Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I2 R1
|
765 |
53.2 |
2691310 |
93.4% |
2513683 |
103.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,254,003 |
C→T |
intergenic (+115/+40) |
ubiA → / ← plsB |
p‑hydroxybenzoate octaprenyltransferase/glycerol‑3‑phosphate O‑acyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,254,003 | 0 | C | T | 100.0%
| 157.5
/ NA
| 49 | intergenic (+115/+40) | ubiA/plsB | p‑hydroxybenzoate octaprenyltransferase/glycerol‑3‑phosphate O‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (27/22); total (27/22) |
TTTCTGATGATGTAAAAAAGCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCA > NC_000913/4253882‑4254125
|
tttCTGATGATGTAAAATAGCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTcg > 2:769517/1‑138 (MQ=255)
tttCTGATGATGTAAAAAAGCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTcg < 1:769517/138‑1 (MQ=255)
atgTAAAAAAGCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCgg < 1:1088835/139‑1 (MQ=255)
atgatCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGAtt < 1:344812/139‑1 (MQ=255)
atcatcCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCGTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTAcc > 2:1221074/1‑139 (MQ=255)
ttcttcTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCa < 1:1012925/105‑1 (MQ=255)
ttcttcTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCa > 2:1012925/1‑105 (MQ=255)
tcttctGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCg > 2:1243501/1‑139 (MQ=255)
ggTTGCCTGATGCGCGGCGCTTCTCAGGCCTAC‑‑‑ACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACtctc > 1:648564/1‑139 (MQ=37)
ccTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCaa > 1:663909/1‑100 (MQ=255)
ccTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCaa < 2:663909/100‑1 (MQ=255)
ccTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCaa < 2:575979/139‑1 (MQ=255)
tACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATaa > 1:369970/1‑52 (MQ=255)
tACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATaa < 2:369970/52‑1 (MQ=255)
cacaacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCt < 2:1079661/90‑1 (MQ=255)
cacaacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCt > 1:1079661/1‑90 (MQ=255)
cacaacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCa > 1:358056/1‑139 (MQ=255)
cacaacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCa > 1:1282148/1‑139 (MQ=255)
cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCg < 1:387605/64‑1 (MQ=255)
cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCg > 2:387605/1‑64 (MQ=255)
cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCAct > 1:188325/1‑102 (MQ=255)
cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCAct < 2:188325/102‑1 (MQ=255)
cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCaa < 2:555712/107‑1 (MQ=255)
cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCaa > 1:555712/1‑107 (MQ=255)
cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGt > 2:979282/1‑122 (MQ=255)
cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGt < 1:979282/122‑1 (MQ=255)
cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTcc > 1:917491/1‑139 (MQ=255)
cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTcc > 2:1329281/1‑139 (MQ=255)
acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCg < 2:759905/63‑1 (MQ=255)
acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCg > 1:759905/1‑63 (MQ=255)
acaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCg < 1:1329281/139‑1 (MQ=255)
aTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCa > 1:806830/1‑64 (MQ=255)
aTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCa < 2:806830/64‑1 (MQ=255)
aTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGcc > 1:815264/1‑139 (MQ=255)
aTCGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGcc > 2:585958/1‑139 (MQ=255)
cGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTc > 2:707287/1‑92 (MQ=255)
cGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTc < 1:707287/92‑1 (MQ=255)
cGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAg > 2:564846/1‑139 (MQ=255)
cGCAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAg < 2:358056/139‑1 (MQ=255)
cAATTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCa < 2:648564/139‑1 (MQ=255)
aaTTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGAt < 1:78669/71‑1 (MQ=255)
aaTTTATTGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGAt > 2:78669/1‑71 (MQ=255)
tGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGAtt < 1:445756/65‑1 (MQ=255)
tGAATTTGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGAtt > 2:445756/1‑65 (MQ=255)
ttGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCActct > 2:1063051/1‑84 (MQ=255)
ttGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCActct < 1:1063051/84‑1 (MQ=255)
tGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCt < 1:3360/64‑1 (MQ=255)
tGCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCt > 2:3360/1‑64 (MQ=255)
gCAGATTATGGAAGGCTGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCa > 2:880592/1‑139 (MQ=255)
|
TTTCTGATGATGTAAAAAAGCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAACTCCGCCAGCAACTGATAAACCTTCA > NC_000913/4253882‑4254125
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
