Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F1 I1 R1
|
760 |
58.2 |
3022526 |
90.8% |
2744453 |
102.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,320,333 |
T→C |
E427E (GAA→GAG) |
yhbX ← |
putative EptAB family phosphoethanolamine transferase, inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,320,333 | 0 | T | C | 100.0%
| 268.5
/ NA
| 73 | E427E (GAA→GAG) | yhbX | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/36); total (37/36) |
GTTGTTTTCCGTTGTGCGATCCACGCCATCCCCAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGTTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGT > NC_000913/3320201‑3320462
|
gttgttTTCCGTTGTGCGATCCACGCCATCCCCAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAgg > 2:1151413/1‑139 (MQ=255)
gTTGTGCGATCCACGCCATCCCCAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGcc > 1:1080591/1‑131 (MQ=255)
gTTGTGCGATCCACGCCATCCCCAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGcc < 2:1080591/131‑1 (MQ=255)
tgCGATCCACGCCATCCCCAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCaaa > 1:275229/1‑139 (MQ=255)
gCCATCCCCAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGAcc > 2:219920/1‑139 (MQ=255)
gCCATCCCCAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGAcc > 1:276358/1‑139 (MQ=255)
ccccAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGTCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATCGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAg > 1:721280/1‑137 (MQ=255)
ccccAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAg < 2:721280/137‑1 (MQ=255)
ccccAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGgc > 2:1306553/1‑139 (MQ=255)
ccccAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGgc > 1:862621/1‑139 (MQ=255)
aGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAGTAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCgcggc > 2:865329/1‑139 (MQ=255)
aGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCgcggc < 2:172818/139‑1 (MQ=255)
cGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATc > 1:471316/1‑139 (MQ=255)
gATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCa < 1:219920/139‑1 (MQ=255)
gATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCa < 1:1306553/139‑1 (MQ=255)
aTAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCaa < 1:1346964/139‑1 (MQ=255)
aCATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGt < 1:1393340/90‑1 (MQ=255)
aCATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGt > 2:1393340/1‑90 (MQ=255)
aTCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCt > 2:549686/1‑139 (MQ=255)
gggACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGAc < 2:1486204/139‑1 (MQ=255)
cATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTGGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAAGCTGACCTAg > 2:891890/1‑139 (MQ=255)
gATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCaa > 1:744167/1‑139 (MQ=255)
tGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTa < 1:891890/139‑1 (MQ=255)
gCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTAt < 2:275229/139‑1 (MQ=255)
ccTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACAt > 1:272155/1‑85 (MQ=255)
ccTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACAt < 2:272155/85‑1 (MQ=255)
tgctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCt < 2:1388599/126‑1 (MQ=255)
tgctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCt > 1:1388599/1‑126 (MQ=255)
tgctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCa > 2:130830/1‑130 (MQ=255)
tgctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCa < 1:130830/130‑1 (MQ=255)
tgctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCtg > 1:529455/1‑139 (MQ=255)
ctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCa > 2:1339866/1‑73 (MQ=255)
ctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCa < 1:1339866/73‑1 (MQ=255)
ctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCgcggc > 2:233755/1‑95 (MQ=255)
ctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCgcggc < 1:233755/95‑1 (MQ=255)
ctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCtgt < 1:1304902/138‑1 (MQ=255)
ctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCtgt > 2:1404260/1‑138 (MQ=255)
ctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCtgt < 1:1404260/138‑1 (MQ=255)
ctgGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCtgt > 2:1304902/1‑138 (MQ=255)
ccTCCCTGCCTCCATGAAAAGAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTaatgaat < 2:471316/139‑1 (MQ=255)
cccTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGa < 1:575538/139‑1 (MQ=255)
cTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGt < 2:704936/55‑1 (MQ=255)
cTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGt > 1:704936/1‑55 (MQ=255)
cTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTAt < 1:253222/121‑1 (MQ=255)
cTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTAt > 2:253222/1‑121 (MQ=255)
ccTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCa > 2:930426/1‑96 (MQ=255)
ccTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCa < 1:930426/96‑1 (MQ=255)
ccTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCtgt < 2:849856/122‑1 (MQ=255)
ccTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCtgt > 1:849856/1‑122 (MQ=255)
ccATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCgcggc < 2:800877/76‑1 (MQ=255)
ccATGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCgcggc > 1:800877/1‑76 (MQ=255)
tGAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGAGTTGTCATAGc > 2:682157/1‑139 (MQ=255)
gAAAATAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGAGTTGTCATAGCa < 1:549686/139‑1 (MQ=255)
aaaaTAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGAGTTGTCATAGCAg < 2:276358/139‑1 (MQ=255)
aTAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGAGTTGTCATAGCAGGCa < 1:682157/139‑1 (MQ=255)
tAGACGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCAATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGTGTTGTCATAGCAGGCAt < 2:862621/139‑1 (MQ=255)
cGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCa < 1:1345559/96‑1 (MQ=255)
cGTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCa > 2:1345559/1‑96 (MQ=255)
gTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTAt < 2:789989/101‑1 (MQ=255)
gTTCTTCTTCGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTAt > 1:789989/1‑101 (MQ=255)
ttcttcttcGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCa > 2:1395022/1‑94 (MQ=255)
ttcttcttcGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCa < 1:1395022/94‑1 (MQ=255)
cttcttcGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGgcg > 2:681688/1‑55 (MQ=255)
cttcttcGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGgcg < 1:681688/55‑1 (MQ=255)
cttcttcGTAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCg > 1:1402781/1‑139 (MQ=255)
tAGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCgg > 2:644151/1‑139 (MQ=255)
aGGGTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGt < 1:865329/139‑1 (MQ=255)
ggTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCgcgg < 2:639928/47‑1 (MQ=255)
ggTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCgcgg > 1:639928/1‑47 (MQ=255)
ggTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGAc > 2:1331743/1‑75 (MQ=255)
ggTCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGAc < 1:1331743/75‑1 (MQ=255)
tCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCa > 2:793655/1‑79 (MQ=255)
tCACGCTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCa < 1:793655/79‑1 (MQ=255)
|
GTTGTTTTCCGTTGTGCGATCCACGCCATCCCCAAGAACGGGGCTATACCAGATAAACATCGGGACATGATATGCCTGCTGGCTAGCCTCCCTGCCTCCATGAAAATAGACGTTCTTCTTCGTAGGGTCACGTTCCAGGCCGTGGTCGGCAAAATACATGACCGAGGCGCGGCGATCTTTTAATAATTCAAAAACCTGACCTAGCAAACTATCTGTGTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGT > NC_000913/3320201‑3320462
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
