (MQ=255)
                                        tAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCt                                 <  2:4886792/76‑1 (MQ=255)
                                          aTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCCACCTca                               >  1:4720202/1‑76 (MQ=255)
                                          aTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGCTCCAGATGCGTCATTGCGGCAAACTcc                               >  1:844791/1‑75 (MQ=255)
                                           tGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcac                              >  1:272711/1‑76 (MQ=255)
                                             cTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca                            >  2:3506126/1‑76 (MQ=255)
                                             cTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca                            <  1:3175911/76‑1 (MQ=255)
                                             cTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca                            >  2:733053/1‑76 (MQ=255)
                                             cTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca                            >  1:4917119/1‑76 (MQ=255)
                                             cTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGACACCAGCTCCAGATGCGGCATTGCGCCAACCTcacca                            >  2:3513228/1‑76 (MQ=255)
                                              tGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCGACCTcaccac                           >  1:2898519/1‑76 (MQ=255)
                                              tGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcaccac                           <  1:2378112/76‑1 (MQ=255)
                                              tGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcaccac                           <  1:3759991/76‑1 (MQ=255)
                                              tGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcaccac                           >  1:4158854/1‑76 (MQ=255)
                                               gccTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACg                          <  1:4521232/74‑1 (MQ=255)
                                                  tCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAgg                       >  1:2050671/1‑76 (MQ=255)
                                                    ccgcccgccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtc                     <  1:888464/75‑1 (MQ=255)
                                                    ccgcccgccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtc                     <  1:1329307/75‑1 (MQ=255)
                                                    ccgcccgccAGGTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtc                     <  2:4674296/75‑1 (MQ=255)
                                                    aCGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtc                     <  1:1907276/76‑1 (MQ=255)
                                                     cgcccgccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcg                    <  1:2783530/76‑1 (MQ=255)
                                                      gcccgccACTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCCCACCCCGAGgtcgc                   >  2:4948559/1‑75 (MQ=255)
                                                       cccgccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcgtc                  >  1:4572280/1‑76 (MQ=255)
                                                       cccgccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcgtc                  >  1:4166998/1‑76 (MQ=255)
                                                          gccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAgg               >  1:3435425/1‑76 (MQ=255)
                                                          gccAGTGGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAgg               <  1:1650999/76‑1 (MQ=255)
                                                           ccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGc              <  1:3742782/76‑1 (MQ=255)
                                                           ccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGc              <  1:3912835/76‑1 (MQ=255)
                                                             cgTTGCGCGACAGGCGG‑G‑TCGGGAACCAGTTCCAGATGCTTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa            <  2:1788597/75‑1 (MQ=255)
                                                             aGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa            <  1:1164554/76‑1 (MQ=255)
                                                             aGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa            <  1:630913/76‑1 (MQ=255)
                                                             aGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa            <  1:4278810/76‑1 (MQ=255)
                                                              gtggcgcTACAGGC‑GTG‑ACGGGTGCCGTTGCCAGAGGCGTCCTTGCGGCAACCTCACCGCGAGGTCGTCAGGCCAc           <  1:97803/73‑1 (MQ=255)
                                                              gTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCAc           <  2:3106933/76‑1 (MQ=255)
                                                               ttGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACg          <  1:3189638/76‑1 (MQ=255)
                                                                tGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACgg         <  1:2658674/76‑1 (MQ=255)
                                                                tGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCACTGCGGCAACCTCACCACGAGGTCGTCAGGCCCCgg         >  1:2238237/1‑76 (MQ=255)
                                                                 gcgcGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGa        >  1:3036348/1‑76 (MQ=255)
                                                                  cgcgACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCCCGAGGTCGTCAGGCCACGGaa       >  2:1188047/1‑76 (MQ=255)
                                                                  cgcgACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCCCGAGGTCGCCAGGACACggca       >  2:568913/1‑74 (MQ=255)
                                                                   gcgACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGCAg      >  2:754881/1‑76 (MQ=255)
                                                                   gcgACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAg      <  2:1201301/76‑1 (MQ=255)
                                                                   gcgACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGGCGTCAGGCCACGGAAg      >  1:1856417/1‑76 (MQ=255)
                                                                    ggACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGt     <  2:2416104/75‑1 (MQ=255)
                                                                       cAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttct  >  2:2900950/1‑76 (MQ=255)
                                                                       cAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttct  >  2:2424568/1‑76 (MQ=255)
                                                                       cAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttct  <  2:2578799/76‑1 (MQ=255)
                                                                       cAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCCCACCACGAGGTCGTCAGGCCACGCACGttct  >  2:276629/1‑76 (MQ=255)
                                                                            |                                                                        
AATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑G‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCT  >  NC_000913/3627065‑3627210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A