Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F1 I1 R1	770	68.5	3470224	91.7%	3182195	103.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	819,747	G→A	151 (TAG→TAA)	moaE →	molybdopterin synthase, large subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	819,747	0	G	A	100.0%	267.9 / NA	82	151 (TAG→TAA)	moaE	molybdopterin synthase, large subunit
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (40/42); total (40/42)

AAGCCGGGCAGTTTATTATGGATTATCTCAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGTATCCTTAAGATATTCCTTATATCTTCAGGAGA  >  NC_000913/819620‑819878

aaGCCGGGCAGTTTATTATGGATTATCTCAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAg                                                                                                                          <  2:517397/139‑1 (MQ=255)

           tttATTATGGATTATCTC‑AAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCa                                                                                                              <  1:1405460/139‑1 (MQ=255)

                     aTTATCTCAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGt                                                                                                     >  1:566703/1‑139 (MQ=255)

                       tATCTCAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTcc                                                                                                   >  1:363978/1‑139 (MQ=255)

                       tATCTCAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTcc                                                                                                   <  2:1087188/139‑1 (MQ=255)

                       tATCTCAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGAAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTcc                                                                                                   >  1:1087188/1‑139 (MQ=255)

                       tATCTCAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCAATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTcc                                                                                                   >  1:661522/1‑139 (MQ=255)

                         tctcAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAg                                                                                                                          <  2:1418550/114‑1 (MQ=255)

                         tctcAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAg                                                                                                                          >  1:1418550/1‑114 (MQ=255)

                         tctcAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCgg                                                                                                 >  2:1556064/1‑139 (MQ=255)

                         tctcAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCgg                                                                                                 >  2:709965/1‑139 (MQ=255)

                         tctcAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCgg                                                                                                 >  1:1488616/1‑139 (MQ=255)

                         tctcAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCgg                                                                                                 >  1:1680394/1‑139 (MQ=255)

                              aaaCCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAAtt                                                                                            >  2:1267732/1‑139 (MQ=255)

                               aaCCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAGACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCGAttt                                                                                           >  1:1144465/1‑139 (MQ=255)

                                   cgcgCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCAcc                                                                                       >  2:1590638/1‑139 (MQ=255)

                                    gcgcACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCg                                                                                      <  2:912910/139‑1 (MQ=255)

                                    gcacACCGTTCTGTAAGCGCGAATCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCCAATCGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCg                                                                                      <  2:1144465/136‑1 (MQ=255)

                                     cgcACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGc                                                                                     >  1:148020/1‑139 (MQ=255)

                                      gcACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCt                                                                                    <  2:363978/139‑1 (MQ=255)

                                        aCCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCa                                                                                  <  2:291642/139‑1 (MQ=255)

                                           gTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTa                                                                               >  1:360551/1‑139 (MQ=255)

                                             tCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACa                                                                             <  2:1488616/139‑1 (MQ=255)

                                                    gcgcGAAGCCACGCCGGGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGtt                                                                       >  2:838420/1‑139 (MQ=255)

                                                     cgcgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCa                                                                                  <  1:1486778/126‑1 (MQ=255)

                                                     cgcgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCa                                                                                  >  2:1486778/1‑126 (MQ=255)

                                                      gcgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTAc                                                                    >  2:593625/1‑139 (MQ=255)

                                                      gcgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTAc                                                                    >  1:1499529/1‑139 (MQ=255)

                                                       cgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAg                                                                                                                          <  2:1230716/84‑1 (MQ=255)

                                                       cgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAg                                                                                                                          >  1:1230716/1‑84 (MQ=255)

                                                       cgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCa                                                                                         <  1:228669/117‑1 (MQ=255)

                                                       cgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCa                                                                                         >  2:228669/1‑117 (MQ=255)

                                                       cgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACa                                                                             >  2:1348193/1‑129 (MQ=255)

                                                       cgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACa                                                                             <  1:1348193/129‑1 (MQ=255)

                                                       cgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACg                                                                   >  2:456002/1‑139 (MQ=255)

                                                       cgAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACg                                                                   >  1:1254846/1‑139 (MQ=255)

                                                         aaGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCt                                                                 <  2:175313/139‑1 (MQ=255)

                                                             cACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGt                                                             <  2:627797/139‑1 (MQ=255)

                                                                     gAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGca                                                      >  2:1508415/1‑139 (MQ=255)

                                                                     gAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGca                                                      <  2:1254846/139‑1 (MQ=255)

                                                                     gAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGca                                                      <  1:1508415/139‑1 (MQ=255)

