Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F999 I1 R1 225 156.4 11709729 83.8% 9812752 75.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,930,677 +G intergenic (+175/‑264) kup → / → rbsD low affinity potassium transport system/RbsD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,930,6761.G97.6% 326.6 / 1.5 126intergenic (+174/‑265)kup/rbsDlow affinity potassium transport system/RbsD
Reads supporting (aligned to +/- strand):  ref base . (2/1);  new base G (67/55);  total (69/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 143 total aligned reads displayed.

CCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑C‑GCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTG  >  NC_000913/3930601‑3930745
                                                                             |                                                                     
ccGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑c                                                                        <  1:4939002/76‑1 (MQ=255)
ccGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑c                                                                        >  1:1478189/1‑76 (MQ=255)
ccGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑c                                                                        >  1:4868133/1‑76 (MQ=255)
ccGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑c                                                                        >  2:5063200/1‑76 (MQ=255)
 cGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑C‑g                                                                      <  2:1513737/76‑1 (MQ=255)
  gCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑C‑gg                                                                     >  2:4123484/1‑75 (MQ=255)
  gCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑C‑gg                                                                     <  1:3357659/76‑2 (MQ=255)
  gCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑C‑gg                                                                     >  2:4034192/1‑75 (MQ=255)
   cTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑C‑ggc                                                                    >  1:1531757/1‑74 (MQ=255)
    tGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑C‑ggta                                                                   >  1:327568/1‑73 (MQ=255)
    tGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑C‑ggca                                                                   <  2:2248934/76‑4 (MQ=255)
    tGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑C‑ggca                                                                   >  1:272768/1‑73 (MQ=255)
    tGCGGTCTGGAAGGATTAAGTGGCCGGAAGATGGAAAACACCTTCATTATGTCGCATCAGTCGTTGATCCT‑C‑ggca                                                                   >  2:4346496/1‑73 (MQ=255)
       gggcTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAAc                                                                 <  2:5432795/73‑1 (MQ=255)
       ggTCTGGAAGGATTGAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAAc                                                                 >  1:4408355/1‑76 (MQ=255)
       ggTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAAc                                                                 <  2:2417311/76‑1 (MQ=255)
       ggTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAAc                                                                 <  2:1687327/76‑1 (MQ=255)
       ggTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAAc                                                                 >  2:1577106/1‑76 (MQ=255)
       ggTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAAc                                                                 <  2:1244872/76‑1 (MQ=255)
        gTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACg                                                                <  1:3066250/76‑1 (MQ=255)
          cTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGcc                                                              >  2:3912750/1‑76 (MQ=255)
          cTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGcc                                                              <  2:4291739/76‑1 (MQ=255)
           tGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAAc                                                                 <  2:1880066/72‑1 (MQ=255)
              aaGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTg                                                          <  2:3635371/76‑1 (MQ=255)
              aaGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTg                                                          >  2:3821675/1‑76 (MQ=255)
                ggATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGt                                                        <  2:5745593/76‑1 (MQ=255)
                 gATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGtt                                                       >  2:5148648/1‑75 (MQ=255)
                 gATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGtt                                                       >  2:5162590/1‑75 (MQ=255)
                 gATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTa                                                       >  1:2915194/1‑76 (MQ=255)
                 gATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTa                                                       <  1:1577106/76‑1 (MQ=255)
                  aTTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGCGGTAt                                                      >  2:2634538/1‑76 (MQ=255)
                   ttAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGCGTCGTTGATCCT‑CGGCAAACGCCCGTGGTAtt                                                     >  2:3104248/1‑76 (MQ=255)
                    tAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCACACGCCCGTGGTAttt                                                    >  2:2062773/1‑76 (MQ=255)
                    tAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTAttt                                                    >  1:1988076/1‑76 (MQ=255)
                    tAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTAttt                                                    >  2:2043529/1‑76 (MQ=255)
                      aGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGc                                                  <  2:766361/76‑1 (MQ=255)
                       gTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCg                                                 <  1:3827646/76‑1 (MQ=255)
                         tGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTc                                               <  1:843024/76‑1 (MQ=255)
                          gCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCt                                              >  2:2987882/1‑76 (MQ=255)
                           ccGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTg                                             <  1:3182785/76‑1 (MQ=255)
                            cGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTgc                                            <  2:1304365/76‑1 (MQ=255)
                            cGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTgc                                            >  1:5034535/1‑76 (MQ=255)
                            cGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTgc                                            >  1:3307016/1‑76 (MQ=255)
                             ggATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAAc                                                                 <  1:1183308/54‑1 (MQ=255)
                             ggATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAAc                                                                 >  2:1183308/1‑54 (MQ=255)
                              gatgagGAAAACCTCCTCATTTATGTCGAATTGGTCGTTGATCCTGG‑GCAAGTGCCCGTGGTATTTGCGTCTgcgc                                          <  1:2211092/76‑1 (MQ=255)
                               atgttgGAAAGCTCCTCCTTAACGCCGGCGGAGTCGTTGATCCG‑CGGCAAACGCCCGTGGTATTTGCGTCTGcgcg                                         >  2:4929668/1‑76 (MQ=255)
                               atgatgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGCCTGcgcg                                         >  2:5646478/1‑76 (MQ=255)
                                tgatgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTTTTTGCGTCTGcgcgc                                        >  2:5655812/1‑75 (MQ=255)
