Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F999 I1 R1 225 156.4 11709729 83.8% 9812752 75.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,930,568 +G intergenic (+66/‑373) kup → / → rbsD low affinity potassium transport system/RbsD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,930,5671.G98.6% 389.5 / ‑0.8 142intergenic (+65/‑374)kup/rbsDlow affinity potassium transport system/RbsD
Reads supporting (aligned to +/- strand):  ref base . (1/1);  new base G (66/74);  total (67/75)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01

Only 100 of 152 total aligned reads displayed.

ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATG  >  NC_000913/3930493‑3930637
                                                                            |                                                                      
atGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑g                                                                       <  2:239942/76‑1 (MQ=255)
atGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑g                                                                       <  1:4164901/76‑1 (MQ=255)
 tGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑gg                                                                      <  2:1787936/76‑2 (MQ=255)
 tGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑gg                                                                      <  2:3215730/76‑2 (MQ=255)
  gTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑ggg                                                                     >  1:832091/1‑74 (MQ=255)
  gTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑ggc                                                                     <  2:2677662/76‑3 (MQ=255)
   tCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑ggcg                                                                    <  1:992584/76‑4 (MQ=255)
   tCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑ggcg                                                                    <  2:892719/76‑4 (MQ=255)
      aTAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCgaga                                                                  <  2:4729171/76‑1 (MQ=255)
        agcgtccgtcGGGTACAGATTGATCAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGaaa                                                                <  1:43371/74‑1 (MQ=255)
        aaCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGaaa                                                                >  1:378452/1‑76 (MQ=255)
        aaCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGaaa                                                                <  1:153522/76‑1 (MQ=255)
        aaCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGaaa                                                                >  1:5637372/1‑76 (MQ=255)
        aaCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGaaa                                                                >  2:3633828/1‑76 (MQ=255)
         aCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAAc                                                               <  1:3599909/76‑1 (MQ=255)
         aCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAAc                                                               <  2:2705550/76‑1 (MQ=255)
         aCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAAc                                                               <  1:837727/76‑1 (MQ=255)
          cgtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACg                                                              <  2:1985008/76‑1 (MQ=255)
           gtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGc                                                             >  1:3659408/1‑76 (MQ=255)
           gtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGc                                                             >  1:1010674/1‑76 (MQ=255)
           gtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGc                                                             >  2:4693132/1‑76 (MQ=255)
            tccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGCGAAACGcc                                                            >  2:3017550/1‑76 (MQ=255)
               gtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCaaa                                                         <  2:1522944/76‑1 (MQ=255)
                tcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAAc                                                        <  1:894855/76‑1 (MQ=255)
                 cGGGTACAGATTGACCAGCTGTCGCGCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCCAACg                                                       <  2:2187533/76‑1 (MQ=255)
                 cGGGTACAGATTGAACAACTGTCGCCTACTTTCTGGCGCGTGGTGGCAAGTTATTGT‑TGGCGAGAAACGCCAAACg                                                       <  2:2132986/76‑1 (MQ=255)
                  gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGt                                                      >  2:2544276/1‑76 (MQ=255)
                   ggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTa                                                     <  1:5539509/76‑1 (MQ=255)
                      aCAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTagaa                                                  >  1:4012752/1‑76 (MQ=255)
                       cAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTagaag                                                 >  2:3865906/1‑76 (MQ=255)
                       cAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTagaag                                                 >  1:4803740/1‑76 (MQ=255)
                        aGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTagaaga                                                <  1:742302/76‑1 (MQ=255)
                         gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACg                                                       <  1:5784802/68‑1 (MQ=255)
                         gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAgaagaa                                               <  1:3986541/76‑1 (MQ=255)
                         gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAgaagaa                                               <  2:142408/76‑1 (MQ=255)
                          aTTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGaagaag                                              <  1:1360068/76‑1 (MQ=255)
                          aTTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGaagaag                                              >  1:5242855/1‑76 (MQ=255)
                           ttGCACATCTGTCGCCCACTTTCTGGCGCGTGGTGGCACGTTATGGT‑TGGCGAGAACCGCCAAACGTAGAAGACGt                                             <  2:4246382/76‑1 (MQ=255)
                           ttGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGt                                             >  2:2788304/1‑76 (MQ=255)
                            tGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCGAAACGTAGAAGAAGtt                                            <  1:3448816/76‑1 (MQ=255)
                            tGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGtt                                            <  1:1740568/76‑1 (MQ=255)
                            tGAACAACTGTCGCCCACGTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCGAAACGTAGAAGAAGtg                                            <  1:3481375/76‑2 (MQ=255)
                             gAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGttt                                           >  1:4833862/1‑76 (MQ=255)
                             gAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGttt                                           >  2:4078573/1‑76 (MQ=255)
                               acaacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTc                                         >  2:5617385/1‑76 (MQ=255)
                                caacTGTCGCGCACTTACTGGCGCGTGGTGGCAAGTTATGTT‑CGGCTCGAAACGCCAAACTTAGACTAAGTTTTcc                                        <  1:2558662/76‑1 (MQ=255)
                                caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc                                        <  2:2498387/76‑1 (MQ=255)
                                caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc                                        >  2:5006602/1‑76 (MQ=255)
                                caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc                                        >  1:1540886/1‑76 (MQ=255)
