Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F1 I1 R1 757 76.1 3598070 93.4% 3360597 108.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,200,881 G→A A51V (GCC→GTC)  xisE ← e14 prophage, putative excisionase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,200,8810GA100.0% 290.4 / NA 89A51V (GCC→GTC) xisEe14 prophage, putative excisionase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (51/38);  total (51/38)

AAGCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGGCGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAG  >  NC_000913/1200753‑1201014
                                                                                                                                |                                                                                                                                      
aaGCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACg                                                                                                                              >  1:1739135/1‑139 (MQ=255)
 aGCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGc                                                                                                                             >  1:57707/1‑139 (MQ=255)
  gCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            <  2:773133/139‑1 (MQ=255)
  gCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            <  2:431306/139‑1 (MQ=255)
     gATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCa                                                                                                                                >  2:1756592/1‑132 (MQ=255)
     gATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCa                                                                                                                                <  1:1756592/132‑1 (MQ=255)
      atatAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            <  1:831505/135‑1 (MQ=255)
      atatAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            >  2:831505/1‑135 (MQ=255)
      atatAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑g                                                                                                                       >  2:277442/1‑139 (MQ=255)
      atatAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑g                                                                                                                       >  1:1628339/1‑139 (MQ=255)
               aGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCg                                                                                                              >  2:1798944/1‑139 (MQ=255)
                gggACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCgg                                                                                                             >  1:687250/1‑139 (MQ=255)
                gggACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCgg                                                                                                             >  2:179131/1‑139 (MQ=255)
                gggACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCgg                                                                                                             <  1:277442/139‑1 (MQ=255)
                gggACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCgg                                                                                                             >  2:1634016/1‑139 (MQ=255)
                       aaaCATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGtt                                                                                                      >  1:1313309/1‑139 (MQ=255)
                       aaaCATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGtt                                                                                                      >  1:957283/1‑139 (MQ=255)
                           attattCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCAt                                                                                                  <  2:1628339/139‑1 (MQ=255)
                                    aCGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTgg                                                                                         >  2:538886/1‑139 (MQ=255)
                                    aCGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTgg                                                                                         >  1:552387/1‑139 (MQ=255)
                                     cgcgGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGa                                                                                        >  2:51628/1‑139 (MQ=255)
                                      gcgGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       <  1:1634016/139‑1 (MQ=255)
                                      gcgGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       <  1:179131/139‑1 (MQ=255)
                                      gcgGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       <  2:552387/139‑1 (MQ=255)
                                         gTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACaaa                                                                                    >  2:890921/1‑139 (MQ=255)
                                         gTCTGGCTGCCATTACCCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACaaa                                                                                    >  2:334265/1‑139 (MQ=255)
                                          tCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACaaaa                                                                                   >  2:1354210/1‑139 (MQ=255)
                                                tGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAAtt                                                                             <  1:1798944/139‑1 (MQ=255)
                                                  ccATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAAc                                                                                                                <  2:501041/102‑1 (MQ=255)
                                                  ccATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAAc                                                                                                                >  1:501041/1‑102 (MQ=255)
                                                   cATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTg                                                                          <  2:1739135/139‑1 (MQ=255)
                                                    aTTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGc                                                                         >  1:862496/1‑139 (MQ=255)
                                                    aTTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGc                                                                         >  2:369437/1‑139 (MQ=255)
                                                    aTTACTCAAAATCCGTTGCAAAAGTAACGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGc                                                                         >  2:1390954/1‑139 (MQ=255)
                                                     ttACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCt                                                                        <  2:337413/139‑1 (MQ=255)
                                                     ttACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCt                                                                        <  1:51628/139‑1 (MQ=255)
                                                     ttACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCt                                                                        <  2:1313309/139‑1 (MQ=255)
                                                        cTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACTAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAAc                                                                                                                >  2:925049/1‑96 (MQ=255)
                                                        cTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAAc                                                                                                                <  1:925049/96‑1 (MQ=255)
                                                                ccGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAacga                                                             <  2:351517/139‑1 (MQ=255)
                                                                  gTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAaaat                                                                                  <  1:614332/116‑1 (MQ=255)
                                                                  gTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAaaat                                                                                  >  2:614332/1‑116 (MQ=255)
                                                                  gTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAAtt                                                                             <  1:844215/121‑1 (MQ=255)
                                                                  gTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAAtt                                                                             >  2:844215/1‑121 (MQ=255)
                                                                   ttGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGc                                                          >  2:1350560/1‑139 (MQ=255)
                                                                   ttGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGc                                                          <  1:890921/139‑1 (MQ=255)
                                                                              aTGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       <  2:1170733/99‑1 (MQ=255)
                                                                              aTGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       >  1:1170733/1‑99 (MQ=255)
