Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F1 I1 R1	750	51.0	2595496	93.6%	2429384	106.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,511,146	C→T	W104* (TGG→TGA)	fecE ←	ferric citrate ABC transporter ATPase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,511,146	0	C	T	100.0%	211.9 / NA	66	W104* (TGG→TGA)	fecE	ferric citrate ABC transporter ATPase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (29/37); total (29/37)

CAGAAATGCGCGCTGGCGCTGACCGCCGGAAAGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGCCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAA  >  NC_000913/4511011‑4511280

cAGAAATGCGCGCTGGCGCTGACCGCCGGAAAGCTCGGTTAACCGACAAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAg                                                                                                                                     <  1:160158/139‑1 (MQ=255)

    aaTGCGCGCTGGCGCTGACCGCCGGAAAGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGAt                                                                                                                                 <  1:1048650/139‑1 (MQ=255)

        cgcgcTGGCGCTGACCGCCGGAAAGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACg                                                                                                                             >  1:32466/1‑139 (MQ=255)

         gcgctggcgctgACCGCCGGAAAGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGa                                                                                                                            >  2:517961/1‑139 (MQ=255)

          cgctggcgctgACCGCCGGAAAGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGAc                                                                                                                           <  2:206701/139‑1 (MQ=255)

          cgctggcgctgACCGCCGGAAAGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGAc                                                                                                                           <  1:992562/139‑1 (MQ=255)

                cgctgACCGCCGGAAAGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACg                                                                                                                     <  1:855619/139‑1 (MQ=255)

                     aCCGCCGGAAAGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAAcc                                                                                                                <  2:895482/139‑1 (MQ=255)

                            gAAAGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCt                                                                                                         <  1:517961/139‑1 (MQ=255)

                             aaaGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTg                                                                                                        <  2:32466/139‑1 (MQ=255)

                                   cGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACtgt                                                                                                  <  1:705608/139‑1 (MQ=255)

                                    ggTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACtgtg                                                                                                 <  2:617652/139‑1 (MQ=255)

                                       tAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATc                                                                                              <  1:101521/139‑1 (MQ=255)

                                            gacgaACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         <  2:158003/139‑1 (MQ=255)

                                            gacgaACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         <  2:814285/139‑1 (MQ=255)

                                            gacgaACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         <  2:413302/139‑1 (MQ=255)

                                              cgaACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAAcc                                                                                                                <  1:874882/114‑1 (MQ=255)

                                              cgaACGGCAAGATGATTGATCCGGGTCTGGTTAATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAAcc                                                                                                                >  2:874882/1‑114 (MQ=255)

                                                aaCGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGAc                                                                                                                           <  2:1102034/101‑1 (MQ=255)

                                                aaCGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGAc                                                                                                                           >  1:1102034/1‑101 (MQ=255)

                                                      aaGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTaaa                                                                               <  1:620563/139‑1 (MQ=255)

                                                           gattgatCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         >  2:893563/1‑124 (MQ=255)

                                                           gattgatCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         <  1:893563/124‑1 (MQ=255)

                                                                  ccGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCa                                                                                                                                      <  2:541465/72‑1 (MQ=255)

                                                                     ggTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGgcagc                                                                >  1:170181/1‑139 (MQ=255)

                                                                      gTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGgcagca                                                               >  2:1200229/1‑139 (MQ=255)

                                                                          ggTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAAcc                                                                                                                >  1:774695/1‑86 (MQ=255)

                                                                          ggTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAAcc                                                                                                                <  2:774695/86‑1 (MQ=255)

                                                                           gTTCATGGCGACATTAAGTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGAGTACGACCATACGAAACCAGCTCCTg                                                                                                        >  1:808047/1‑93 (MQ=255)

                                                                           gTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCta                                                                                                        <  2:808047/93‑2 (MQ=255)

                                                                           gTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         <  1:1236153/108‑1 (MQ=255)

                                                                           gTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         >  2:1236153/1‑108 (MQ=255)

                                                                            ttCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGaaa                                                         >  2:113752/1‑139 (MQ=255)

                                                                                tGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCt                                                     >  2:469896/1‑139 (MQ=255)

