Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F1 I2 R1	772	77.0	3769570	91.6%	3452926	105.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,474,138	(A)_6→7	coding (15/594 nt)	bdcR →	transcriptional repressor for divergent bdcA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,474,132	1	.	A	100.0%	282.4 / NA	86	T3T (ACT→ACA)	bdcR	transcriptional repressor for divergent bdcA
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (45/41); total (45/41)

GCACCGATACCACGACTGCCACCGAGGATGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACT‑‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGT  >  NC_000913/4473995‑4474264

gCACCGATACCACGACTGCCACCGAGGATGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACT‑‑a                                                                                                                                     <  1:1871178/139‑1 (MQ=255)

             gACTGCCACCGAGGATGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAAtctc                                                                                                                         <  2:825384/139‑1 (MQ=255)

                 gCCACCGAGGATGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGt                                                                                                                     >  1:345374/1‑139 (MQ=255)

                  ccACCGAGGATGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGtt                                                                                                                    >  1:485056/1‑139 (MQ=255)

                                      cTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGttt                                                                                                <  1:886124/139‑1 (MQ=255)

                                              tAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTg                                                                                        <  1:902738/139‑1 (MQ=255)

                                               aaaaGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGgtcgt                                                                                                           <  2:154784/119‑1 (MQ=255)

                                               aaaaGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGgtcgt                                                                                                           >  1:154784/1‑119 (MQ=255)

                                               aaaaGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGa                                                                                       >  2:1612190/1‑139 (MQ=255)

                                                aaaGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAg                                                                                      <  1:652395/139‑1 (MQ=255)

                                                 aaGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGc                                                                                     <  2:485056/139‑1 (MQ=255)

                                                      cccATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGgt                                                                                                              >  1:1112729/1‑109 (MQ=255)

                                                      cccATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGgt                                                                                                              <  2:1112729/109‑1 (MQ=255)

                                                                 tCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGCTTCGCTCCTGAGCAGGCAATCTCTGCGGc                                                                     >  1:230934/1‑139 (MQ=255)

                                                                   cTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTAAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCa                                                                    >  2:413678/1‑139 (MQ=255)

                                                                   cTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAg                                                                                      >  2:570369/1‑120 (MQ=255)

                                                                   cTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAg                                                                                      <  1:570369/120‑1 (MQ=255)

                                                                   cTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCaa                                                                   >  1:962820/1‑139 (MQ=255)

                                                                   cTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACT‑‑aa                                                                                                                                    <  2:1446135/73‑1 (MQ=255)

                                                                   cTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACT‑‑aa                                                                                                                                    >  1:1446135/1‑73 (MQ=255)

                                                                   cTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTATGTCAACACGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCaa                                                                   >  1:1414093/1‑139 (MQ=255)

                                                                        tttATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAAtctc                                                                                                                         >  2:1219010/1‑80 (MQ=255)

                                                                        tttATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAAtctc                                                                                                                         <  1:1219010/80‑1 (MQ=255)

                                                                          tattatGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGGTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCt                                                            >  1:368594/1‑139 (MQ=255)

                                                                                 tAACATGCATTACAAAACTGTTTCAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTcg                                                                                                                        >  1:630201/1‑72 (MQ=255)

                                                                                 tAACATGCATTACAAAACTGTTTCAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTcg                                                                                                                        <  2:630201/72‑1 (MQ=255)

                                                                                   aCATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCa                                                   <  2:962820/139‑1 (MQ=255)

                                                                                      tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaaa                                                >  1:1511646/1‑139 (MQ=255)

                                                                                      tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaaa                                                >  1:1581971/1‑139 (MQ=255)

                                                                                      tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaaa                                                >  1:1680139/1‑139 (MQ=255)

                                                                                      tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaaa                                                >  2:679129/1‑139 (MQ=255)

                                                                                      tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACAaaaa                                                >  2:1558907/1‑139 (MQ=255)

                                                                                        cATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAgg                                                                                                               >  2:673386/1‑74 (MQ=255)

                                                                                        cATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAgg                                                                                                               <  1:673386/74‑1 (MQ=255)

                                                                                         aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGgt                                                                                                              >  1:1241346/1‑74 (MQ=255)

                                                                                         aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGgt                                                                                                              <  2:1241346/74‑1 (MQ=255)

                                                                                         aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTc                                                                                           >  2:782222/1‑93 (MQ=255)

                                                                                         aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTc                                                                                           <  1:782222/93‑1 (MQ=255)

                                                                                         aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAgg                                             >  1:156616/1‑139 (MQ=255)

                                                                                         aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAgg                                             >  1:1677101/1‑139 (MQ=255)

                                                                                         aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAgg                                             >  1:908507/1‑139 (MQ=255)

                                                                                           tACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTcg                                                                                                                        <  1:858064/62‑1 (MQ=255)

