Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I1 R1	757	76.1	3598070	93.4%	3360597	108.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,624,357	(T)_8→7	coding (141/393 nt)	ydeI ←	hydrogen peroxide resistance OB fold protein, putative periplasmic protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,624,350	0	T	.	100.0%	286.6 / NA	70	coding (148/393 nt)	ydeI	hydrogen peroxide resistance OB fold protein, putative periplasmic protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (36/34); total (36/34)

GCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCATTTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATA  >  NC_000913/1624214‑1624478

gCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCAttt                                                                                                                                >  1:1230919/1‑139 (MQ=255)

 ccGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCAtttt                                                                                                                               >  1:462932/1‑139 (MQ=255)

               aCATTAATTTCACCGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGt                                                                                                                >  1:429740/1‑139 (MQ=255)

               aCATTAATTTCACCGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGt                                                                                                                <  1:1694068/139‑1 (MQ=255)

                 aTTAATTTCACCGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTc                                                                                                              >  1:893434/1‑139 (MQ=255)

                         cACCGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAg                                                                                                      <  2:187960/139‑1 (MQ=255)

                         cACCGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAg                                                                                                      <  1:216689/139‑1 (MQ=255)

                         cACCGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAg                                                                                                      <  2:462932/139‑1 (MQ=255)

                           ccGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    >  2:1629954/1‑139 (MQ=255)

                           ccGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    <  2:429740/139‑1 (MQ=255)

                            cGCTCTTATCGCGAAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    <  1:863322/139‑1 (MQ=255)

                                   aTCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    >  1:520384/1‑131 (MQ=255)

                                   aTCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    <  2:520384/131‑1 (MQ=255)

                                   aTCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTa                                                                                            >  2:1090060/1‑139 (MQ=255)

                                                       tCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTgg                                                                         >  2:99701/1‑139 (MQ=255)

                                                                ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    <  1:746305/103‑1 (MQ=255)

                                                                ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    >  2:746305/1‑103 (MQ=255)

                                                                 tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGcatcat                                                                                                                    <  1:1431967/86‑1 (MQ=255)

                                                                 tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGcatcat                                                                                                                    >  2:1431967/1‑86 (MQ=255)

                                                                 tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGcatca                                                                                                                     <  2:394926/85‑1 (MQ=255)

                                                                 tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGcatca                                                                                                                     >  1:394926/1‑85 (MQ=255)

                                                                 tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGAt                                                                                                        >  1:672546/1‑98 (MQ=255)

                                                                 tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGAt                                                                                                        <  2:672546/98‑1 (MQ=255)

                                                                   tgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑‑TTTTTTGCATCCTTGGTTCCGCCGTTACCAACCTCTTATGCATTGAGCGGCGGTGGCGCTGCCTTCTGt                                                            >  1:766561/1‑139 (MQ=255)

                                                                      gaAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa                                                                                       >  2:281074/1‑110 (MQ=255)

                                                                      gaAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa                                                                                       <  1:281074/110‑1 (MQ=255)

                                                                        aaTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    <  2:882485/95‑1 (MQ=255)

                                                                        aaTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    >  1:882485/1‑95 (MQ=255)

                                                                        aaTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCa                                                                                                   >  1:551612/1‑96 (MQ=255)

                                                                        aaTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCa                                                                                                   <  2:551612/96‑1 (MQ=255)

                                                                        aaTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTa                                                        >  2:598391/1‑139 (MQ=255)

                                                                         aTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaa                                                       <  1:1691143/139‑1 (MQ=255)

                                                                          tCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa                                                      <  2:1320810/139‑1 (MQ=255)

                                                                          tCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa                                                      <  1:99701/139‑1 (MQ=255)

                                                                               ttACCGCGTAGTAAACCCGAGGCCCCATCGTCCATGGTTTTTGCGAATTCAACGGTC‑‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGccc                                                <  2:766561/139‑1 (MQ=255)

                                                                                    gcgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                <  1:1478250/119‑1 (MQ=255)