                                 aacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCa                                       <  2:2274500/76‑1 (MQ=255)
                                  acTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAc                                      >  1:2106333/1‑76 (MQ=255)
                                  acTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAc                                      >  2:3098319/1‑76 (MQ=255)
                                  acTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAc                                      <  2:1860812/76‑1 (MQ=255)
                                    tGTCGCCCACGTTCTGGCTCGGGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTGCCACCg                                    <  2:1723221/76‑1 (MQ=255)
                                     gTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCCCCGc                                   <  1:77293/76‑1 (MQ=255)
                                      tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGCACACCCCCACAAGAAGAAGAAGATTTCCACCGcc                                  >  2:1587366/1‑75 (MQ=255)
                                      tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt                                  <  2:3052516/76‑1 (MQ=255)
                                      tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt                                  <  2:5783467/76‑1 (MQ=255)
                                      tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt                                  >  2:4054173/1‑76 (MQ=255)
                                         cccACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCg                               >  1:5270563/1‑76 (MQ=255)
                                         cccACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCg                               <  1:2249176/76‑1 (MQ=255)
                                          ccACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCCCCGCTGCgg                              <  1:4398460/76‑1 (MQ=255)
                                           cACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGt                             >  1:2358793/1‑76 (MQ=255)
                                           cACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGt                             >  1:4570275/1‑76 (MQ=255)
                                           cACTGTCTGGCGCGTGGTGGCAAGTTATGGC‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCGGCGGt                             >  1:4927599/1‑76 (MQ=255)
                                            aCTTTCTGGCGCGTGGTGGCACGTTATGGT‑TGGCGAGAAACGCCAAACATAGAAGAAGTTTTCCACCGCTGCGGTc                            >  2:5227836/1‑76 (MQ=255)
                                            aCTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTc                            >  2:659451/1‑76 (MQ=255)
                                            aCTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTc                            >  1:4201087/1‑76 (MQ=255)
                                            aCTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTc                            <  1:5533171/76‑1 (MQ=255)
                                              tttCTGGCGCGTGGTGGCCAGTTATGGT‑TGGCGAGGCCCGCTGATCGTAGAAGAAGTTTTCCTCGGCTGCGGTCtt                          <  2:5257011/76‑2 (MQ=255)
                                              tttCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg                          <  2:4892785/76‑1 (MQ=255)
                                              tttCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg                          >  1:5366283/1‑76 (MQ=255)
                                              tttCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg                          <  2:1675859/76‑1 (MQ=255)
                                               ttCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTgg                         >  1:2927705/1‑76 (MQ=255)
                                                 cgggCGGGGGGTGGCAGGTTATGGTGG‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGaa                       <  2:5709534/74‑1 (MQ=255)
                                                 cTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGaa                       <  2:5576600/76‑1 (MQ=255)
                                                  tGGCGCGTGGTGGCAAGTTATGGT‑TGGCTAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAg                      >  1:2943052/1‑76 (MQ=255)
                                                    gcgcGTGGTGGCAGGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGa                    <  1:2177454/76‑1 (MQ=255)
                                                    gcgcGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGa                    <  2:2439815/76‑1 (MQ=255)
                                                    gcgcGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGa                    >  2:3865678/1‑76 (MQ=255)
                                                     cgcgTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAt                   >  1:585337/1‑76 (MQ=255)
                                                      gcgTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAtt                  >  1:2734062/1‑76 (MQ=255)
                                                      gcgTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAtt                  >  1:5351490/1‑76 (MQ=255)
                                                       cgTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTa                 <  2:1710859/76‑1 (MQ=255)
                                                        gtggtgGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTaa                >  1:4991335/1‑76 (MQ=255)
                                                         tggtggCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAg               >  2:5651003/1‑76 (MQ=255)
                                                          ggtggCAAGTTATGGT‑TGGCGAGACACGCCCAACGTAGACGAAGTTTTCCACCGCTTCGTTCTGGCATGATTacgc              <  2:43249/76‑4 (MQ=255)
                                                           gtggCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGtt             >  1:1244872/1‑76 (MQ=255)
                                                             ggCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGc           <  2:1267558/76‑1 (MQ=255)
                                                             ggCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGc           >  1:5691952/1‑76 (MQ=255)
                                                                aaGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCgg        >  2:2353719/1‑76 (MQ=255)
                                                                aaGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCgg        >  2:5605763/1‑76 (MQ=255)
                                                                aaGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCgg        >  1:1804975/1‑76 (MQ=255)
                                                                aaGTTATGGT‑TGGCGAGAAACACCAAACGTAGAAGAAGTTTTCCACCGCTGCGCTCTGGAAGGATCAAGTTGCCgg        >  2:4646047/1‑76 (MQ=255)
                                                                 aGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGga       <  2:2815547/76‑1 (MQ=255)
                                                                   ttATGGT‑TGGCGAGAAACCCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatg     >  1:3349652/1‑76 (MQ=255)
                                                                    tATGGT‑TGGCGAGAAACGCCCAACGTAGAGGAAGCTCTCCACCGCTGCGGTGCGGCAGGCATAAGCTGGCGgatga    >  2:607472/1‑76 (MQ=255)
                                                                    tATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatga    >  1:1100513/1‑76 (MQ=255)
                                                                      tGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCCCCGCTGCGGTCTGGAAGGATTAAGTTGCCGGatgatg  <  2:1370013/76‑1 (MQ=255)
                                                                      tGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGatgatg  <  2:4991334/76‑1 (MQ=255)
                                                                            |                                                                      
ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATG  >  NC_000913/3930493‑3930637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A