Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I1 R1	757	76.1	3598070	93.4%	3360597	108.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,335,862	A→G	D11G (GAC→GGC)	acnA →	aconitate hydratase 1, aconitase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,335,862	0	A	G	100.0%	310.2 / NA	87	D11G (GAC→GGC)	acnA	aconitate hydratase 1, aconitase A
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (49/38); total (49/38)

GGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACCTGCTGCGCTGGCAGGATGGT  >  NC_000913/1335735‑1335995

gggTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAgg                                                                                                                            >  2:251232/1‑139 (MQ=255)

         tCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATa                                                                                                                   <  1:23348/139‑1 (MQ=255)

                gTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTa                                                                                                            >  2:1176738/1‑139 (MQ=255)

                gTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTa                                                                                                            >  2:1502528/1‑139 (MQ=255)

                   aCGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACg                                                                                                                                   <  2:861252/113‑1 (MQ=255)

                   aCGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACg                                                                                                                                   >  1:861252/1‑113 (MQ=255)

                   aCGCGATGTTTGTGTTATCATTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCCATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAATCTTACCa                                                                                                         <  1:1176738/139‑1 (MQ=255)

                         tGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCActacta                                                                                                   >  1:1301036/1‑139 (MQ=255)

                         tGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCATGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCActacta                                                                                                   >  2:1181239/1‑139 (MQ=255)

                                   aTCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTAcc                                                                                                          <  1:1262059/122‑1 (MQ=255)

                                   aTCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTAcc                                                                                                          >  2:1262059/1‑122 (MQ=255)

                                   aTCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTATCACTACTACAGCCTGCCg                                                                                         >  2:1210002/1‑139 (MQ=255)

                                        tAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTtgc                                                                                    <  1:1502528/139‑1 (MQ=255)

                                              tCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCa                                                                                                         <  2:71695/112‑1 (MQ=255)

                                              tCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCa                                                                                                         >  1:71695/1‑112 (MQ=255)

                                               cACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTCGCTGCTaaa                                                                             >  1:1162124/1‑139 (MQ=255)

                                                  ccTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACtt                                                                                                             <  2:471709/104‑1 (MQ=255)

                                                  ccTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACtt                                                                                                             >  1:471709/1‑104 (MQ=255)

                                                  acTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCa                                                                          >  1:1122774/2‑139 (MQ=255)

                                                     gAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTAc                                                                                                           >  2:421433/1‑103 (MQ=255)

                                                     gAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCGACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTAc                                                                                                           <  1:421433/103‑1 (MQ=255)

                                                      aaGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTgg                                                                      >  1:953343/1‑139 (MQ=255)

                                                      aaGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTgg                                                                      <  1:137575/139‑1 (MQ=255)

                                                           aaTCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACt                                                                                                              >  2:298566/1‑94 (MQ=255)

                                                           aaTCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACt                                                                                                              <  1:298566/94‑1 (MQ=255)

                                                           aaTCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGat                                                                 >  2:475267/1‑139 (MQ=255)

                                                            aTCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGc                                                                                               >  1:1140115/1‑108 (MQ=255)

                                                            aTCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGata                                                                >  1:848380/1‑139 (MQ=255)

                                                            aTCAGGGCTTCGCAACCCTCTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGc                                                                                               <  2:1140115/108‑1 (MQ=255)

                                                            aTCAGGGCTTCGCAACACTGTCATTAAGGAGGAGCTATGTCGTCAACACTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAACACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGCGCGata                                                                >  2:553650/1‑139 (MQ=255)

                                                              cAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATc                                                              <  1:1181239/139‑1 (MQ=255)

                                                               aGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACAAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCa                                                             <  2:953343/139‑1 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGc                                                                                                                               >  2:783368/1‑72 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGc                                                                                                                               <  1:783368/72‑1 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACtt                                                                                                             >  2:392501/1‑90 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACtt                                                                                                             <  1:392501/90‑1 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACtt                                                                                                             >  2:1240764/1‑90 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACtt                                                                                                             <  1:1240764/90‑1 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCa                                                             <  2:1694712/138‑1 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCa                                                             >  1:1694712/1‑138 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCAc                                                            >  2:1793085/1‑139 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCAc                                                            >  2:143661/1‑139 (MQ=255)

                                                                gggCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCAc                                                            >  1:226097/1‑139 (MQ=255)

                                                                    ttCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGt                                                        <  1:1210002/139‑1 (MQ=255)

                                                                    ttCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGt                                                        <  1:143661/139‑1 (MQ=255)

                                                                     tCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTc                                                       >  2:1249009/1‑139 (MQ=255)

                                                                      cGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTAc                                                                                                           >  2:1731591/1‑86 (MQ=255)

