Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F999 I1 R1
|
226 |
132.7 |
9745491 |
85.7% |
8351885 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,950,557 |
2 bp→GC |
coding (451‑452/930 nt) |
ilvE → |
branched‑chain amino‑acid aminotransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,950,557 | 0 | C | G | 100.0%
| 279.4
/ NA
| 111 | R151A (CGA→GCA) | ilvE | branched‑chain amino‑acid aminotransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (59/52); total (59/52) |
| * | NC_000913 | 3,950,558 | 0 | G | C | 100.0%
| 296.3
/ NA
| 111 | R151A (CGA→GCA) | ilvE | branched‑chain amino‑acid aminotransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (59/52); total (59/52) |
Only 100 of 111 total aligned reads displayed.
GGAGCGTATCTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCACGACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCCTGCTGGTGGGTAGCG > NC_000913/3950488‑3950626
||
ggAGCGTATCTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCaa > 2:871988/1‑76 (MQ=255)
gCGTATCTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAaca < 1:1675131/76‑1 (MQ=255)
tATCTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCa < 1:4603936/76‑1 (MQ=255)
aTCTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCAt < 1:1899566/76‑1 (MQ=255)
tCTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATc < 2:3067976/76‑1 (MQ=255)
cTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGCACCGCGCAGCCCCAAACACCATcc < 2:1144837/76‑1 (MQ=255)
cTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATcc > 1:4275379/1‑76 (MQ=255)
cTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATcc > 2:2536743/1‑76 (MQ=255)
cTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATcc < 1:2349242/76‑1 (MQ=255)
cTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTCTCCTCCTGGAACCGCGCAGCACCAAACACCATcc > 1:1933823/1‑76 (MQ=255)
ggggAGCAGAAGCGCTGGAGCAGGAGTGCGATGCGCTGGTTTCCTCCCGGTACCGCGCAGCACCAAACACCATccc < 2:4824556/75‑1 (MQ=255)
gggCGCAGAAGCGCTGGAGCAGGTGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCg < 1:1544951/76‑1 (MQ=255)
gggCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCg < 1:2072359/76‑1 (MQ=255)
gggCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCg > 1:3649137/1‑76 (MQ=255)
gcgcAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAc < 1:3007683/76‑1 (MQ=255)
gcgcAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAc > 1:3200187/1‑76 (MQ=255)
gcgcAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAc < 1:2874860/76‑1 (MQ=255)
gcgcAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAc < 1:2523730/76‑1 (MQ=255)
gcgcAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAc < 1:1557671/76‑1 (MQ=255)
cgcAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAcg < 2:2353842/76‑1 (MQ=255)
gcAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAcgg > 1:1577259/1‑76 (MQ=255)
gcAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAcgg > 1:2273999/1‑76 (MQ=255)
cAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAcggc > 1:383911/1‑76 (MQ=255)
cAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAcggc > 2:4613265/1‑76 (MQ=255)
aGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAcggcg < 2:2042887/76‑1 (MQ=255)
aGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAcggcg < 2:1084024/76‑1 (MQ=255)
aGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAcggcg > 1:68758/1‑76 (MQ=255)
gAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAcggcgg > 1:2664104/1‑76 (MQ=255)
gAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGAcggcgg < 1:4613265/76‑1 (MQ=255)
aaGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACggcggc > 1:362401/1‑76 (MQ=255)
gcgcTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCaa > 2:1374457/1‑76 (MQ=255)
gcgcTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCaa > 1:3845394/1‑76 (MQ=255)
gcgggAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCaaaa < 2:4844095/73‑1 (MQ=255)
gcgggAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCaaaa < 2:415558/73‑1 (MQ=255)
gcTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCaaag > 1:3699422/1‑75 (MQ=255)
gcTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCaaaa > 2:1389072/1‑76 (MQ=255)
gcTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCaaaa > 1:4342227/1‑76 (MQ=255)
cTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACTATCCCGACGGCGGCAAAAg > 1:1597859/1‑76 (MQ=255)
cTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAg > 2:1739052/1‑76 (MQ=255)
tGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCTAAAGc > 2:3416404/1‑76 (MQ=255)
tGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGc < 2:3072846/76‑1 (MQ=255)
tGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGc > 2:3755230/1‑76 (MQ=255)
tGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACCGCCGCAAAAGc > 2:2017855/1‑76 (MQ=255)
nggAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGc > 2:2447609/2‑76 (MQ=255)
ggAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCCAAAGcc > 2:4677535/1‑76 (MQ=255)
ggAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGcc > 1:2663830/1‑76 (MQ=255)
gAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCg < 1:3730066/76‑1 (MQ=255)
aGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCgg < 1:3042310/76‑1 (MQ=255)
gcgggggATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCggt < 2:1206271/73‑1 (MQ=255)
gCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCggt < 2:3703479/76‑1 (MQ=255)
cAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCggtg > 2:849501/1‑76 (MQ=255)
aGGGGGTCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCggtgg < 2:4558494/76‑1 (MQ=255)
ggggATCTCTGCGATGGTTTCCGCCTGGAACCGCACAGCACCAAACACCATCCCGACGTCGGCAAAAGCCggtggt < 2:3794440/76‑1 (MQ=255)
gggATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTa < 2:2353400/76‑1 (MQ=255)
gggATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTa < 2:2476416/76‑1 (MQ=255)
ggATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTaa > 1:3162999/1‑76 (MQ=255)
gctCGATGCGCTGATTGCCTCCTGGAGCCGCTCAGCACCAAACACCATCCCTACGGCGGCAAAAGCCGGTGGTAAc < 1:2563128/74‑1 (MQ=255)
gATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAAc > 1:2910800/1‑76 (MQ=255)
gATCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGCGGTCAc > 2:3647271/1‑76 (MQ=255)
aTCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACt > 1:3353345/1‑76 (MQ=255)
tCGATGCGATGGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTa > 1:2395556/1‑76 (MQ=255)
cgatgcgatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACCAc > 2:697390/1‑76 (MQ=255)
gatgcgatgGTTTCCTCCTCGAACCGCGCAGCACCAAACACCACCCCGACGGCGGCAACAGCAGGCGTGAACTAcc > 2:1739670/1‑76 (MQ=255)
gtgcgaggGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACct < 2:1539492/75‑1 (MQ=255)
atgcgatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACct < 1:2473620/76‑1 (MQ=255)
tgcgatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACctc > 1:3134474/1‑76 (MQ=255)
gcgatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCACAAGCCGGTGGTAACTACctct > 1:2690692/1‑76 (MQ=255)
cgatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACctctc > 1:39029/1‑76 (MQ=255)
cgatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACctctc < 2:2720012/76‑1 (MQ=255)
cgatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACctctc > 2:2099722/1‑76 (MQ=255)
cgatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACctctc > 1:3337733/1‑76 (MQ=255)
gatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTCACTCCctctct > 2:1450141/1‑76 (MQ=255)
gatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACctctct > 1:2370340/1‑76 (MQ=255)
gatgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGGAACTACctctct > 1:1074281/1‑76 (MQ=255)
atgGTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGCAACTACCTCTCtt > 2:2324084/1‑76 (MQ=255)
atgGTTTCCCCCTGGAACCGCGCAGCACCAAACACCACCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCtt < 2:1159649/76‑1 (MQ=255)
tgGTTCCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTc < 1:4529444/76‑1 (MQ=255)
gggTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTc < 2:1667862/75‑1 (MQ=255)
ggTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTcc < 1:2369232/76‑1 (MQ=255)
gTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTccc < 1:1077637/76‑1 (MQ=255)
gTTTCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTccc > 1:1657733/1‑76 (MQ=255)
gTTTCCTCCGGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTccc < 2:1125585/76‑1 (MQ=255)
tttCCTCCTGGAACCGCGCAGCACCAAACCCCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCct < 1:2829833/76‑1 (MQ=255)
tttCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCct < 1:889260/76‑1 (MQ=255)
tttCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCct > 1:1966155/1‑76 (MQ=255)
ttCCTCCTGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGCAACTACCTCTCTTCCctg > 2:800024/1‑76 (MQ=255)
tcctccGGGACCCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCctgc < 2:1848171/76‑1 (MQ=255)
cctcctGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCctgct < 1:3746752/76‑1 (MQ=255)
cctcctGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCctgct > 1:1831480/1‑76 (MQ=255)
ctcctGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCccgctg > 2:1034653/1‑76 (MQ=255)
ccctGGACCCGCGCAGCCCCAAACACCACCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCCTGCtgg < 1:621936/75‑1 (MQ=255)
cctGGAACCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCCTGCtggg > 1:924844/1‑75 (MQ=255)
ggAACCGCGCAGCACCAAACACCATCCCGACGGACGCAAAAGCCGGCCGGAACTACCTCTCTTCCctgctgctgtg > 2:4080399/1‑74 (MQ=255)
gacccGCGCAGCACCAAACACCATCCCGACGGCGGAAAAAGCCGGTGGTAACTACCTCTCTTCCCTGCTGGTGGGt < 1:75610/73‑1 (MQ=255)
acccGCGCAGCACCAAACCCCACCCCGCCGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCCTGCTGGTGGGTa < 1:4511423/74‑1 (MQ=255)
aaCCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCCTGCTGGTGGGTa > 1:1607573/1‑76 (MQ=255)
aaCCGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGACGGTGGTAACTACCTCTCTTCCCTGCTGGTGGGTa > 1:3120020/1‑76 (MQ=255)
aCCGCGCAGCACCAAACCCCACCCCGGCGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCCTGCTGGTGGGTAg < 2:2073163/76‑1 (MQ=255)
ccGCGCAGCACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGGAACTACCTCTCCTCCCTGCTGGTGGGTAGc > 2:2047169/1‑76 (MQ=255)
cgcgCAGCACCAAACACCACCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCCTGCTGGTGGGTAGCg < 2:2273998/76‑1 (MQ=255)
||
GGAGCGTATCTGGGCGCAGAAGCGCTGGAGCAGGGGATCGATGCGATGGTTTCCTCCTGGAACCGCGCACGACCAAACACCATCCCGACGGCGGCAAAAGCCGGTGGTAACTACCTCTCTTCCCTGCTGGTGGGTAGCG > NC_000913/3950488‑3950626
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