                                                                                           tACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTcg                                                                                                                        >  2:858064/1‑62 (MQ=255)

                                                                                           tACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGtt                                           <  2:368594/139‑1 (MQ=255)

                                                                                             cAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTc                                         >  1:509393/1‑139 (MQ=255)

                                                                                               aaaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGttt                                                                                                >  2:1621696/1‑82 (MQ=255)

                                                                                               aaaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGttt                                                                                                <  1:1621696/82‑1 (MQ=255)

                                                                                               aaaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGa                                       >  1:1482467/1‑139 (MQ=255)

                                                                                               aaaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGa                                       <  1:1558907/139‑1 (MQ=255)

                                                                                               aaaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGa                                       <  2:1482467/139‑1 (MQ=255)

                                                                                                aaCTGTTTTAACTTTCTGTCGACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGAt                                      <  2:794321/139‑1 (MQ=255)

                                                                                                aaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCttttt                                                        <  2:301149/121‑1 (MQ=255)

                                                                                                aaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCttttt                                                        >  1:301149/1‑121 (MQ=255)

                                                                                                aaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGAt                                      <  1:1612190/139‑1 (MQ=255)

                                                                                                  cTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGc                                    <  2:345374/139‑1 (MQ=255)

                                                                                                   tGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaa                                                 >  2:1788574/1‑125 (MQ=255)

                                                                                                   tGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaa                                                 <  1:1788574/125‑1 (MQ=255)

                                                                                                     ttttAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGAt                                      <  2:455739/134‑1 (MQ=255)

                                                                                                     ttttAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGAt                                      >  1:455739/1‑134 (MQ=255)

                                                                                                     ttttAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGt                                 >  2:687742/1‑139 (MQ=255)

                                                                                                     ttttAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGt                                 >  1:945839/1‑139 (MQ=255)

                                                                                                     ttttAACTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGt                                 >  1:1167380/1‑139 (MQ=255)

                                                                                                          aCTTTCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAgtg                            <  2:1511646/139‑1 (MQ=255)

                                                                                                             ttCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTg                         <  2:1414093/139‑1 (MQ=255)

                                                                                                              tCTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGc                        <  1:687742/139‑1 (MQ=255)

                                                                                                               cTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTcg                                                                                                                        >  1:678283/1‑42 (MQ=255)

                                                                                                               cTGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTcg                                                                                                                        <  2:678283/42‑1 (MQ=255)

                                                                                                                tGTCAACAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCTTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTg                      <  2:1167380/139‑1 (MQ=255)

                                                                                                                     aCAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGtt                 <  2:1677101/139‑1 (MQ=255)

                                                                                                                      cAGGTTTTGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTa                <  2:509393/139‑1 (MQ=255)

                                                                                                                          ttttGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGa                                       >  1:239890/1‑112 (MQ=255)

                                                                                                                          ttttGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGa                                       <  2:239890/112‑1 (MQ=255)

                                                                                                                          ttttGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGa            <  2:908507/139‑1 (MQ=255)

                                                                                                                          ttttGTAATGGTCACTA‑AAAAAACAATCGCGCGTCCCAGGTCGTCCCAGCCGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGa            >  1:1217592/1‑139 (MQ=255)

                                                                                                                            ttGTAATGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGAtt          >  1:1532949/1‑139 (MQ=255)

                                                                                                                                aaTGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCt      <  1:679129/139‑1 (MQ=255)

                                                                                                                                 aTGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATc       >  1:186799/1‑137 (MQ=255)

                                                                                                                                 aTGGTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATc       <  2:186799/137‑1 (MQ=255)

                                                                                                                                   ggTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGttt                                          <  1:1312954/100‑1 (MQ=255)

                                                                                                                                   ggTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGttt                                          >  2:1312954/1‑100 (MQ=255)

                                                                                                                                   ggTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTg                      >  1:872723/1‑120 (MQ=255)

                                                                                                                                   ggTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTg                      <  2:1196901/120‑1 (MQ=255)

                                                                                                                                   ggTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTg                      <  2:872723/120‑1 (MQ=255)

                                                                                                                                   ggTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACt              >  1:959075/1‑128 (MQ=255)

                                                                                                                                   ggTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACt              <  2:959075/128‑1 (MQ=255)

                                                                                                                                   ggTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGCGTTGCTg                      >  1:1196901/1‑120 (MQ=255)

                                                                                                                                    gTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAg                              >  1:866081/1‑111 (MQ=255)

                                                                                                                                    gTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAg                              <  2:866081/111‑1 (MQ=255)

                                                                                                                                    gTCACTA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGt  >  1:440609/1‑139 (MQ=255)

GCACCGATACCACGACTGCCACCGAGGATGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACT‑‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGT  >  NC_000913/4473995‑4474264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A