Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F1 I2 R1
|
774 |
49.2 |
2112398 |
96.9% |
2046913 |
118.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,763,987 |
Δ1 bp |
coding (23/1488 nt) |
sufB ← |
component of SufBCD Fe‑S cluster assembly scaffold |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,763,987 | 0 | G | . | 98.2%
| 227.6
/ ‑2.9
| 56 | coding (23/1488 nt) | sufB | component of SufBCD Fe‑S cluster assembly scaffold |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base . (26/29); minor base A (0/1); total (26/30) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTCATTACGCTTCGCCGAAATTGCGCGCACCACCTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCAGTTGCTTCAGTATTACGAGACATAGTACCGCCTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAATATCTGATTAAGTCCTTCACGAACGAAATCGACTTCCGTG > NC_000913/1763854‑1764120
|
cTCATTACGCTTCGCCGAAATTGCGCGCACCACCTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCtt < 1:1025784/139‑1 (MQ=255)
cTCATTACGCTTCGCCGAAATTGCGCGCACCACCTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCtt < 2:60610/139‑1 (MQ=255)
cTCATTACGCTTCGCCGAAATTGCGCGCACCACCTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCtt < 2:510023/139‑1 (MQ=255)
cTCATTACGCTTCGCCGAAATTGCGCGCACCACCTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCtt < 2:381888/139‑1 (MQ=255)
cTCATTACGCTTCGCCGAAATTGCGCGCACCACCTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCAAGGTTTTGACATCGTCA‑TTGCtt > 2:543011/1‑139 (MQ=255)
cGCCGAAATTGCGCGCACCACCTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACgag > 2:953642/1‑139 (MQ=255)
cGAAATTGCGCGCACCACCTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACa < 2:82794/139‑1 (MQ=255)
cgcgcACCACCTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCg > 1:252314/1‑139 (MQ=255)
accaccTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAg > 2:996503/1‑114 (MQ=255)
accaccTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAg < 1:996503/114‑1 (MQ=255)
tttATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCtt < 2:583817/139‑1 (MQ=255)
tATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTc < 2:99136/139‑1 (MQ=255)
cccTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCgcca < 1:11636/139‑1 (MQ=255)
cTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCgccaca > 2:843917/1‑139 (MQ=255)
tttGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑‑TGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCgc > 2:986207/1‑133 (MQ=255)
tttGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑‑TGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCgc < 1:986207/133‑1 (MQ=255)
ttGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCgccacagc < 2:638093/139‑1 (MQ=255)
ttGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCgccacagc > 1:249817/1‑139 (MQ=255)
ttGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCgccacagc > 2:674528/1‑139 (MQ=255)
aGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCAcat < 2:607166/139‑1 (MQ=255)
cTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACTTAGTACCGCTTATACCCCAAA‑GCTTTCCCCACAGCCAcattc > 1:1033096/1‑139 (MQ=255)
aTCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCAcattcatt > 1:457226/1‑139 (MQ=255)
cGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCCGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCt < 2:633164/139‑1 (MQ=255)
ggTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTg < 1:843917/139‑1 (MQ=255)
ggTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTg < 2:252314/139‑1 (MQ=255)
cgttggtAAATGGGTGAAGGATTCCTTTTTTTTAATTCAGCGGGCGGCCGTTCCAGTTTTTGCCACCG‑CAATTCTTTAAGTTTTACAGAACATATTACCGCTTATACCCCAAA‑GCTTTCGCAACGGCACCATCCATTCt < 2:821919/133‑1 (MQ=255)
gTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAAGGCTTTCGCCACAGCCACATTCATTCTg < 2:604566/139‑1 (MQ=255)
gCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCgcca < 2:92837/118‑1 (MQ=255)
gCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCgcca > 1:92837/1‑118 (MQ=255)
gCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCt > 2:384183/1‑139 (MQ=255)
ggTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGtt > 1:595402/1‑139 (MQ=255)
a‑gaaTCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGaa < 2:206136/139‑1 (MQ=255)
cttcttTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACg < 1:620664/63‑1 (MQ=255)
cttcttTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACg > 2:620664/1‑63 (MQ=255)
tcttTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAat < 1:42827/139‑1 (MQ=255)
ttttTAATTCCGCCGGCCGCCCGTCCAAGGTTTTACATCCTCA‑TTTCTTCAGTATTACCAGACCTAGTACCCCTTATACCCCCAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGGTGTGAAATTTGAatat < 1:543011/139‑1 (MQ=255)
tttATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTAGGCTTTAGGGTTGTGAAATTTGAatat < 1:674528/139‑1 (MQ=255)
ttATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAat > 1:1001100/1‑136 (MQ=255)
ttATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAat < 2:1001100/136‑1 (MQ=255)
tataATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGa > 2:803040/1‑133 (MQ=255)
tataATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGa < 1:803040/133‑1 (MQ=255)
ataATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCt > 1:328815/1‑108 (MQ=255)
ataATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCt < 2:328815/108‑1 (MQ=255)
cAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAATATCTGATTAAg > 1:291764/1‑139 (MQ=255)
cAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAATATCTGATTAAg < 2:756328/139‑1 (MQ=255)
cGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACg > 2:884981/1‑47 (MQ=255)
cGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACg < 1:884981/47‑1 (MQ=255)
cGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAggg < 2:337168/110‑1 (MQ=255)
cGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAggg > 1:337168/1‑110 (MQ=255)
cGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGa > 1:168222/1‑123 (MQ=255)
cGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGa < 2:168222/123‑1 (MQ=255)
cGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAATATCTGATTAAGTcc > 1:353045/1‑139 (MQ=255)
cGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAATATCTGATTAAGTcc > 1:838803/1‑139 (MQ=255)
cGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAATATCTGATTAAGTcc > 1:856333/1‑139 (MQ=255)
cGGGCCGCCGGTCCAGGTTTTGACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAATATCTGATTAAGTcc > 2:129615/1‑139 (MQ=255)
gACATCGTCA‑TTGCTTCAGTATTACGAGACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAATATCTGATTAAGTCCTTCACGAACGAAATCGACTTc > 2:142854/1‑139 (MQ=255)
tCGTCA‑TTGATTCAGTATTACGATACATAGTACCGCTTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAATATCTGATTAAGTCCTTCACGAACGAAATCGCCTTCCGTg > 2:924011/1‑139 (MQ=255)
|
CTCATTACGCTTCGCCGAAATTGCGCGCACCACCTCTTCGTTTATCCCCTTTGCCAGCTCATCGGTGGCTAACTGGGTGAA‑GAATCCTTCTTTATAATTCAGCGGGCCGCCGGTCCAGGTTTTGACATCGTCAGTTGCTTCAGTATTACGAGACATAGTACCGCCTATACCCCAAA‑GCTTTCGCCACAGCCACATTCATTCTGGGCTTTAGGGTTGTGAAATTTGAATATCTGATTAAGTCCTTCACGAACGAAATCGACTTCCGTG > NC_000913/1763854‑1764120
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
