Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 773 79.9 4112934 92.2% 3792125 104.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 883,665 IS1 (–) +9 bp [mdfA] [mdfA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 19796 =NA (NA)85 (1.030) 51/206 0.3 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 883673 0 (0.000)coding (1/1233 nt) mdfA multidrug efflux system protein
* ? NC_000913 = 258675NA (NA)80 (0.970) 52/206 0.2 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 883665 = 0 (0.000)intergenic (‑277/‑8) ybjG/mdfA undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein

CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/19933‑19796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTCTTT  <  NC_000913/883673‑883544
                                                                                                                                                                                                                                                                            
CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCT                                                                                                                                   >  2:1524247/1‑139
         AATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCT                                                                                                                          >  2:1104271/1‑139
          ATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTT                                                                                                                         <  1:1319151/139‑1
            CTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCG                                                                                                                       <  2:1440584/139‑1
               AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCA                                                                                                                    >  2:454587/1‑139
                     CACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCG                                                                                                                       >  1:348502/1‑130
                     CACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCG                                                                                                                       <  2:348502/130‑1
                     CACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCACCAATAATA                                                                                                              <  1:1524247/139‑1
                      ACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAA                                                                                                             <  2:146165/139‑1
                             ACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCA                                                                                                      <  1:743137/139‑1
                               GGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGA                                                                                                    >  2:1161225/1‑139
                                GCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCCTCG                                                                                                                       >  1:1230234/1‑119
                                GCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCCTCG                                                                                                                       <  2:1230234/119‑1
                                         GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCCGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCT                                                                                                                          <  1:146863/107‑1
                                         GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCCGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCT                                                                                                                          >  2:146863/1‑107
                                             TCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCG                                                                                      <  2:224581/139‑1
                                             TCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCG                                                                                      <  1:454587/139‑1
                                             TCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCG                                                                                      <  1:26888/139‑1
                                             TCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCG                                                                                      <  1:1161225/139‑1
                                                        CTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAG                                                                           >  2:885607/1‑139
                                                                   TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTT                                                                >  2:1729395/1‑139
                                                                         TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGC                                                          <  2:511331/139‑1
                                                                           CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTG                                                        >  1:1719224/1‑139
                                                                           CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTG                                                        >  1:1090476/1‑139
                                                                           CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCG                                                                                                        >  2:923589/1‑91
                                                                           CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCG                                                                                                        <  1:923589/91‑1
                                                                             TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCA                                                                                                      >  2:1441160/1‑91
                                                                             TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCA                                                                                                      <  1:1441160/91‑1
                                                                                 AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCA                                                  <  1:1104271/139‑1
                                                                                     TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGT                                              >  2:508796/1‑139
                                                                                     TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGT                                              <  2:677514/139‑1
                                                                                        TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCG                                                                                      >  1:1451675/1‑96
                                                                                        TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCG                                                                                      <  2:1451675/96‑1
                                                                                         CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAG                                          >  2:556466/1‑139
                                                                                          GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGC                                         >  1:511745/1‑139
                                                                                          GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCA                                                  <  2:2020385/130‑1
                                                                                          GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCA                                                  >  1:2020385/1‑130
                                                                                           GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCA                                        <  2:511745/139‑1
                                                                                           GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCA                                        <  2:1719224/139‑1
                                                                                                   CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTA                                <  1:508796/139‑1
                                                                                                      AACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCA                                        >  2:2056420/1‑128
                                                                                                      AACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCA                                        <  1:2056420/128‑1
                                                                                                      AACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTG                                                              <  2:374825/106‑1
                                                                                                      AACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTG                                                              >  1:374825/1‑106
                                                                                                       ACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGC                                                                                                       <  2:1409991/64‑1
                                                                                                       ACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGC                                                                                                       >  1:1409991/1‑64
                                                                                                           AAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCA                                                  <  1:392470/113‑1
                                                                                                           AAAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCA                                                  >  2:392470/1‑113
                                                                                                            AAACACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTAC                       <  1:556466/139‑1
                                                                                                                ACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAG                                                                                                     >  1:869434/1‑57
                                                                                                                ACTATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAG                                                                                                     <  2:869434/57‑1
                                                                                                                  TATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTAT                 >  2:75411/1‑139
                                                                                                                  TATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTAC                       >  1:1910337/1‑133
                                                                                                                  TATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTAC                       <  2:1910337/133‑1
                                                                                                                  TATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGT                                              <  1:642688/110‑1
                                                                                                                  TATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGT                                              >  2:642688/1‑110
                                                                                                                   ATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCT                                                         <  1:1378182/98‑1
                                                                                                                   ATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCA                                                                                                      <  2:669916/53‑1
                                                                                                                   ATCAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCA                                                                                                      >  1:669916/1‑53
                                                                                                                   ATCAATAAGCTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCT                                                         >  2:1378182/1‑98
                                                                                                                     CAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTT                                 >  1:217642/1‑120
                                                                                                                     CAATAAGTTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTT                                 <  2:217642/120‑1
                                                                                                                            TTGGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTT       >  1:2023593/1‑139
                                                                                                                              GGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTC     >  2:1690080/1‑139
                                                                                                                              GGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGT                   >  1:587422/1‑125
                                                                                                                              GGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGT                   <  2:587422/125‑1
                                                                                                                              GGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATT                            <  1:505553/116‑1
                                                                                                                              GGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATT                            >  2:505553/1‑116
                                                                                                                              GGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCA                                                  <  1:1585767/94‑1
                                                                                                                              GGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCA                                                  >  2:1585767/1‑94
                                                                                                                              GGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCT                                                         >  1:157285/1‑87
                                                                                                                              GGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCT                                                         <  2:157285/87‑1
                                                                                                                              GGAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAATTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTC     >  1:468026/1‑139
                                                                                                                               GAGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTCT    >  2:247962/1‑139
                                                                                                                                AGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTA                  <  1:1593245/124‑1
                                                                                                                                AGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTA                  >  2:1593245/1‑124
                                                                                                                                AGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCA                                        >  2:1773091/1‑102
                                                                                                                                AGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCA                                        <  1:1773091/102‑1
                                                                                                                                AGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAAC                                                    >  2:139070/1‑90
                                                                                                                                AGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAAC                                                    <  1:139070/90‑1
                                                                                                                                AGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCG                                                                                      >  1:980962/1‑56
                                                                                                                                AGTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCG                                                                                      <  2:980962/56‑1
                                                                                                                                 GTCATTACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTCTTT  <  2:468026/139‑1
                                                                                                                                      TACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACA                                      >  2:89526/1‑98
                                                                                                                                      TACCTGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACA                                      <  1:89526/98‑1
                                                                                                                                                                                                                                                                            
CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/19933‑19796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCAATTTCTTCGCCAATAATAATCGCGCAGAGTTTAATAAAAGCGCAGCTAACGAGAAAGCGAATTTTGTAGCTGAAACCACGGTTAAGCACATTCTTACATTATTACGAGTATAGCTACGCTTTCTTT  <  NC_000913/883673‑883544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A