                                                                              aTGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGacac                                               >  2:970321/1‑139 (MQ=255)
                                                                                      tttttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            <  2:1395807/55‑1 (MQ=255)
                                                                                      tttttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCa                                                                                                                            >  1:1395807/1‑55 (MQ=255)
                                                                                      tttttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCg                                                                                             <  2:1316617/85‑1 (MQ=255)
                                                                                      tttttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCg                                                                                             >  1:1316617/1‑85 (MQ=255)
                                                                                      tttttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTggag                                       >  2:96343/1‑139 (MQ=255)
                                                                                         ttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGAt                                    <  1:1350560/139‑1 (MQ=255)
                                                                                         ttCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGAt                                    <  1:1390954/139‑1 (MQ=255)
                                                                                             tGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGcc                                                                                                           <  2:819265/64‑1 (MQ=255)
                                                                                             tGATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGcc                                                                                                           >  1:819265/1‑64 (MQ=255)
                                                                                              gATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTgg                                         >  2:238570/1‑129 (MQ=255)
                                                                                              gATTACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTgg                                         <  1:238570/129‑1 (MQ=255)
                                                                                                 tACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTg                            <  1:334265/139‑1 (MQ=255)
                                                                                                 tACAGGTGTTACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTg                            >  1:1654496/1‑139 (MQ=255)
                                                                                                         ttACCAACTCCCCAACTAACTCGACGTGCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGAc                                                                                       <  1:1270159/72‑1 (MQ=255)
                                                                                                         ttACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                <  2:403959/111‑1 (MQ=255)
                                                                                                         ttACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                >  1:403959/1‑111 (MQ=255)
                                                                                                         ttACCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGCTTCATGGCCGGTGGAc                                                                                       >  2:1270159/1‑72 (MQ=255)
                                                                                                           aCCAACTCCCCAACTAACTCGACGTCCTCACGTACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTcag                  >  1:1066165/1‑139 (MQ=255)
                                                                                                           aCCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                <  2:607698/109‑1 (MQ=255)
                                                                                                           aCCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                >  1:607698/1‑109 (MQ=255)
                                                                                                           aCCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTcag                  >  2:1401954/1‑139 (MQ=255)
                                                                                                           aCCAACTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTcag                  >  2:1482189/1‑139 (MQ=255)
                                                                                                              aaCTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTcagcag               >  1:670758/1‑139 (MQ=255)
                                                                                                                cTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGa                                                  <  2:248760/102‑1 (MQ=255)
                                                                                                                cTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGa                                                  >  1:248760/1‑102 (MQ=255)
                                                                                                                cTCCCCAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGcc             >  1:1643459/1‑139 (MQ=255)
                                                                                                                  ccccAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCa           <  1:369437/139‑1 (MQ=255)
                                                                                                                   cccAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCAt          >  2:1756571/1‑139 (MQ=255)
                                                                                                                   cccAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCAt          >  1:1217174/1‑139 (MQ=255)
                                                                                                                     cAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                >  1:123231/1‑99 (MQ=255)
                                                                                                                     cAACTAACTCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGaca                                                <  2:123231/99‑1 (MQ=255)
                                                                                                                       actaactCTACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGTATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCAttctt      <  2:1066165/139‑1 (MQ=255)
                                                                                                                           actCGACGTCCTCACGCACTCGGCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGac                                                 <  2:1227604/93‑1 (MQ=255)
                                                                                                                           actCGACGTCCTCACGCACTCGGCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGac                                                 >  1:1227604/1‑93 (MQ=255)
                                                                                                                           actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTgg                                                                                         <  1:205404/52‑1 (MQ=255)
                                                                                                                           actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTgg                                                                                         >  2:205404/1‑52 (MQ=255)
                                                                                                                           actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCa                                                                   >  1:1723534/1‑74 (MQ=255)
                                                                                                                           actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCa                                                                   <  2:1723534/74‑1 (MQ=255)
                                                                                                                           actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAag  >  2:1706242/1‑139 (MQ=255)
                                                                                                                           actCGACGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAag  >  2:917543/1‑139 (MQ=255)
                                                                                                                                |                                                                                                                                      
AAGCGGATATAAGTTAGGGACTGAAACATTATTCTTACGCGGTCTGGCTGCCATTACTCAAAATCCGTTGCAAAAGTAATGAGTCATTTTTCTTGATTACAGGTGTTACCAACTCCCCAACTAACTCGGCGTCCTCACGCACTC‑GCCATAACCGGCCTTGTTTCATGGCCGGTGGACAAAATAAATTCTGCTTAGCATAACGACGCAATGTGGACACACTTGGAGGATTACTTCTGTATTTTTCAGCAGCCCATTCTTCAAG  >  NC_000913/1200753‑1201014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A