Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I2 R1
|
760 |
67.6 |
3323148 |
92.7% |
3080558 |
109.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,475,562 |
(G)6→7 |
coding (126/1815 nt) |
yjgL → |
SopA‑central‑domain‑like hexapeptide repeat protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,475,556 | 1 | . | G | 98.8%
| 295.7
/ ‑3.7
| 83 | coding (120/1815 nt) | yjgL | SopA‑central‑domain‑like hexapeptide repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (43/39); total (43/40) |
| Fisher's exact test for biased strand distribution p-value = 4.82e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 |
Only 100 of 102 total aligned reads displayed.
TCAAGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTC > NC_000913/4475423‑4475686
|
tCAAGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggg < 2:894371/139‑1 (MQ=255)
aaGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTCCATTAGCCGACAATTTTAAACAAACAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCATATTGC‑C‑ggggggg > 1:1013720/1‑138 (MQ=255)
aaGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg < 1:263612/139‑2 (MQ=255)
aaGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg < 1:1419226/139‑2 (MQ=255)
aGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑gggggggc < 2:44127/139‑3 (MQ=255)
ttCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGAt > 2:1340144/1‑139 (MQ=255)
tCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACa > 1:716292/1‑139 (MQ=255)
aaTATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAatat > 2:1180599/1‑139 (MQ=255)
ttAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCt > 2:1131598/1‑139 (MQ=255)
aaaTTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTgg > 1:146066/1‑139 (MQ=255)
attCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCAt < 2:724603/139‑1 (MQ=255)
aaCACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTag > 2:82353/1‑139 (MQ=255)
aaCACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑gg < 1:133552/91‑1 (MQ=255)
aaCACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑gg > 2:133552/1‑91 (MQ=255)
cacaTTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg > 2:217874/1‑93 (MQ=255)
cacaTTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg < 1:217874/94‑2 (MQ=255)
attacattaGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAg < 1:891546/125‑1 (MQ=255)
attacattaGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAg > 2:891546/1‑125 (MQ=255)
attaGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGc > 2:1313609/1‑139 (MQ=255)
taGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCaa > 1:681661/1‑139 (MQ=255)
aGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAGTGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCaaa < 1:89947/139‑1 (MQ=255)
aGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCaaa > 2:100983/1‑139 (MQ=255)
gCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCaaa < 1:395389/138‑1 (MQ=255)
gCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCaaa > 2:395389/1‑138 (MQ=255)
gCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAg > 2:306570/1‑139 (MQ=255)
gCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg < 2:393923/82‑2 (MQ=255)
gCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg > 1:393923/1‑81 (MQ=255)
ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACTTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGa > 1:1612121/1‑139 (MQ=255)
ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATa > 2:46204/1‑88 (MQ=255)
ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATa < 1:46204/88‑1 (MQ=255)
ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGa > 1:1025256/1‑139 (MQ=255)
ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGa > 1:1450309/1‑139 (MQ=255)
ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGa > 1:113433/1‑139 (MQ=255)
ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGa > 2:901377/1‑139 (MQ=255)
ccGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGa > 1:1323596/1‑139 (MQ=255)
gACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGata > 1:176140/1‑139 (MQ=255)
gACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGata > 2:1145985/1‑139 (MQ=255)
aCAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGatat < 2:645546/139‑1 (MQ=255)
aCAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGatat < 2:716292/139‑1 (MQ=255)
aCAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg < 2:1375493/78‑2 (MQ=255)
aCAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg > 1:1375493/1‑77 (MQ=255)
cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGa > 1:42177/1‑82 (MQ=255)
cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGa < 2:42177/82‑1 (MQ=255)
cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCaaa > 2:1269357/1‑133 (MQ=255)
cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCaaa < 1:1269357/133‑1 (MQ=255)
cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATAtt > 2:309858/1‑139 (MQ=255)
cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATAtt < 1:309858/139‑1 (MQ=255)
cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg > 1:1367677/1‑76 (MQ=255)
cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg < 2:1367677/77‑2 (MQ=255)
cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggg < 1:363362/75‑1 (MQ=255)
cAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggg > 2:363362/1‑75 (MQ=255)
tttAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGCAG‑GGGGGGCAGGATAACAGAAGGAATATTATTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAACGATATTTAcc < 1:558939/139‑1 (MQ=255)
aaaaGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGatat < 2:1541485/125‑1 (MQ=255)
aaaaGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGatat > 1:1541485/1‑125 (MQ=255)
aaGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGAtt > 2:568788/1‑139 (MQ=255)
aaaTACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCaa < 1:306570/139‑1 (MQ=255)
aaTACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCaaa < 1:1131598/139‑1 (MQ=255)
aaTACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCaaa < 2:113433/139‑1 (MQ=255)
aaTACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCaaa < 1:100983/139‑1 (MQ=255)
ccTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGa < 2:141623/57‑1 (MQ=255)
ccTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGa > 1:141623/1‑57 (MQ=255)
cTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAg > 1:1488046/1‑78 (MQ=255)
cTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAg < 2:1488046/78‑1 (MQ=255)
cTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTa > 2:32875/1‑86 (MQ=255)
cTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTa < 1:32875/86‑1 (MQ=255)
cTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg > 2:916449/1‑43 (MQ=255)
cTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑ggggggg < 1:916449/44‑2 (MQ=255)
tGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTcc > 1:300404/1‑139 (MQ=255)
ggCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCGTTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCa > 2:528123/1‑139 (MQ=255)
ggCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCa > 2:691474/1‑139 (MQ=255)
cGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCa < 1:1503350/128‑1 (MQ=255)
cGTGTTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCa > 2:1503350/1‑128 (MQ=255)
gtTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGaa < 2:146066/139‑1 (MQ=255)
gtTGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGaa < 1:1340144/139‑1 (MQ=255)
ttGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAg > 2:760941/1‑70 (MQ=255)
ttGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAg < 1:760941/70‑1 (MQ=255)
ttGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAg < 2:151080/139‑1 (MQ=255)
ttGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAg > 2:841789/1‑139 (MQ=255)
ttGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAg < 2:1013720/139‑1 (MQ=255)
ttGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAg > 2:580720/1‑139 (MQ=255)
tGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTggg > 2:425491/1‑106 (MQ=255)
tGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTggg < 1:425491/106‑1 (MQ=255)
tGGAATGAATGATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGc < 2:423702/139‑1 (MQ=255)
aatgaatgATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCggg < 2:1025256/139‑1 (MQ=255)
aatgaatgATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCggg < 2:681661/139‑1 (MQ=255)
aatgaatgATTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCggg < 1:1102748/139‑1 (MQ=255)
atgaatgaTTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGt < 2:1450309/139‑1 (MQ=255)
tgaTTTTGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGaaa > 2:407254/1‑139 (MQ=255)
tGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGatat > 1:1036077/1‑81 (MQ=255)
tGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGatat < 2:1036077/81‑1 (MQ=255)
tGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGaa > 2:383326/1‑122 (MQ=255)
tGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGaa < 1:383326/122‑1 (MQ=255)
tGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATatgat > 2:58498/1‑139 (MQ=255)
tGCCCGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATatgat < 1:1313609/139‑1 (MQ=255)
cccGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCGTTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATgg < 1:528123/139‑1 (MQ=255)
cGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCt < 1:691474/139‑1 (MQ=255)
cGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCt < 2:1274503/139‑1 (MQ=255)
cGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCt < 2:1323596/139‑1 (MQ=255)
cGTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCt < 2:300404/139‑1 (MQ=255)
gTATTGC‑CGGGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTc < 1:841789/139‑1 (MQ=255)
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TCAAGGAGTTCGTCATGAGCAAAATATCAGATTTAAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAATACCTGGCGTGTTGGAATGAATGATTTTGCCCGTATTGC‑C‑GGGGGGCAGGATAACAGAAGGAATATTCTTTCTCCTGGAGCATTTTTAGAGTTTTTGGCAAAGATATTTACCCTGGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGTAGAAATATGATGGCTC > NC_000913/4475423‑4475686
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