                                                                                    gcgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                >  2:1478250/1‑119 (MQ=255)

                                                                                    gcgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGt                                            >  2:1711670/1‑139 (MQ=255)

                                                                                     cgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTc                                           >  1:1726089/1‑139 (MQ=255)

                                                                                     cgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTACATCCTGTTTTaaa                                                      <  1:396368/128‑1 (MQ=255)

                                                                                     cgTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTACATCCTGTTTTaaa                                                      >  2:396368/1‑128 (MQ=255)

                                                                                      gTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCa                                          >  2:1390534/1‑139 (MQ=255)

                                                                                       tAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCAt                                         >  2:363922/1‑139 (MQ=255)

                                                                                        aGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGa                                                                                                         <  1:1230145/74‑1 (MQ=255)

                                                                                        aGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGa                                                                                                         >  2:1230145/1‑74 (MQ=255)

                                                                                        aGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATTGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa                                                      <  2:123983/125‑1 (MQ=255)

                                                                                        aGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa                                                      >  1:123983/1‑125 (MQ=255)

                                                                                            aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCAtttttttgc                                                                                                                          <  1:169991/54‑3 (MQ=255)

                                                                                            aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCAtttttttgc                                                                                                                          >  2:169991/1‑52 (MQ=255)

                                                                                            aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc                                    <  1:363922/139‑1 (MQ=255)

                                                                                             aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                   <  2:893434/139‑1 (MQ=255)

                                                                                                cGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACg                                >  2:1257229/1‑139 (MQ=255)

                                                                                                   aGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                   <  1:1731387/133‑1 (MQ=255)

                                                                                                   aGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                   >  2:1731387/1‑133 (MQ=255)

                                                                                                    gcgcCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGcatcat                                                                                                                    <  1:1212832/51‑1 (MQ=255)

                                                                                                    gcgcCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGcatcat                                                                                                                    <  2:843982/51‑1 (MQ=255)

                                                                                                    gcgcCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGcatcat                                                                                                                    >  1:843982/1‑51 (MQ=255)

                                                                                                    gcgcCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGcatcat                                                                                                                    >  2:1212832/1‑51 (MQ=255)

                                                                                                    gcgcCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    <  1:735876/67‑1 (MQ=255)

                                                                                                    gcgcCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGcc                                                                                                    >  2:735876/1‑67 (MQ=255)

                                                                                                    gcgcCATCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATa                            >  2:168670/1‑139 (MQ=255)

                                                                                                          tCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCGTGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt                      <  2:1230919/139‑1 (MQ=255)

                                                                                                          tCGTGCATGGTTTTTGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt                      <  1:1390534/139‑1 (MQ=255)

                                                                                                                    tttttGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCTGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa            >  2:623610/1‑139 (MQ=255)

                                                                                                                    tttttGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa            <  1:1711670/139‑1 (MQ=255)

                                                                                                                    tttttGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa            <  1:598391/139‑1 (MQ=255)

                                                                                                                      tttGCGAAATCAACGGTCA‑TTTTTTTGCATCATCAGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACt          >  1:1456078/1‑139 (MQ=255)

                                                                                                                       ttGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACtt         >  1:410350/1‑139 (MQ=255)

                                                                                                                        tGCGAAATCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTg        >  1:479597/1‑139 (MQ=255)

                                                                                                                            aaaTCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa                                                      >  2:1179683/1‑89 (MQ=255)

                                                                                                                            aaaTCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa                                                      <  1:1179683/89‑1 (MQ=255)

                                                                                                                              aTCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAg                                                                                                      >  2:967220/1‑39 (MQ=37)

                                                                                                                              aTCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAg                                                                                                      <  1:967220/39‑1 (MQ=37)

                                                                                                                              aTCAACGGTCA‑TTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATa  >  1:978139/1‑139 (MQ=255)

GCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCG‑AAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGTCATTTTTTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATA  >  NC_000913/1624214‑1624478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A