Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F1 I1 R1
|
765 |
39.6 |
1867486 |
94.4% |
1762906 |
108.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,370,336 |
G→A |
A107T (GCC→ACC) |
arnD → |
undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,370,336 | 0 | G | A | 100.0%
| 128.5
/ NA
| 41 | A107T (GCC→ACC) | arnD | undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (23/18); total (23/18) |
CAAACGCGGCATCGCTTTATGGCTGGGATATTTTACTGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACGCCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTCAACCGGTAACCTGTTCTGCCGCTGC > NC_000913/2370208‑2370466
|
cAAACGCGGCATCGCTTTATGGCTGGGATATTTTACTGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCa > 2:69905/1‑139 (MQ=255)
aTCGCTTTATGGCTGGGATATTTTACTGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTgg < 2:734806/139‑1 (MQ=255)
atatTTTACTGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTaa > 1:662602/1‑139 (MQ=255)
tGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAACGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCg < 2:667574/139‑1 (MQ=255)
ggCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGt < 1:214597/121‑1 (MQ=255)
ggCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGt > 2:214597/1‑121 (MQ=255)
ccTGGCCAGGTAAAGAGATTGGTCATGCCAATGTCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGAt > 1:770307/1‑139 (MQ=255)
ccTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGAt > 2:299521/1‑139 (MQ=255)
ccTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGAt > 2:128375/1‑139 (MQ=255)
ggCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga < 1:128375/139‑1 (MQ=255)
ccAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCa < 2:383319/86‑1 (MQ=255)
ccAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCa > 1:383319/1‑86 (MQ=255)
tGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga > 2:439895/1‑123 (MQ=255)
tGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga < 1:439895/123‑1 (MQ=255)
tGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGc < 2:271985/66‑1 (MQ=255)
tGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGc > 1:271985/1‑66 (MQ=255)
tGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga > 2:230374/1‑111 (MQ=255)
tGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga < 1:230374/111‑1 (MQ=255)
tGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTg > 2:719231/1‑139 (MQ=255)
gCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGGCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTgg > 1:621348/1‑139 (MQ=255)
atatCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGc > 2:725820/1‑66 (MQ=255)
atatCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGc < 1:725820/66‑1 (MQ=255)
atatCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCg > 1:652816/1‑127 (MQ=255)
atatCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCg < 2:652816/127‑1 (MQ=255)
ttCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCgg > 1:583737/1‑73 (MQ=255)
ttCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCgg < 2:583737/73‑1 (MQ=255)
ttCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTAt < 2:755105/139‑1 (MQ=255)
ttCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTAt < 2:770307/139‑1 (MQ=255)
ttCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTAt > 1:755105/1‑139 (MQ=255)
gAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTc > 1:784745/1‑139 (MQ=255)
gAAGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTc < 1:69905/139‑1 (MQ=255)
aaGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga < 2:290574/94‑1 (MQ=255)
aaGCGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATcga > 1:290574/1‑94 (MQ=255)
cGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCa < 2:395191/114‑1 (MQ=255)
cGGCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCa > 1:395191/1‑114 (MQ=255)
ggCTAAGCATCACGAAGTCGGCATGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCAGTCAACCg < 2:756518/139‑1 (MQ=255)
gCTAAACATCACGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTCAACCgg > 2:70301/1‑139 (MQ=255)
cGAAGTCGGCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTCAACCGGTAACCTGTTCt > 2:14386/1‑139 (MQ=255)
gCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGa > 1:722427/1‑52 (MQ=255)
gCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGa < 2:722427/52‑1 (MQ=255)
gCCTGCACACCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTCAACCGGTAACCTGTTCTGCCGCTGc > 1:467381/1‑139 (MQ=255)
|
CAAACGCGGCATCGCTTTATGGCTGGGATATTTTACTGGCAGGTACGGCCTGGCCAGGTAAAGAGATTGGTCATGCCAATGCCGATATCATTCGTGAAGCGGCTAAACATCACGAAGTCGGCCTGCACGCCTGGGATCACCATGCCTGGCAAGCCCGTAGCGGTAACTGGGATCGGCAAACAATGATCGACGATATTGCACGCGGTCTTCGCACTCTGGAAGAGATTATCGGTCAACCGGTAACCTGTTCTGCCGCTGC > NC_000913/2370208‑2370466
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
