Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I2 R1
|
766 |
64.2 |
3232166 |
90.9% |
2938038 |
104.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,809,787 |
T→C |
D136D (GAT→GAC) |
yniC → |
2‑deoxyglucose‑6‑P phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,809,787 | 0 | T | C | 100.0%
| 189.4
/ NA
| 53 | D136D (GAT→GAC) | yniC | 2‑deoxyglucose‑6‑P phosphatase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (27/26); total (27/26) |
CGTGCGCGAAGCCGTTGCGTTATGCAAAGAACAAGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGATGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGACCTGCGTAGCGCTGGAAGATTCGGTAAATGGCATGATC > NC_000913/1809667‑1809916
|
cGTGCGCGAAGCCGTTGCGTTATGCAAAGAACAAGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGaa > 2:124607/1‑139 (MQ=255)
tGCGCGAAGCCGTTGCGTTATGCAAAGAACAAGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGaaaa > 1:659563/1‑139 (MQ=255)
gcgcGAAGCCGTTGCGTTATGCAAAGAACAAGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACGACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCACGCCTCGGCCGaaaaa < 2:1196041/139‑1 (MQ=255)
aTGCAAAGAACAAGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCg > 1:1293744/1‑139 (MQ=255)
aGAACAAGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGaaa < 1:1235207/113‑1 (MQ=255)
aGAACAAGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGaaa > 2:1235207/1‑113 (MQ=255)
aGAACAAGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCg < 2:659563/139‑1 (MQ=255)
cAAGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAg < 2:1564264/139‑1 (MQ=255)
aaGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGt > 2:374486/1‑139 (MQ=255)
ggtggGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCg < 2:1336286/124‑1 (MQ=255)
ggtggGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCg > 1:1336286/1‑124 (MQ=255)
tggGACTGGCCTCCGCGTCACCATTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTg < 2:674327/139‑1 (MQ=255)
gggACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGc < 2:1463460/116‑1 (MQ=255)
gggACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGc > 1:1463460/1‑116 (MQ=255)
ggACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTgcg > 1:1188932/1‑139 (MQ=255)
ggCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCgcagca > 2:474287/1‑139 (MQ=255)
cgcgTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCcctcgcc < 1:84208/73‑1 (MQ=255)
cgcgTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCcctcgcc > 1:1357027/1‑73 (MQ=255)
cgcgTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCcctcgcc < 2:1357027/73‑1 (MQ=255)
cgcgTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCcctcgcc > 2:84208/1‑73 (MQ=255)
cgcgTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATcc < 1:637554/108‑1 (MQ=255)
cgcgTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATcc > 2:637554/1‑108 (MQ=255)
cgTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTggg < 1:474287/139‑1 (MQ=255)
caccacTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGt > 2:125311/1‑139 (MQ=255)
caccacTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGt > 1:805537/1‑139 (MQ=255)
cTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCcctcgcct < 1:1228729/64‑1 (MQ=255)
cTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCcctcgcct > 2:1228729/1‑64 (MQ=255)
atatGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCctct < 1:124607/139‑1 (MQ=255)
tGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGAc < 1:374486/139‑1 (MQ=255)
gCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCg < 1:735478/85‑1 (MQ=255)
gCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCg > 2:735478/1‑85 (MQ=255)
gCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGAcc > 1:1292989/1‑139 (MQ=255)
gCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGAc > 2:1305618/1‑138 (MQ=255)
gCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGAc < 1:1305618/138‑1 (MQ=255)
ggAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCcctcgcctc > 2:696501/1‑54 (MQ=255)
ggAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCcctcgcctc < 1:696501/54‑1 (MQ=255)
ggAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGACCTGc > 1:84012/1‑139 (MQ=255)
gtgtTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTg < 2:1276413/118‑1 (MQ=255)
gtgtTGACCATGTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTg > 1:1276413/1‑118 (MQ=255)
gTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAg < 2:1186994/74‑1 (MQ=255)
gTTTGACTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAg > 1:1186994/1‑74 (MQ=255)
aCTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCgcagca > 1:1475978/1‑89 (MQ=255)
aCTTACGCGACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCgcagca < 2:1475978/89‑1 (MQ=255)
cgcgATAGTTTCGACGCCCTCGCCTCGGCCGaaaa < 1:930796/35‑1 (MQ=255)
cgcgACAGTTTCGACGCCCTCGCCTCGGCCGaaaa > 2:930796/1‑35 (MQ=255)
cgcgACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATcc < 2:1214442/59‑1 (MQ=255)
cgcgACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATcc > 1:1214442/1‑59 (MQ=255)
cgcgACAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGACCTGCGTAGCGCTGGAAGATTCGGTAAATGGCa > 1:1455228/1‑139 (MQ=255)
cAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGACCTGCGTAGCGCTGGAAGATTCGGTAAATGGCATGATc < 2:1292989/139‑1 (MQ=255)
cAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGACCTGCGTAGCGCTGGAAGATTCGGTAAATGGCATGATc < 2:1188932/139‑1 (MQ=255)
cAGTTTCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGACCTGCGTAGCGCTGGAAGATTCGGTAAATGGCATGATc < 2:84012/139‑1 (MQ=255)
tCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAg < 2:1126554/54‑1 (MQ=255)
tCGACGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAg > 1:1126554/1‑54 (MQ=255)
|
CGTGCGCGAAGCCGTTGCGTTATGCAAAGAACAAGGTTTATTGGTGGGACTGGCCTCCGCGTCACCACTACATATGCTGGAAAAAGTGTTGACCATGTTTGACTTACGCGACAGTTTCGATGCCCTCGCCTCGGCCGAAAAACTGCCTTACAGCAAGCCGCATCCGCAAGTATATCTCGACTGCGCAGCAAAACTGGGCGTTGACCCTCTGACCTGCGTAGCGCTGGAAGATTCGGTAAATGGCATGATC > NC_000913/1809667‑1809916
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
