Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F1 I1 R1 757 76.1 3598070 93.4% 3360597 108.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,939,673 T→C N174S (AAC→AGC)  lpxM ← myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,939,6730TC100.0% 275.8 / NA 76N174S (AAC→AGC) lpxMmyristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (39/37);  total (39/37)

CTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGTTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCT  >  NC_000913/1939549‑1939802
                                                                                                                             |                                                                                                                                 
ctctGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCa                                                                                                                     >  2:335302/1‑139 (MQ=255)
    gggCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCaaaaa                                                                                                                 >  1:316328/1‑139 (MQ=255)
         aTGATCCTGATCGGGTAAATAATATCCCCAGTACACCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCggg                                                                                                            <  1:335302/139‑1 (MQ=255)
          tGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAAt                                                                                                                       >  2:1443363/1‑127 (MQ=255)
          tGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAAt                                                                                                                       <  1:1443363/127‑1 (MQ=255)
           gATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACAt                                                                                                                          >  1:660521/1‑123 (MQ=255)
           gATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACAt                                                                                                                          <  2:660521/123‑1 (MQ=255)
             tcttGATCGGTTAAATAATACCCCCGGTACCCCTGCCGACCCGCTTGAATGAATGGTTT‑ATTCCCTTAATTCTCCGAAGCAAGACGACCGCCAAAGCGA‑GGCGCAACGTTCCCCAGACCTTAACCAAAACCCGGTTggc                                                                                                       <  1:514625/136‑3 (MQ=255)
              ccTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       <  2:564201/139‑1 (MQ=255)
                tGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCt                                                                                                     <  2:316328/139‑1 (MQ=255)
                      ggTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       >  2:785649/1‑131 (MQ=255)
                      ggTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       <  1:785649/131‑1 (MQ=255)
                       gTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       <  1:816933/130‑1 (MQ=255)
                       gTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       >  2:816933/1‑130 (MQ=255)
                       gTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATg                                                                                              >  2:514625/1‑139 (MQ=255)
                       gTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATg                                                                                              >  2:222394/1‑139 (MQ=255)
                       gTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTAATTATg                                                                                              >  1:95906/1‑139 (MQ=255)
                             aataTCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTAATTATGGAACAt                                                                                        <  2:95906/139‑1 (MQ=255)
                               tatCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCg                                                                                      <  1:222394/139‑1 (MQ=255)
                                 tCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       <  1:1203830/120‑1 (MQ=255)
                                 tCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       >  2:1203830/1‑120 (MQ=255)
                                 tCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCt                                                                                    >  1:992742/1‑139 (MQ=255)
                                      aGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCAt                                                                               >  1:800971/1‑139 (MQ=255)
                                       gTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCAtt                                                                              <  2:151410/139‑1 (MQ=255)
                                           cccTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCt                                                                                                     <  2:601969/112‑1 (MQ=255)
                                           cccTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCt                                                                                                     >  1:601969/1‑112 (MQ=255)
                                             cTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       >  2:725505/1‑108 (MQ=255)
                                             cTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       <  1:725505/108‑1 (MQ=255)
                                             cTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGaa                                                                                           <  1:1178706/120‑1 (MQ=255)
                                             cTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGaa                                                                                           >  2:1178706/1‑120 (MQ=255)
                                             cTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCg                                                                                      >  2:521676/1‑125 (MQ=255)
                                             cTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCg                                                                                      <  1:521676/125‑1 (MQ=255)
                                             cTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGc                                                                        >  1:856060/1‑139 (MQ=255)
                                             cTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGc                                                                        >  2:1293192/1‑139 (MQ=255)
                                                  gTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       <  1:1082927/103‑1 (MQ=255)
                                                  gTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       >  2:1082927/1‑103 (MQ=255)
                                                    aCCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCg                                                                 <  1:191097/139‑1 (MQ=255)
                                                    aCCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCg                                                                 >  2:1569947/1‑139 (MQ=255)
                                                    aCCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAACCAAAAACCGGGTTGCCCt                                                                                                     >  1:1525147/1‑103 (MQ=255)
                                                    aCCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAACCAAAAACCGGGTTGCCCt                                                                                                     <  2:1525147/103‑1 (MQ=255)
                                                       gACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       >  1:1492876/1‑98 (MQ=255)
