Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I2 R1
|
760 |
67.6 |
3323148 |
92.7% |
3080558 |
109.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,733,703 |
G→A |
*1539* (TAG→TAA) |
lhr → |
putative ATP‑dependent helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,733,703 | 0 | G | A | 100.0%
| 141.4
/ NA
| 44 | *1539* (TAG→TAA) | lhr | putative ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/20); total (24/20) |
CGTCGCGAACCACGGCTGCGCTTTACGCTAACAGA‑AGTGAATGATCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACG > NC_000913/1733575‑1733825
|
gcgtccgAAACACGGCCTCGGTTTTAGCTAA‑AGAGAGGGAAAGGTCTACCGGTCCGGCAAAACCCGAATGTTTCCCCGGCT‑CGGGAGGCGGGGATTTTAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACt < 2:238822/134‑1 (MQ=255)
cgcTTTACGCTAACAGA‑AGTGAATGATCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCg < 2:1606550/137‑1 (MQ=255)
cgcTTTACGCTAACAGA‑AGTGAATGATCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCa > 1:202444/1‑139 (MQ=255)
cgcTTTACGCTAACAGA‑AGTGAATGATCTACCGGTCCGGCAAACGCCG‑ATGCTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCg > 1:1606550/1‑137 (MQ=255)
tACGCTAACAGA‑AGTGAATGATCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGt < 1:172079/139‑1 (MQ=255)
cAGA‑AGTGAATGATCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCg < 2:1419123/124‑1 (MQ=255)
cAGA‑AGTGAATGATCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCg > 1:1419123/1‑124 (MQ=255)
aaTGATCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAg < 1:1094625/126‑1 (MQ=255)
aaTGATCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAg > 2:1094625/1‑126 (MQ=255)
aTGATCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGa > 2:424566/1‑139 (MQ=255)
tCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCGGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGattat > 2:985853/1‑139 (MQ=255)
aCCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTcc > 2:1546831/1‑139 (MQ=255)
ggTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCcgcg < 1:424566/139‑1 (MQ=255)
ccGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCa < 1:296835/104‑1 (MQ=255)
ccGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCa > 2:296835/1‑104 (MQ=255)
cGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAaaga > 2:803336/1‑78 (MQ=255)
cGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAaaga < 1:803336/78‑1 (MQ=255)
cGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGt < 1:96558/98‑1 (MQ=255)
cGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGt > 2:96558/1‑98 (MQ=255)
cGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCa > 2:508769/1‑118 (MQ=255)
cGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCa < 1:508769/118‑1 (MQ=255)
cGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCg > 1:659555/1‑139 (MQ=255)
cGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCg > 1:1238551/1‑139 (MQ=255)
gCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGc > 1:1288681/1‑139 (MQ=255)
tttACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGt > 2:1181864/1‑139 (MQ=255)
gctgcGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCg > 2:186135/1‑139 (MQ=255)
ctgcGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCgg > 2:311636/1‑139 (MQ=255)
ctgaGTGAGGCGGGATTTTCAAGTTCGACACAAGAGCTGACTTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATGCGTCAGTATTGCATGACGGATTATTCCTCGTCCGGCTCTTCAGTCTTGTATGTAGTgg > 2:1489271/1‑139 (MQ=255)
cGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGGAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAg < 2:334521/139‑1 (MQ=255)
ggCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCt > 2:827472/1‑139 (MQ=255)
gATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGGCTTGTATTTAGCGGCAGTTTCTTTGAt > 1:1153781/1‑139 (MQ=255)
tttCAAGTTCGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAg < 1:1178236/139‑1 (MQ=255)
ttCGCCACTAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGCATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCtgctgc < 1:985853/139‑1 (MQ=255)
cGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGttt > 1:509011/1‑120 (MQ=255)
cGCCACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGttt < 2:509011/120‑1 (MQ=255)
ccACAAGGGCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGtt < 2:202444/139‑1 (MQ=255)
ggCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGGCTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACg < 2:1153781/139‑1 (MQ=255)
ggCTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACg < 2:1238551/139‑1 (MQ=255)
cTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCgg > 2:133643/1‑80 (MQ=255)
cTGGATTGGGGATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCgg < 1:133643/80‑1 (MQ=255)
gggATAAAGAAAGGACTGACGGATGCCCGTTCGCa < 1:1453983/35‑1 (MQ=255)
gggATAAAGAAAGGACTGACGGATGCCCGTTCGCa > 2:1453983/1‑35 (MQ=255)
gggATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAg < 1:1544245/43‑1 (MQ=255)
gggATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAg > 2:1544245/1‑43 (MQ=255)
gggATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCa > 1:577187/1‑50 (MQ=255)
gggATAAAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCa < 2:577187/50‑1 (MQ=255)
|
CGTCGCGAACCACGGCTGCGCTTTACGCTAACAGA‑AGTGAATGATCTACCGGTCCGGCAAACGCCG‑ATGTTTACGCTGCTGCGTGAGGCGGGATTTTCAAGTTCGCCACAAGGGCTGGATTGGGGATAGAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGTATTGCAGGACGGATTATTCCGCGTCCGGCTCTTCAGACTTGTATTTAGCGGCAGTTTCTTTGATCAGCTGCTGCAGTTCGCCACG > NC_000913/1733575‑1733825
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
