Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F999 I1 R1
|
226 |
132.7 |
9745491 |
85.7% |
8351885 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,627,142 |
+G |
intergenic (‑24/+23) |
yhiH ← / ← yhiI |
putative ATP‑binding component of a transport system, fragment 1/putative membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,627,140 | 1 | . | G | 99.2%
| 349.5
/ ‑3.7
| 133 | intergenic (‑22/+25) | yhiH/yhiI | putative ATP‑binding component of a transport system, fragment 1/putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (77/55); total (77/56) |
| Fisher's exact test for biased strand distribution p-value = 4.21e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 147 total aligned reads displayed.
AATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑GGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCT > NC_000913/3627065‑3627210
|
aaTATCGAGAGTGATCTTGTACAGCGCCACGGTTTTTCCATAATTCTGTCTCCCTCCCGCCAGTTGCGCGACAGGc < 1:868294/76‑1 (MQ=255)
aaTATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGc < 1:3995708/76‑1 (MQ=255)
atatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g > 1:1713364/1‑76 (MQ=255)
tatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACcggc‑gg > 2:1021309/1‑76 (MQ=255)
tatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑gg < 1:2266492/76‑1 (MQ=255)
atCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑ggg < 1:1687901/76‑2 (MQ=255)
tCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑ggga > 1:4169188/1‑74 (MQ=255)
cGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑gggac > 2:1939104/1‑73 (MQ=255)
gagTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACGGGCGGGACggg > 1:2861187/1‑76 (MQ=255)
gagTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACggg > 1:3546550/1‑76 (MQ=255)
gagTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCAACAGGCGGGACggg < 1:4862452/76‑1 (MQ=255)
agTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGcgggacggga < 1:4119927/76‑1 (MQ=255)
agTGATATTGTACAGCGCAACGTTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGcgggacggga < 2:4419580/76‑1 (MQ=255)
gTGATATTGTTCAGCGCAAGGGTTTTTCCATAATGCGGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGaa < 2:180545/76‑1 (MQ=255)
gATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAAcc < 1:3311463/76‑1 (MQ=255)
gATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACACGCGGGCCGGGAAcc > 2:515563/1‑76 (MQ=255)
atatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCa < 1:3478267/76‑1 (MQ=255)
atTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGt > 2:3975009/1‑76 (MQ=255)
tGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTc < 1:1897114/76‑1 (MQ=255)
tGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTc > 1:3966308/1‑76 (MQ=255)
gTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCCGTGcc > 1:451407/1‑76 (MQ=255)
ttCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCCGTTccc > 2:4683122/1‑75 (MQ=255)
ttCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTccc > 2:3245267/1‑75 (MQ=255)
ttCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCa > 1:1967865/1‑76 (MQ=255)
tgaGCGCAAGGGGTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAg < 2:2408811/74‑1 (MQ=255)
tCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTcccg > 1:2347343/1‑74 (MQ=255)
gcgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGACAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATg > 2:2168560/1‑76 (MQ=255)
cgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCCGTTCCAGATGc > 1:2706578/1‑76 (MQ=255)
gcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGGAGCAGTTCCAGATGCg > 1:1800900/1‑76 (MQ=255)
gcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCg > 1:4836164/1‑76 (MQ=255)
aCGGTTTTTCCATAATGCTGGCTCACGCCCGCCCGTTGCGCGACAGGCGGGACGGGGACCAGTTCCAGATGCGTct > 2:2557911/1‑75 (MQ=255)
aCGGTTTTTCCATAAGGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCa < 1:1154392/76‑1 (MQ=255)
cGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCCGTTCCAGATGCGTCAt > 2:3672184/1‑76 (MQ=255)
cGGGTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCAt < 2:2362208/76‑1 (MQ=255)
ggTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCAtt > 2:767887/1‑76 (MQ=255)
ggTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCCCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCCtt > 2:2553123/1‑76 (MQ=255)
tttttCCATAATGCTGGCTCGCGCCCGCCCGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGc < 2:4241204/76‑1 (MQ=255)
tttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGc < 2:2646623/76‑1 (MQ=255)
tttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGc < 1:737232/76‑1 (MQ=255)
gttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGAAGGGAACCAGTTCCAGATGCGTCATTGc < 2:2657261/75‑1 (MQ=255)
ttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCg < 2:3144198/76‑1 (MQ=255)
tttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCgg < 1:2745209/76‑1 (MQ=255)
ttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGc > 1:2062244/1‑76 (MQ=255)
tgccATAATGCTGGCTCACGCCCGCCAGTTGCGCGACATGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGc < 1:4344507/74‑1 (MQ=255)
cATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAAc < 1:391326/76‑1 (MQ=255)
aTAATGGTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAAcc < 2:4529242/76‑1 (MQ=255)
aTAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAAcc > 1:4342308/1‑76 (MQ=255)
tAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGGCGGGAACCAGGTCCAGAAGCGGCCGTCCGGCAACCt > 2:124757/1‑76 (MQ=255)
tAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCt > 1:4602830/1‑76 (MQ=255)
aaTGCTGGCTCCCGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTc < 1:4234101/76‑1 (MQ=255)
aaTGCTGGCTCACGCCCGCCAGTTGCGCGACCGGCGGGACGGGCCCCAGTTCCCGATGCGTCCTCGCGGCCAcccc > 2:6426/1‑74 (MQ=255)
aTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTca < 2:4517429/76‑1 (MQ=255)
tGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcac > 1:707139/1‑76 (MQ=255)
tGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCCcac > 2:1713575/1‑76 (MQ=255)
gcgggCTCGCGGCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAGCCTcacc < 2:4104072/73‑1 (MQ=255)
gCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTc < 1:4529067/59‑1 (MQ=255)
gCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTc > 2:4529067/1‑59 (MQ=255)
gCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacc < 1:599320/76‑1 (MQ=255)
cTGGCTCACGGCCGCCAGGTGCGGGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca < 2:3818014/76‑1 (MQ=255)
tGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcaccac < 1:836485/76‑1 (MQ=255)
ggCTCTCGCTCGCCAGTTGCGCGGCAGGCGGGCCGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACg < 2:536614/76‑1 (MQ=255)
gCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGCTCCGTCCTTGCGCCAACCTcaccacca > 2:4606717/1‑74 (MQ=255)
cTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAg < 1:3192005/76‑1 (MQ=255)
tCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAgg > 1:232820/1‑76 (MQ=255)
tCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAgg > 1:1682415/1‑76 (MQ=255)
tCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAgg > 1:1248091/1‑76 (MQ=255)
tCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAgg > 1:467468/1‑76 (MQ=255)
ccACGCCCGCTATTTACGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAgg < 1:94146/75‑1 (MQ=255)
cACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgt > 1:2263490/1‑76 (MQ=255)
ccgcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtc < 1:4535122/75‑1 (MQ=255)
aCGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtc > 2:1438534/1‑76 (MQ=255)
cgcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcg > 1:1973968/1‑76 (MQ=255)
gcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcgt > 1:2486042/1‑76 (MQ=255)
gcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCCCACCCCGAGggcgt > 2:1989499/1‑76 (MQ=255)
cccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcgtc < 1:4084220/76‑1 (MQ=255)
cccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcgtc > 1:43135/1‑76 (MQ=255)
cccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcgtc < 1:204044/76‑1 (MQ=255)
cgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCCACCTCACCACCAGGTCGTCAg > 2:3884023/1‑76 (MQ=255)
cgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCCCGAGGCCGCCAg > 2:1063079/1‑76 (MQ=255)
gccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAgg > 2:2340038/1‑76 (MQ=255)
gccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAgg < 1:1408904/76‑1 (MQ=255)
gccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAgg > 1:4791267/1‑76 (MQ=255)
gccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGCCGTCAgg > 2:3994618/1‑76 (MQ=255)
ccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGc > 1:3829465/1‑76 (MQ=255)
cAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGcc > 1:1303180/1‑76 (MQ=255)
cgTTGCGCGACCGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa < 2:2183905/75‑1 (MQ=255)
cgTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa < 2:4130184/75‑1 (MQ=255)
aGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa > 2:2815805/1‑76 (MQ=255)
aGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa > 1:2331190/1‑76 (MQ=255)
gTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCAc > 1:2809242/1‑76 (MQ=255)
gTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGCCGTCAGGcccc > 1:3646771/1‑74 (MQ=255)
ttGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACg < 1:4171614/76‑1 (MQ=255)
gcgcGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGa > 1:3300735/1‑76 (MQ=255)
gcgcGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGCCAGGCCACGGa > 2:1477324/1‑76 (MQ=255)
cgcgACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGaa > 2:2860351/1‑76 (MQ=255)
gcgACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAg < 1:2597204/76‑1 (MQ=255)
gACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGCGGCCGTCAGGCCCCGGAAGtc > 2:1215781/1‑75 (MQ=255)
gACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCCCGGAAGtt > 2:4458210/1‑76 (MQ=255)
gACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGtt > 1:2959970/1‑76 (MQ=255)
cAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttct < 1:4698327/76‑1 (MQ=255)
|
AATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑GGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCT > NC_000913/3627065‑3627210
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