                                                       gACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       <  2:1492876/98‑1 (MQ=255)
                                                        aCTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGc                                                                                                        >  1:82837/1‑96 (MQ=255)
                                                        aCTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGc                                                                                                        <  2:82837/96‑1 (MQ=255)
                                                          tGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCa                                                           >  2:1740633/1‑139 (MQ=255)
                                                            gATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       <  1:891194/93‑1 (MQ=255)
                                                            gATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       >  2:891194/1‑93 (MQ=255)
                                                                 aTGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCAt                                                    <  1:127307/139‑1 (MQ=255)
                                                                  tGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGTCCTTGCGAGGCCATCAGCATg                                                   >  2:862707/1‑139 (MQ=255)
                                                                          tACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCAtttt                                                                            <  1:231341/106‑1 (MQ=255)
                                                                          tACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCAtttt                                                                            >  2:231341/1‑106 (MQ=255)
                                                                             cGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATc                                        <  1:1569947/139‑1 (MQ=255)
                                                                             cGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATc                                        <  2:800971/139‑1 (MQ=255)
                                                                              gTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGc                                                 <  1:930264/129‑1 (MQ=255)
                                                                              gTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGc                                                 >  2:930264/1‑129 (MQ=255)
                                                                               tCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCt                                                                                                     >  1:464852/1‑76 (MQ=255)
                                                                               tCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCt                                                                                                     <  2:464852/76‑1 (MQ=255)
                                                                               tCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTg                                                                                   >  1:678347/1‑94 (MQ=255)
                                                                               tCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTg                                                                                   <  2:678347/94‑1 (MQ=255)
                                                                               tCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGa                                      >  2:1786036/1‑139 (MQ=255)
                                                                                         cATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCggg                                                                                                            <  1:1541542/59‑1 (MQ=255)
                                                                                         cATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCggg                                                                                                            >  2:1541542/1‑59 (MQ=255)
                                                                                            gC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTg                         <  2:856060/139‑1 (MQ=255)
                                                                                            gC‑AGACGACCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCACAACCGTg                         <  1:1786036/139‑1 (MQ=255)
                                                                                                gacgacCGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCgg                      >  2:1279121/1‑139 (MQ=255)
                                                                                                     ccGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGct                                                                                                       <  1:1121054/53‑2 (MQ=255)
                                                                                                     ccGCCAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       >  2:1121054/1‑53 (MQ=255)
                                                                                                        ccAAAGCGACTACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       <  1:1571231/50‑1 (MQ=255)
                                                                                                        ccAAAGCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGcc                                                                                                       >  2:1571231/1‑50 (MQ=255)
                                                                                                             gCGACGACGCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATa         >  1:622680/1‑139 (MQ=255)
                                                                                                                acgacgCACCGTGCTCCAGACATAATCAAAAACCGGGTTGc                                                                                                        <  2:382624/41‑1 (MQ=255)
                                                                                                                acgacgCACCGTGCTCCAGACATAATCAAAAACCGGGTTGc                                                                                                        >  1:382624/1‑41 (MQ=255)
                                                                                                                acgacgCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACt      >  1:1049409/1‑139 (MQ=255)
                                                                                                                    cgCACCGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTtct  <  2:992742/139‑1 (MQ=255)
                                                                                                                        ccGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGc                                                      >  2:1537721/1‑83 (MQ=255)
                                                                                                                        ccGTGCTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGc                                                      <  1:1537721/83‑1 (MQ=255)
                                                                                                                             |                                                                                                                                 
CTCTGGGCCATGATCCTGATCGGGTAAATAATATCCCCAGTACCCCTGACGTACCGACTGGATGAATGGTTTAATACCGTCATTTCTCGCATGC‑AGACGACCGCCAAAGCGACGACGCACCGTGTTCCAGACATAATCAAAAACCGGGTTGCCCTGATTATGGAACATCGCTGCCATTTTCTGCCCTTGCGAGGCCATCAGCATGGCAGGAATATCGACGGCCCAACCGTGCGGCACCAGAAAGATAACTTTCT  >  NC_000913/1939549‑1939802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A