                                tgatgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCgg                                        <  1:5033991/76‑1 (MQ=255)
                                tgatgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCgg                                        >  1:5667926/1‑76 (MQ=255)
                                 gatgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGc                                       >  1:2558898/1‑76 (MQ=255)
                                 gatgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGc                                       >  1:5801326/1‑76 (MQ=255)
                                  atgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCa                                      >  2:2477309/1‑76 (MQ=255)
                                  atgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCa                                      <  1:4095714/76‑1 (MQ=255)
                                   tgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCaa                                     >  1:3692838/1‑76 (MQ=255)
                                   tgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCaa                                     >  1:4673195/1‑76 (MQ=255)
                                   tgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCaa                                     <  1:3754923/76‑1 (MQ=255)
                                   tgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCaa                                     >  2:1876804/1‑76 (MQ=255)
                                     gAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGCCTGCGCGGCAAGc                                   >  2:3347533/1‑76 (MQ=255)
                                      aaaCCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCt                                  <  1:5470955/76‑1 (MQ=255)
                                       agcctcctTCTTTATTTCTCATGAGTCGTTGATCCT‑CGGCAATCGCCCGTGGTTTTTGCGTCTGCGCGGTAAGCtt                                 <  2:613118/74‑2 (MQ=255)
                                        aCCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGt                                <  2:3307016/76‑1 (MQ=255)
                                        aCCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGCATTTGCGTCTGCGCGGCAAGCTGt                                >  2:1395047/1‑76 (MQ=255)
                                          ctcctTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTAc                              >  2:3050163/1‑76 (MQ=255)
                                          ctcctTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTAc                              >  1:3702380/1‑76 (MQ=255)
                                           tcctTCTTTCTGCCGCCTGAGGCGTTAATCAT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCACGCTGTACt                             <  1:3696419/76‑1 (MQ=255)
                                           tcctTCTTTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACt                             >  2:5381906/1‑76 (MQ=255)
                                             cttcttTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtg                           >  1:1945165/1‑76 (MQ=255)
                                             cttcttTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtg                           >  2:2768759/1‑76 (MQ=255)
                                             cttcttTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtg                           <  2:327568/76‑1 (MQ=255)
                                              ttcttTATGTCGCGTGAGTCGTTGAGCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgc                          <  2:2369731/76‑1 (MQ=255)
                                              ttcttTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgc                          >  1:853797/1‑76 (MQ=255)
                                              ttcttTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgc                          >  2:311238/1‑76 (MQ=255)
                                              ttcttTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgc                          <  1:5077912/76‑1 (MQ=255)
                                               tcttTATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgct                         >  1:4037391/1‑76 (MQ=255)
                                                 tttATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgctgc                       >  1:14189/1‑76 (MQ=255)
                                                 tttATGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgctgc                       <  2:487027/76‑1 (MQ=255)
                                                  ttATGTCGCATGAGTCGTTGATCCT‑CGGTAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgctgct                      >  2:1097714/1‑76 (MQ=255)
                                                     tGTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCa                   <  1:5543749/76‑1 (MQ=255)
                                                      gTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCACGCTGTACTTGCTGCTGCaa                  >  2:1978835/1‑76 (MQ=255)
                                                      gTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCaa                  >  1:3374548/1‑76 (MQ=255)
                                                      gTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCaa                  >  2:3176064/1‑76 (MQ=255)
                                                      gTCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCaa                  >  2:5112369/1‑76 (MQ=255)
                                                       tCGCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAAc                 >  1:1878230/1‑76 (MQ=255)
                                                        cgcgTGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACg                <  2:378452/76‑1 (MQ=255)
                                                         gCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGt               >  1:60457/1‑76 (MQ=255)
                                                         gCATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGt               <  1:3912751/76‑1 (MQ=255)
                                                          cATGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTa              <  1:3865907/76‑1 (MQ=255)
                                                           aTGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTCGCTGCTGCACCGGaa             >  2:526419/1‑76 (MQ=255)
                                                            tgcgTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAAt            <  1:3104248/73‑1 (MQ=255)
                                                            tGAGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAAt            <  1:311238/76‑1 (MQ=255)
                                                            tGAGTCGTTGATCCT‑CAGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAAt            <  1:1625622/76‑1 (MQ=255)
                                                              aGTCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATgc          <  1:4558631/76‑1 (MQ=255)
                                                               gTCGTTGATCCT‑CGGCAAAAGCCCGTGGGATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAAtcac         >  2:4977874/1‑73 (MQ=255)
                                                                tCGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTCCAACGTACTgcgc        >  2:74105/1‑76 (MQ=255)
                                                                 cGTTGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCt       <  2:2531806/76‑1 (MQ=255)
                                                                   ttGATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGc     >  1:5836815/1‑76 (MQ=255)
                                                                     gATCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGt   <  2:1338365/76‑1 (MQ=255)
                                                                      aTCCT‑CGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTg  <  1:5672457/76‑1 (MQ=255)
                                                                             |                                                                     
CCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCT‑C‑GCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTG  >  NC_000913/3930601‑3930745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A