                                                                                     gcATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCATCAGCGAAAGCCTGCggg                                                >  1:795765/2‑139 (MQ=255)

                                                                                            cTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTg                                         >  2:927303/1‑139 (MQ=255)

                                                                                              cGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGgc                                       <  2:589866/139‑1 (MQ=255)

                                                                                                tGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGgcgc                                     >  1:423998/1‑139 (MQ=255)

                                                                                                tGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGgcgc                                     >  1:378827/1‑139 (MQ=255)

                                                                                                tGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGgcgc                                     >  2:174990/1‑139 (MQ=255)

                                                                                                  cATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGCAAGTCAGGGATTACGACCATACGAAACCATCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTAAGCCAGCAGCGAAACCCTGCGGGCCAACTGGCGCGa                                   >  2:893827/1‑139 (MQ=255)

                                                                                                   ataggattaggCGAAGAGAGGCCCCGGGAGAGAAAGGCAGCAATTCGGCCAATACGAGTCCAGCACCTGGATTGTGATCCCCGCTGGCGTTAAATGGTGCTGAGGCACGAGTGAAAGCCTGCGGGCCAACTGGGGTGAt                                  <  2:509926/129‑1 (MQ=255)

                                                                                                       tCTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATgaga                              >  1:626932/1‑139 (MQ=255)

                                                                                                        cTTCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGagag                             <  1:469896/139‑1 (MQ=255)

                                                                                                         ttCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGagag                             <  2:949634/138‑1 (MQ=255)

                                                                                                         ttCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGagag                             >  1:949634/1‑138 (MQ=255)

                                                                                                         ttCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGc                            <  2:795765/139‑1 (MQ=255)

                                                                                                          tCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCa                           <  1:692804/139‑1 (MQ=255)

                                                                                                          tCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCa                           <  2:423998/139‑1 (MQ=255)

                                                                                                          tCAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCa                           <  2:626932/139‑1 (MQ=255)

                                                                                                           cAGCGGAGAGACGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGTCAACTGGCGCGATGAGAGCat                          <  1:113752/139‑1 (MQ=255)

                                                                                                                gagagaCGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTa                     <  1:927303/139‑1 (MQ=255)

                                                                                                                 agagaCGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGa                                                                                                      <  1:832452/57‑1 (MQ=255)

                                                                                                                 agagaCGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATg                                 >  1:10369/1‑126 (MQ=255)

                                                                                                                 agagaCGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATg                                 <  2:10369/126‑1 (MQ=255)

                                                                                                                 agaaaCGCCCCCAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGa                                                                                                      >  2:832452/1‑57 (MQ=255)

                                                                                                                           ccAGAGTGACAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCg          <  1:1200229/139‑1 (MQ=255)

                                                                                                                                   aCAGTCAGGGATTACGACCATACGAAACCCGCTCCTGGACTGTGAGCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGaaa  >  2:745783/1‑139 (MQ=255)

                                                                                                                                   aCAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         <  1:931558/52‑1 (MQ=255)

                                                                                                                                   aCAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         <  1:9323/52‑1 (MQ=255)

                                                                                                                                   aCAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         >  2:9323/1‑52 (MQ=255)

                                                                                                                                   aCAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCctc                                                                                         >  2:931558/1‑52 (MQ=255)

                                                                                                                                   aCAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCt                                                     >  1:70529/1‑88 (MQ=255)

                                                                                                                                   aCAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGaaa  >  1:1240652/1‑139 (MQ=255)

                                                                                                                                   aCAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGaaa  <  1:498934/139‑1 (MQ=255)

                                                                                                                                   aCAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGaaa  >  1:506854/1‑139 (MQ=255)

                                                                                                                                   aCAGTCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGaaa  >  2:498934/1‑139 (MQ=255)

CAGAAATGCGCGCTGGCGCTGACCGCCGGAAAGCTCGGTTAACCGACGAACGGCAAGATGATTGATCCGGGTCTGGTTCATGGCGACATTAACTCGTGCATTGTCTTCAGCGGAGAGACGCCCCCAGAGTGACAGCCAGGGATTACGACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAA  >  NC_000913/4511011‑4511280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A