                                                                     gAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGca                                                      <  1:1434306/139‑1 (MQ=255)

                                                                      aaGGCGACCGCTGGGTTGAAGCTCGGGAGAGCAATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGcac                                                     <  2:661522/139‑1 (MQ=255)

                                                                           gACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCt                                                >  1:876015/1‑139 (MQ=255)

                                                                                   ggTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCt                                                                                    <  2:1413726/95‑1 (MQ=255)

                                                                                   ggTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCt                                                                                    >  1:1413726/1‑95 (MQ=255)

                                                                                     ttGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTg                                      <  2:360551/139‑1 (MQ=255)

                                                                                       gAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCa                                    <  2:389817/139‑1 (MQ=255)

                                                                                         aGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGt                                  <  2:1499529/139‑1 (MQ=255)

                                                                                         aGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGt                                  <  1:593625/139‑1 (MQ=255)

                                                                                         aGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGt                                  <  1:709965/139‑1 (MQ=255)

                                                                                             cGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCg                                                                                      <  1:705076/83‑1 (MQ=255)

                                                                                             cGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCg                                                                                      >  2:705076/1‑83 (MQ=255)

                                                                                             cGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGTATcc                              >  2:33044/1‑139 (MQ=255)

                                                                                               ggAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCg                                                                                      <  2:1279981/81‑1 (MQ=255)

                                                                                               ggAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCg                                                                                      >  1:1279981/1‑81 (MQ=255)

                                                                                               ggAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGcac                                                     <  2:1537782/114‑1 (MQ=255)

                                                                                               ggAGAGCGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGcac                                                     >  1:1537782/1‑114 (MQ=255)

                                                                                                     cGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCt                                                                                    >  1:249034/1‑77 (MQ=255)

                                                                                                     cGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCt                                                                                    <  2:249034/77‑1 (MQ=255)

                                                                                                     cGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGTATCCTTAAGata                      <  2:148020/139‑1 (MQ=255)

                                                                                                     cGATCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGTATCCTTAAGata                      <  1:838420/139‑1 (MQ=255)

                                                                                                        tCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGt                                  >  2:936185/1‑124 (MQ=255)

                                                                                                        tCAGCAGGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGt                                  <  1:936185/124‑1 (MQ=255)

                                                                                                             agGCGGCAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGTATCCTTAAGATATTCCTtat              <  2:1680394/139‑1 (MQ=255)

                                                                                                                 ggcAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACa                                                                             <  1:49908/72‑1 (MQ=255)

                                                                                                                 ggcAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACa                                                                             >  2:49908/1‑72 (MQ=255)

                                                                                                                 ggcAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGca                                                      <  2:1443970/95‑1 (MQ=255)

                                                                                                                 ggcAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGca                                                      >  1:1443970/1‑95 (MQ=255)

                                                                                                                  gcAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCa                                                                                         <  1:899901/59‑1 (MQ=255)

                                                                                                                  gcAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCa                                                                                         >  2:899901/1‑59 (MQ=255)

                                                                                                                  gcAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCtca                                              >  2:1431961/1‑102 (MQ=255)

                                                                                                                  gcAAAACGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCtca                                              <  1:1431961/102‑1 (MQ=255)

                                                                                                                    aaaaCGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGTATCCTTAAGATATTCCTTATATCTTCa       >  1:1072252/1‑139 (MQ=255)

                                                                                                                      aaCGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCACTTTCACCGCt                                                                                    >  1:342262/1‑60 (MQ=255)

                                                                                                                      aaCGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCt                                                                                    <  2:342262/60‑1 (MQ=255)

                                                                                                                      aaCGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTg                                                                <  2:11785/80‑1 (MQ=255)

                                                                                                                      aaCGCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTg                                                                >  1:11785/1‑80 (MQ=255)

                                                                                                                         gCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGTATCCTTAAGATATTCCTTATATCTTCAGgaga  <  1:33044/139‑1 (MQ=255)

                                                                                                                         gCTGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGTATCCTTAAGATATTCCTTATATCTTCAGgaga  <  1:1590638/139‑1 (MQ=255)

                                                                                                                           tGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTg                                      >  2:263120/1‑101 (MQ=255)

                                                                                                                           tGGTAATTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTg                                      <  1:263120/101‑1 (MQ=255)

AAGCCGGGCAGTTTATTATGGATTATCTCAAAACCCGCGCACCGTTCTGGAAGCGCGAAGCCACGCC‑GGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGATGCACAGCCTCATCATTTTGCAGTATCCTTAAGATATTCCTTATATCTTCAGGAGA  >  NC_000913/819620‑819878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A