                                                                      cGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTAc                                                                                                           <  1:1731591/86‑1 (MQ=255)

                                                                      cGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCt                                                      >  2:100319/1‑139 (MQ=255)

                                                                        cAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGACGATATCACCCGTCTAc                                                    <  2:1122774/139‑1 (MQ=255)

                                                                              tGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTAcc                                                                                                          <  2:264068/79‑1 (MQ=255)

                                                                              tGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTAcc                                                                                                          >  1:264068/1‑79 (MQ=255)

                                                                              tGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGt                                                        >  2:1327330/1‑129 (MQ=255)

                                                                              tGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGt                                                        <  1:1327330/129‑1 (MQ=255)

                                                                                tCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTgg                                                                      >  1:861804/1‑113 (MQ=255)

                                                                                tCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTgg                                                                      <  2:861804/113‑1 (MQ=255)

                                                                                tCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCa                                            >  2:1123347/1‑139 (MQ=255)

                                                                                  aTTAAGGAAGAGCTATGTCGTCAACCCTACCAAAAGCCAGTAAGGGCACGTTGCAAGCCAAAGATAAAACTTACCACTACCTCCGCCTGCCGCTTGGCGGTTAATCACTGGGCGATATCACCCGTCTACCCAAGTCACt                                          <  2:1301036/139‑1 (MQ=255)

                                                                                    tAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCa                                        <  1:475267/139‑1 (MQ=255)

                                                                                     aaGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCaa                                       >  1:295304/1‑139 (MQ=255)

                                                                                         aggagCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGtt                                   >  1:165211/1‑139 (MQ=255)

                                                                                          ggagCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAGAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGttt                                  >  1:371033/1‑139 (MQ=255)

                                                                                          ggagCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGttt                                  >  1:877583/1‑139 (MQ=255)

                                                                                            agCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTg                                >  2:1452900/1‑139 (MQ=255)

                                                                                            agCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTg                                >  1:863584/1‑139 (MQ=255)

                                                                                              cTATGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCt                              <  2:848380/139‑1 (MQ=255)

                                                                                                aTGTCGTCAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCg                            <  1:1793085/139‑1 (MQ=255)

                                                                                                  gtcgtcAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTgg                                                                      >  2:985750/1‑95 (MQ=255)

                                                                                                  gtcgtcAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTgg                                                                      <  1:985750/95‑1 (MQ=255)

                                                                                                   tcgtcAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCg                                                         >  1:1144218/1‑107 (MQ=255)

                                                                                                   tcgtcAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCg                                                         <  2:1144218/107‑1 (MQ=255)

                                                                                                     gtcAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATa                                                                                                                   <  2:988097/47‑1 (MQ=255)

                                                                                                     gtcAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATa                                                                                                                   >  1:988097/1‑47 (MQ=255)

                                                                                                     gtcAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAAc                       >  2:163966/1‑139 (MQ=255)

                                                                                                      tcAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGcc                                                                                                                          <  1:1467414/39‑1 (MQ=255)

                                                                                                      tcAACCCTACGAGAAGCCAGTAAGGGCACGTTGCAGGcc                                                                                                                          >  2:1467414/1‑39 (MQ=255)

                                                                                                          cccTACGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACctgct                  <  1:100319/139‑1 (MQ=255)

                                                                                                              aCGAGAAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACCTGCTgcgc              >  1:1713297/1‑139 (MQ=255)

                                                                                                                 agaAGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACCTGCTGCGCTgg           <  2:877583/139‑1 (MQ=255)

                                                                                                                    aGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAAt                                                                            >  2:380241/1‑71 (MQ=255)

                                                                                                                    aGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAAt                                                                            <  1:380241/71‑1 (MQ=255)

                                                                                                                    aGCCAGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACCTGCTGCGCTGGCAg        >  1:1620701/1‑139 (MQ=255)

                                                                                                                        aGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACCTGCTGCGCTGGCGGGATg    >  1:383398/1‑139 (MQ=255)

                                                                                                                        aGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACCTGCTGCGCTGGCAg        <  1:1587415/135‑1 (MQ=255)

                                                                                                                        aGTAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACCTGCTGCGCTGGCAg        >  2:1587415/1‑135 (MQ=255)

                                                                                                                          tAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACCTGCTGCGCTGGCAGGATgga  <  1:1123347/139‑2 (MQ=255)

                                                                                                                          tAAGGGCACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACCTGCTGCGCTGGCAGGATGGt  <  2:165211/139‑1 (MQ=255)

GGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTTGCTGCTAAATCACTGGGCGATATCACCCGTCTACCCAAGTCACTCAAAGTTTTGCTCGAAAACCTGCTGCGCTGGCAGGATGGT  >  NC_000913/1335735‑1335995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A